Rh6BG338300

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017506
Physical Location & Seq
Reverse (-)
57087145 .. 57089869
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG338300.1

Sequence Viewer

Length: 687 bp
ATGCAGAGTTTGAAGGATTTCTTGTTATGGATTAAGCAGGATCTTGGACCTTGGGGTCCACTTGTTTTGGCTGTCGCATACATTCCTCTCACGGTGCTGGCAGTTCCGGCTTCTGTACTTACTCTTGGTGGAGGTTATCTCTTTGGTTTGCCCGTGGGATTCATTGCAGACTCTATCGGTGCAACATTAGGTGCAACAGCGGCATTCATTCTTGGAAGAACAATTGGAAGATCTTATGTTATTTCCAAACTAAAGCATTATCCAAAGTTTCAAGCTGTTGCTGTTGCCATTCAGAGATCTGGTTTCAAGATAGTTCTTCTGCTGCGGCTTGCTCCTTTGCTTCCATTTAACATGCTGAACTACCTACTCTCTGTGACTCCTGTTCACATAGGGGACTATATGCTGGCAACTTGGTTGGGAATGATGCCGATCACATTTGCACTGGTATATGTTGGTACAACTCTTAAGGATCTTTCAGATGTTACACATGGATGGAATGAAGTTTCAACAACTCGTTGGGTGTTTATAGTACTTGGTTTTGGAATATCCGTGATTCTTCTGATTTGCATTAGTAAAGTTGCAAAGGCTTCTTTGGAAAAAGCACTGGCTGACAATGCTGAAATAGAAGGGATATTCTCGTCTTCAACGCTGCCCATTGTAGCAGGAATGAACTATATAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

228

Amino Acids

24.63

Weight (kDa)

9.16

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 35 - 153 7.1e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03260
fragaria_vesca FvH4_2g23830
malus_domestica MD03G1267800.v1.1
rosa_chinensis RchiOBHm_Chr6g0291411
rosa_laevigata RLG00000012116
rosa_multiflora Rmu_sc0003735.1_g000021
rosa_roxburghii Rroxscaffold_7G00176070
rosa_rugosa Rorug06G0219100
rosa_samantha Rh6AG331400 Rh6BG338300 Rh6CG344600
rosa_wichuraiana Rw6G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 54
AciI CCGC 2 cut(s) 200, 325
AclWI GGATC 2 cut(s) 48, 477
AfaI GTAC 3 cut(s) 117, 457, 531
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 5 cut(s) 13, 272, 307, 507, 645
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 2 cut(s) 48, 477
ApeKI GCWGC 2 cut(s) 322, 649
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 47, 56
AvaII GGWCC 2 cut(s) 47, 56
BbsI GAAGAC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 309, 636
BccI CCATC 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 464
BglII AGATCT 2 cut(s) 230, 296
BisI GCNGC 4 cut(s) 201, 323, 326, 650
BlsI GCNGC 4 cut(s) 202, 324, 327, 651
BmcAI AGTACT 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 47, 56
BmgT120I GGNCC 2 cut(s) 47, 56
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 50, 153
Bse1I ACTGG 2 cut(s) 447, 609
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 50, 153
BseGI GGATG 1 cut(s) 497
BseJI GATNNNNATC 1 cut(s) 428
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 447, 609
BseXI GCAGC 2 cut(s) 309, 636
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 203
Bsp143I GATC 5 cut(s) 40, 230, 296, 429, 469
BspACI CCGC 2 cut(s) 200, 325
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 48, 477
BspTI CTTAAG 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 447, 609
BssECI CCNNGG 2 cut(s) 50, 153
BssMI GATC 5 cut(s) 40, 230, 296, 429, 469
BssT1I CCWWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 94
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 99, 330, 405
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 497
BstKTI GATC 5 cut(s) 43, 233, 299, 432, 472
BstMBI GATC 5 cut(s) 40, 230, 296, 429, 469
BstMWI GCNNNNNNNGC 3 cut(s) 107, 200, 614
BstNSI RCATGY 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 309, 636
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 4 cut(s) 40, 230, 296, 469
BstYI RGATCY 4 cut(s) 40, 230, 296, 469
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 440, 602
Cac8I GCNNGC 3 cut(s) 99, 330, 405
Cfr13I GGNCC 2 cut(s) 47, 56
Csp6I GTAC 3 cut(s) 116, 456, 530
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 352, 488
CviJI RGCY 6 cut(s) 71, 110, 275, 328, 587, 608
CviKI_1 RGCY 6 cut(s) 71, 110, 275, 328, 587, 608
CviQI GTAC 3 cut(s) 116, 456, 530
DpnI GATC 5 cut(s) 42, 232, 298, 431, 471
DpnII GATC 5 cut(s) 40, 230, 296, 429, 469
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 47, 56
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 2 cut(s) 355, 491
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 351, 487
Fnu4HI GCNGC 4 cut(s) 201, 323, 326, 650
FokI GGATG 1 cut(s) 504
Fsp4HI GCNGC 4 cut(s) 201, 323, 326, 650
GluI GCNGC 4 cut(s) 201, 323, 326, 650
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 355, 491
HinfI GANTC 4 cut(s) 159, 170, 376, 553
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 59, 385
Hpy188I TCNGA 3 cut(s) 294, 478, 561
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 59, 385
HpyAV CCTTC 2 cut(s) 7, 620
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 7 cut(s) 4, 167, 182, 194, 440, 567, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 200, 614
Hsp92II CATG 2 cut(s) 355, 491
Kzo9I GATC 5 cut(s) 40, 230, 296, 429, 469
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 9 cut(s) 23, 83, 120, 285, 389, 393, 428, 590, 648
Lsp1109I GCAGC 2 cut(s) 309, 636
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 373, 481
MalI GATC 5 cut(s) 42, 232, 298, 431, 471
MboI GATC 5 cut(s) 40, 230, 296, 429, 469
MboII GAAGA 5 cut(s) 228, 240, 308, 548, 633
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 4 cut(s) 40, 230, 296, 469
MluCI AATT 1 cut(s) 222
MlyI GAGTC 2 cut(s) 164, 370
MnlI CCTC 2 cut(s) 96, 125
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 33, 348, 465
MslI CAYNNNNRTG 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 107, 200, 614
NdeII GATC 5 cut(s) 40, 230, 296, 429, 469
NlaIII CATG 2 cut(s) 355, 491
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 355
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 159, 553
PkrI GCNGC 4 cut(s) 202, 324, 327, 651
PleI GAGTC 2 cut(s) 164, 370
PpsI GAGTC 2 cut(s) 164, 370
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 47, 56
PsuI RGATCY 4 cut(s) 40, 230, 296, 469
RsaI GTAC 3 cut(s) 117, 457, 531
RsaNI GTAC 3 cut(s) 116, 456, 530
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 3 cut(s) 33, 348, 465
SatI GCNGC 4 cut(s) 201, 323, 326, 650
Sau3AI GATC 5 cut(s) 40, 230, 296, 429, 469
Sau96I GGNCC 2 cut(s) 47, 56
ScaI AGTACT 1 cut(s) 531
SchI GAGTC 2 cut(s) 164, 370
SetI ASST 5 cut(s) 52, 136, 193, 277, 366
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 2 cut(s) 47, 56
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 222
SsiI CCGC 2 cut(s) 200, 325
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 94
TasI AATT 1 cut(s) 222
TatI WGTACW 2 cut(s) 115, 529
TauI GCSGC 2 cut(s) 203, 328
TfiI GAWTC 2 cut(s) 159, 553
Tru1I TTAA 3 cut(s) 33, 348, 465
Tru9I TTAA 3 cut(s) 33, 348, 465
TscAI CASTG 2 cut(s) 447, 609
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 322, 649
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 151, 196, 513, 683
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 2 cut(s) 447, 609
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 47, 56
XceI RCATGY 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.