Rh6CG344600

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017506
Physical Location & Seq
Reverse (-)
53534061 .. 53536693
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG344600.1

Sequence Viewer

Length: 711 bp
ATGCAGAGTCTGAAGGATTTCTTGTTATGGATTAAGCAGGATCTTGGACCTTGGGGTCCACTTGTTTTGGCTGTCGCATACGTTCCTCTCACGGTGCTGGCAGTTCCGGCTTCTGTACTTACCCTTGGTGGAGGTTATCTTTTTGGTTTGCCCGTGGGATTCATTGCAGACTCTATCGGTGCAACATTAGGTGCAACAGCAGCATTCATTCTTGGAAGAACAATTGGAAGATCGTATGTTATTTCCAAACTAAAGCATTATCCAAAGTTTCAAGCTGTTGCTGTTGCCATTCAGAGATCTGGTTTCAAGATAGTTCTTCTGCTGCGGCTTGCTCCTTTGCTTCCATTTAACATGCTGAACTACCTACTCTCTGTGACTCCTGTTCACATAGGGGACTATATGCTGGCAACTTGGTTGGGAATGATGCCCATCACATTTGCACTGGTATATGTTGGTACAACGCTTAAGGATCTTTCAGATGTTACACATGGATGGAATGAAGTTTCAACAACTCGTTGGACTTTCCATTTCCTTCTTTCTTGCACAGTGATTCTTCTGATTTGCATTAGTAAAGTTGCAAAGGCTGCTTTGGAAAAAGCACTGGCCGACAATGCTGAAATAGAAGGGATATTCTCATCTTCAACGCTGCCCATTGTAGCAGGTTCATCCCCAGATCTTCCAAAAACTCTCATCATACAGATAGACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

236

Amino Acids

25.45

Weight (kDa)

8.85

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 35 - 153 7.8e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03260
fragaria_vesca FvH4_2g23830
malus_domestica MD03G1267800.v1.1
rosa_chinensis RchiOBHm_Chr6g0291411
rosa_laevigata RLG00000012116
rosa_multiflora Rmu_sc0003735.1_g000021
rosa_roxburghii Rroxscaffold_7G00176070
rosa_rugosa Rorug06G0219100
rosa_samantha Rh6AG331400 Rh6BG338300 Rh6CG344600
rosa_wichuraiana Rw6G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 650
AciI CCGC 1 cut(s) 325
AclWI GGATC 2 cut(s) 48, 477
AcoI YGGCCR 1 cut(s) 603
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 117, 457
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 4 cut(s) 272, 307, 507, 642
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 2 cut(s) 48, 477
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 4 cut(s) 200, 322, 584, 646
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 47, 56
AvaII GGWCC 2 cut(s) 47, 56
BbvI GCAGC 4 cut(s) 212, 309, 571, 633
BccI CCATC 2 cut(s) 437, 486
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 650
BglII AGATCT 2 cut(s) 296, 673
BisI GCNGC 5 cut(s) 201, 323, 326, 585, 647
BlsI GCNGC 5 cut(s) 202, 324, 327, 586, 648
Bme18I GGWCC 2 cut(s) 47, 56
BmgT120I GGNCC 2 cut(s) 47, 56
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 50, 124, 153
Bse1I ACTGG 2 cut(s) 447, 606
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 50, 124, 153
BseGI GGATG 2 cut(s) 497, 665
BseJI GATNNNNATC 1 cut(s) 428
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 447, 606
BseXI GCAGC 4 cut(s) 212, 309, 571, 633
BshFI GGCC 1 cut(s) 605
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 407
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 605
Bsp143I GATC 5 cut(s) 40, 230, 296, 469, 673
BspACI CCGC 1 cut(s) 325
BspANI GGCC 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 2 cut(s) 48, 477
BspTI CTTAAG 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 447, 606
BssECI CCNNGG 3 cut(s) 50, 124, 153
BssMI GATC 5 cut(s) 40, 230, 296, 469, 673
BssT1I CCWWGG 2 cut(s) 50, 124
Bst4CI ACNGT 2 cut(s) 94, 547
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 99, 330, 405
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 497, 665
BstKTI GATC 5 cut(s) 43, 233, 299, 472, 676
BstMBI GATC 5 cut(s) 40, 230, 296, 469, 673
BstMWI GCNNNNNNNGC 4 cut(s) 107, 200, 584, 611
BstNSI RCATGY 1 cut(s) 355
BstV1I GCAGC 4 cut(s) 212, 309, 571, 633
BstX2I RGATCY 4 cut(s) 40, 296, 469, 673
BstYI RGATCY 4 cut(s) 40, 296, 469, 673
BsuRI GGCC 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 497, 665
BtsIMutI CAGTG 3 cut(s) 440, 552, 599
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 3 cut(s) 99, 330, 405
CaiI CAGNNNCTG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 47, 56
Csp6I GTAC 2 cut(s) 116, 456
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 352, 488
CviJI RGCY 6 cut(s) 71, 110, 275, 328, 584, 605
CviKI_1 RGCY 6 cut(s) 71, 110, 275, 328, 584, 605
CviQI GTAC 2 cut(s) 116, 456
DpnI GATC 5 cut(s) 42, 232, 298, 471, 675
DpnII GATC 5 cut(s) 40, 230, 296, 469, 673
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 50, 124
Eco47I GGWCC 2 cut(s) 47, 56
Eco57I CTGAAG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 50, 124
ErhI CCWWGG 2 cut(s) 50, 124
FaeI CATG 2 cut(s) 355, 491
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 351, 487
Fnu4HI GCNGC 5 cut(s) 201, 323, 326, 585, 647
FokI GGATG 2 cut(s) 504, 652
Fsp4HI GCNGC 5 cut(s) 201, 323, 326, 585, 647
GluI GCNGC 5 cut(s) 201, 323, 326, 585, 647
HaeIII GGCC 1 cut(s) 605
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 355, 491
HinfI GANTC 6 cut(s) 7, 159, 170, 376, 550, 704
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 59, 385
Hpy188I TCNGA 4 cut(s) 12, 294, 478, 558
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 59, 385
HpyAV CCTTC 3 cut(s) 7, 542, 617
HpyCH4III ACNGT 2 cut(s) 94, 547
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 8 cut(s) 4, 167, 182, 194, 440, 543, 564, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 200, 584, 611
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 355, 491
Kzo9I GATC 5 cut(s) 40, 230, 296, 469, 673
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 4 cut(s) 212, 309, 571, 633
LweI GCATC 1 cut(s) 414
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 373, 481
MalI GATC 5 cut(s) 42, 232, 298, 471, 675
MboI GATC 5 cut(s) 40, 230, 296, 469, 673
MboII GAAGA 6 cut(s) 228, 240, 308, 545, 630, 668
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 4 cut(s) 40, 296, 469, 673
MluCI AATT 1 cut(s) 222
MlyI GAGTC 4 cut(s) 16, 164, 370, 698
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 2 cut(s) 96, 125
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 33, 348, 465
MslI CAYNNNNRTG 1 cut(s) 490
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 107, 200, 584, 611
NdeII GATC 5 cut(s) 40, 230, 296, 469, 673
NlaIII CATG 2 cut(s) 355, 491
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 355
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 159, 550
PkrI GCNGC 5 cut(s) 202, 324, 327, 586, 648
PleI GAGTC 4 cut(s) 15, 164, 370, 698
PpsI GAGTC 4 cut(s) 15, 164, 370, 698
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 47, 56
PstNI CAGNNNCTG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 40, 296, 469, 673
RsaI GTAC 2 cut(s) 117, 457
RsaNI GTAC 2 cut(s) 116, 456
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 3 cut(s) 33, 348, 465
SatI GCNGC 5 cut(s) 201, 323, 326, 585, 647
Sau3AI GATC 5 cut(s) 40, 230, 296, 469, 673
Sau96I GGNCC 2 cut(s) 47, 56
SchI GAGTC 4 cut(s) 16, 164, 370, 698
SetI ASST 7 cut(s) 52, 84, 136, 193, 277, 366, 664
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 2 cut(s) 47, 56
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 325
StyI CCWWGG 2 cut(s) 50, 124
TaaI ACNGT 2 cut(s) 94, 547
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 2 cut(s) 159, 550
Tru1I TTAA 3 cut(s) 33, 348, 465
Tru9I TTAA 3 cut(s) 33, 348, 465
TscAI CASTG 3 cut(s) 447, 552, 606
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 4 cut(s) 200, 322, 584, 646
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 151, 196, 513, 654
TspRI CASTG 3 cut(s) 447, 552, 606
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 47, 56
XceI RCATGY 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.