AT1G03360

Exosome complex component RRP4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012104
Physical Location & Seq
Forward (+)
824517 .. 826399
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03360.1

Sequence Viewer

Length: 969 bp
ATGGTGATGAGAAAGCTACAGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTTGAGAGAGCAATCGAGCGGCTTCAATCACTGTCGTCGTCGGCTAACTCTGACGCTTCTGTTATCGTCACCGACTCTATTCCCGTCAACCATGACGATGCCTTCCTCAAGGGACATGGAACTTCCGAGGTCGATGGTGAGTTGCTCGCGACGGTCTGTGGAGTAGTGGAGCGTGTGGATAAGCTTGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGATATTGTGGTAGGCCGTGTCATTGAGGTTGCTCAAAAACGTTGGAGAGTGGAGCTCAACTTCAATCAGGATGGAGTACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCGAAGAACCTCTGTGGATGAACTCAATATGCGGAATATCTTTGTAGAGCATGATGTCGTATGTGCTGAAGTACGCAACTTTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGTCAGAAGTATGGCAAGCTCGAGAAGGGACAACTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCAAACATCACTTTCATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGGTTTCATATGGGTTGGAGAACATGTCGAAGTGAGAGATCCTATGGCAATAGATGATCAGAAAGATGAGGAAATGATCTCATCCTCCTCCACAGGAAAAGAGCAAAGCCATATTCCACTCGAGACTCGACAAACCATATGCAGAATCGGGAATGCGATACGTGTCTTGTCTAATCTAGGCTTCACCGTGACACTAGAAGTAATCATGGAGACTGTTAACCTCAGTAACTCAAAGAATATTGACATACATGATATGCTTGGATCAGAGTTTCACGTTGTGGTAGCAGAGAATGAAGCTGAAAGAAGACGTACAAAGAGGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

322

Amino Acids

36.57

Weight (kDa)

6.84

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 88 - 159 3.4e-34 RRP4, S1 domain
KH_6 PF15985 182 - 223 9.7e-12 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 70, 433
AclI AACGTT 1 cut(s) 322
AclWI GGATC 3 cut(s) 557, 674, 910
AcuI CTGAAG 3 cut(s) 294, 489, 575
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 5 cut(s) 246, 266, 360, 474, 952
AfiI CCNNNNNNNGG 1 cut(s) 278
AflIII ACRYGT 2 cut(s) 664, 802
AgsI TTSAA 2 cut(s) 77, 346
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 6 cut(s) 16, 235, 337, 498, 535, 938
AluI AGCT 6 cut(s) 16, 235, 337, 498, 535, 938
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 758, 845
AlwI GGATC 3 cut(s) 557, 674, 910
Ama87I CYCGRG 2 cut(s) 536, 761
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 636
AsuHPI GGTGA 4 cut(s) 16, 112, 200, 817
AvaI CYCGRG 2 cut(s) 536, 761
BanII GRGCYC 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 952
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 179, 347, 383, 485
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 262
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 2 cut(s) 758, 845
BfaI CTAG 2 cut(s) 818, 836
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 2 cut(s) 71, 637
BlsI GCNGC 2 cut(s) 72, 638
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 536, 761
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 139, 354
BpiI GAAGAC 1 cut(s) 952
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 2 cut(s) 604, 803
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 646
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 3 cut(s) 358, 424, 722
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 877
BseRI GAGGAG 1 cut(s) 718
BseXI GCAGC 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 2 cut(s) 536, 761
BslFI GGGAC 2 cut(s) 177, 558
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 758, 845
BsmFI GGGAC 2 cut(s) 177, 558
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 2 cut(s) 536, 761
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 5 cut(s) 562, 679, 697, 717, 902
Bsp68I TCGCGA 1 cut(s) 200
BspACI CCGC 2 cut(s) 70, 433
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 876
BspFNI CGCG 1 cut(s) 200
BspPI GGATC 3 cut(s) 557, 674, 910
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 646
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 5 cut(s) 562, 679, 697, 717, 902
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 6 cut(s) 21, 27, 84, 205, 829, 856
BstBAI YACGTR 2 cut(s) 604, 803
BstC8I GCNNGC 4 cut(s) 198, 258, 500, 533
BstDEI CTNAG 1 cut(s) 863
BstF5I GGATG 3 cut(s) 358, 424, 722
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 5 cut(s) 565, 682, 700, 720, 905
BstMAI GTCTC 2 cut(s) 758, 845
BstMBI GATC 5 cut(s) 562, 679, 697, 717, 902
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 2 cut(s) 385, 668
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 604
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 952
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 1 cut(s) 297
BtsCI GGATG 3 cut(s) 358, 424, 722
BtsIMutI CAGTG 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 200
Cac8I GCNNGC 4 cut(s) 198, 258, 500, 533
CseI GACGC 2 cut(s) 46, 113
Csp6I GTAC 5 cut(s) 245, 265, 359, 473, 951
CviAII CATG 9 cut(s) 143, 167, 376, 382, 452, 488, 665, 847, 890
CviQI GTAC 5 cut(s) 245, 265, 359, 473, 951
DdeI CTNAG 1 cut(s) 863
DpnI GATC 5 cut(s) 564, 681, 699, 719, 904
DpnII GATC 5 cut(s) 562, 679, 697, 717, 902
DraIII CACNNNGTG 1 cut(s) 919
Ecl136II GAGCTC 1 cut(s) 337
Eco105I TACGTA 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 3 cut(s) 294, 489, 575
Eco88I CYCGRG 2 cut(s) 536, 761
EcoICRI GAGCTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 9 cut(s) 146, 170, 379, 385, 455, 491, 668, 850, 893
FaqI GGGAC 2 cut(s) 177, 558
FatI CATG 9 cut(s) 142, 166, 375, 381, 451, 487, 664, 846, 889
FauNDI CATATG 2 cut(s) 650, 779
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 2 cut(s) 71, 637
FokI GGATG 3 cut(s) 365, 431, 709
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 71, 637
FspBI CTAG 2 cut(s) 818, 836
GluI GCNGC 2 cut(s) 71, 637
HaeIII GGCC 1 cut(s) 297
HgaI GACGC 2 cut(s) 46, 113
Hin1II CATG 9 cut(s) 146, 170, 379, 385, 455, 491, 668, 850, 893
HincII GTYRAC 2 cut(s) 139, 859
HindII GTYRAC 2 cut(s) 139, 859
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 125, 766, 786
HpaI GTTAAC 1 cut(s) 859
HphI GGTGA 4 cut(s) 16, 112, 200, 817
Hpy166II GTNNAC 2 cut(s) 139, 859
Hpy188I TCNGA 7 cut(s) 103, 178, 399, 522, 555, 702, 907
Hpy188III TCNNGA 5 cut(s) 199, 350, 538, 763, 790
Hpy8I GTNNAC 2 cut(s) 139, 859
Hpy99I CGWCG 3 cut(s) 91, 94, 205
HpyAV CCTTC 4 cut(s) 37, 163, 535, 550
HpyCH4III ACNGT 6 cut(s) 21, 27, 84, 205, 829, 856
HpyCH4IV ACGT 5 cut(s) 322, 603, 802, 915, 949
HpyCH4V TGCA 3 cut(s) 502, 639, 783
HpyF3I CTNAG 1 cut(s) 863
HpySE526I ACGT 5 cut(s) 322, 603, 802, 915, 949
Hsp92II CATG 9 cut(s) 146, 170, 379, 385, 455, 491, 668, 850, 893
Ksp22I TGATCA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 5 cut(s) 562, 679, 697, 717, 902
LmnI GCTCC 2 cut(s) 220, 334
LpnPI CCDG 8 cut(s) 47, 247, 274, 285, 335, 399, 526, 720
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 2 cut(s) 139, 354
MaeI CTAG 2 cut(s) 818, 836
MaeII ACGT 5 cut(s) 322, 603, 802, 915, 949
MaeIII GTNAC 5 cut(s) 21, 118, 504, 829, 866
MalI GATC 5 cut(s) 564, 681, 699, 719, 904
MbiI CCGCTC 1 cut(s) 70
MboI GATC 5 cut(s) 562, 679, 697, 717, 902
MboII GAAGA 3 cut(s) 363, 417, 957
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 339
MlyI GAGTC 2 cut(s) 119, 760
MmeI TCCRAC 2 cut(s) 305, 637
MseI TTAA 2 cut(s) 576, 858
MslI CAYNNNNRTG 2 cut(s) 147, 380
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 200
NdeI CATATG 2 cut(s) 650, 779
NdeII GATC 5 cut(s) 562, 679, 697, 717, 902
NlaIII CATG 9 cut(s) 146, 170, 379, 385, 455, 491, 668, 850, 893
NmuCI GTSAC 2 cut(s) 118, 829
NruI TCGCGA 1 cut(s) 200
NspI RCATGY 2 cut(s) 385, 668
PaeR7I CTCGAG 2 cut(s) 536, 761
PciI ACATGT 1 cut(s) 664
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PctI GAATGC 1 cut(s) 799
PfeI GAWTC 1 cut(s) 786
PkrI GCNGC 2 cut(s) 72, 638
PleI GAGTC 2 cut(s) 119, 760
PpsI GAGTC 2 cut(s) 119, 760
Ppu21I YACGTR 2 cut(s) 604, 803
PscI ACATGT 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 679
RruI TCGCGA 1 cut(s) 200
RsaI GTAC 5 cut(s) 246, 266, 360, 474, 952
RsaNI GTAC 5 cut(s) 245, 265, 359, 473, 951
RseI CAYNNNNRTG 2 cut(s) 147, 380
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 576, 858
SatI GCNGC 2 cut(s) 71, 637
Sau3AI GATC 5 cut(s) 562, 679, 697, 717, 902
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 2 cut(s) 119, 760
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 2 cut(s) 139, 354
SfcI CTRYAG 1 cut(s) 17
Sfr274I CTCGAG 2 cut(s) 536, 761
SlaI CTCGAG 2 cut(s) 536, 761
SmiMI CAYNNNNRTG 2 cut(s) 147, 380
SmlI CTYRAG 3 cut(s) 158, 536, 761
SmoI CTYRAG 3 cut(s) 158, 536, 761
SnaBI TACGTA 1 cut(s) 604
SsiI CCGC 2 cut(s) 70, 433
SspI AATATT 1 cut(s) 880
SspMI CTAG 2 cut(s) 818, 836
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 6 cut(s) 21, 27, 84, 205, 829, 856
TaiI ACGT 5 cut(s) 325, 606, 805, 918, 952
TaqI TCGA 7 cut(s) 66, 183, 537, 561, 669, 762, 769
TatI WGTACW 1 cut(s) 358
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 786
Tru1I TTAA 2 cut(s) 576, 858
Tru9I TTAA 2 cut(s) 576, 858
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 2 cut(s) 118, 829
TseI GCWGC 1 cut(s) 636
Tsp45I GTSAC 2 cut(s) 118, 829
TspDTI ATGAA 5 cut(s) 392, 435, 587, 637, 948
TspRI CASTG 1 cut(s) 87
XceI RCATGY 2 cut(s) 385, 668
XhoI CTCGAG 2 cut(s) 536, 761
XspI CTAG 2 cut(s) 818, 836
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.