Rroxscaffold_7G00177980

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012104
Physical Location & Seq
Forward (+)
17644825 .. 17647067
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177980.1

Sequence Viewer

Length: 567 bp
ATGAGAGGGTTGCAGCTCTCCTTGAACCAAACCCAGAAGGTTCGCCTTCAGAGAGCTCTGGAAAAGCTTGAGTCTCTGTCCTCAAAACCCAATTCCAATGCTTCTGTTATTGTCGCCGATTCCATCCCCGTTAACCACGAAGACGGACTTCTCAAGGGACATGGGACCTCTGAAGTTAACGGTGAAGTTGTTGCGACGGTTTGCGGCGTCGTCGAGAGGGTTAATAAGCTGGTCTATGTGCGTTCGTTAAGAGCTAGGTACAAACCAGAGGTTGGAGATATCATAGTAGGGCGTGTTATTGAGGTTGCTCCGAAACGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCAATGAACTTACCCGATGGCATCCAGAGGCGTCGAACTGCTCTGGATGAGCTGAACATGCGCACTATTTTTGAAGAGAACGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGGAAGCTTGGAAGGGGGGTCAAATGCTCACAGTCCCTCCTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

188

Amino Acids

21.0

Weight (kDa)

9.4

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 86 - 157 3.6e-35 RRP4, S1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 316
AcuI CTGAAG 3 cut(s) 32, 192, 483
AcyI GRCGYC 2 cut(s) 207, 397
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 25, 369, 440, 479
AluBI AGCT 7 cut(s) 16, 56, 67, 229, 254, 418, 526
AluI AGCT 7 cut(s) 16, 56, 67, 229, 254, 418, 526
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 25
BccI CCATC 3 cut(s) 131, 377, 479
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 255, 565
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 2 cut(s) 14, 205
BlsI GCNGC 2 cut(s) 15, 206
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 3 cut(s) 337, 348, 396
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 89, 137
BsaHI GRCGYC 2 cut(s) 207, 397
BsaXI ACNNNNNCTCC 1 cut(s) 540
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 123, 387, 418
BseLI CCNNNNNNNGG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 3 cut(s) 171, 178, 538
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 3 cut(s) 171, 178, 538
Bsp1286I GDGCHC 1 cut(s) 58
BspACI CCGC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 166
BssNI GRCGYC 2 cut(s) 207, 397
Bst4CI ACNGT 3 cut(s) 182, 199, 552
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 2 cut(s) 207, 397
BstF5I GGATG 3 cut(s) 123, 387, 418
BstHHI GCGC 1 cut(s) 429
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 147
BtsCI GGATG 3 cut(s) 123, 387, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 2 cut(s) 196, 386
Csp6I GTAC 1 cut(s) 259
CviAII CATG 4 cut(s) 161, 344, 424, 482
CviJI RGCY 8 cut(s) 16, 56, 67, 229, 254, 342, 418, 526
CviKI_1 RGCY 8 cut(s) 16, 56, 67, 229, 254, 342, 418, 526
CviQI GTAC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 3 cut(s) 32, 192, 483
EcoICRI GAGCTC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 165
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 4 cut(s) 164, 347, 427, 485
FaiI YATR 8 cut(s) 162, 237, 284, 339, 345, 425, 483, 519
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 3 cut(s) 171, 178, 538
FatI CATG 4 cut(s) 160, 343, 423, 481
Fnu4HI GCNGC 2 cut(s) 14, 205
FokI GGATG 3 cut(s) 110, 374, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 14, 205
FspAI RTGCGCAY 1 cut(s) 428
FspBI CTAG 2 cut(s) 255, 565
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 1 cut(s) 428
GluI GCNGC 2 cut(s) 14, 205
HgaI GACGC 2 cut(s) 196, 386
HhaI GCGC 1 cut(s) 429
Hin1I GRCGYC 2 cut(s) 207, 397
Hin1II CATG 4 cut(s) 164, 347, 427, 485
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 2 cut(s) 133, 178
HindII GTYRAC 2 cut(s) 133, 178
HindIII AAGCTT 2 cut(s) 65, 524
HinfI GANTC 2 cut(s) 71, 119
HpaI GTTAAC 2 cut(s) 133, 178
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 3 cut(s) 133, 178, 491
Hpy188I TCNGA 4 cut(s) 51, 172, 312, 513
Hpy188III TCNNGA 4 cut(s) 59, 214, 391, 410
Hpy8I GTNNAC 3 cut(s) 133, 178, 491
Hpy99I CGWCG 4 cut(s) 199, 212, 215, 402
HpyAV CCTTC 3 cut(s) 31, 56, 525
HpyCH4III ACNGT 3 cut(s) 182, 199, 552
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 13, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 2 cut(s) 207, 397
Hsp92II CATG 4 cut(s) 164, 347, 427, 485
HspAI GCGC 1 cut(s) 427
KspAI GTTAAC 2 cut(s) 133, 178
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 6 cut(s) 44, 47, 215, 279, 395, 404
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 337, 348, 396
MaeI CTAG 2 cut(s) 255, 565
MaeII ACGT 1 cut(s) 316
MboII GAAGA 3 cut(s) 152, 357, 452
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 253, 299
MnlI CCTC 7 cut(s) 91, 178, 210, 262, 295, 387, 566
MseI TTAA 4 cut(s) 132, 177, 222, 248
MwoI GCNNNNNNNGC 1 cut(s) 424
NlaIII CATG 4 cut(s) 164, 347, 427, 485
NlaIV GGNNCC 1 cut(s) 166
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 1 cut(s) 427
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 2 cut(s) 15, 206
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 165
PspPPI RGGWCCY 1 cut(s) 165
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 4 cut(s) 132, 177, 222, 248
SatI GCNGC 2 cut(s) 14, 205
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 3 cut(s) 337, 348, 396
SfcI CTRYAG 1 cut(s) 337
SinI GGWCC 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 68, 152
SmoI CTYRAG 2 cut(s) 68, 152
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 255, 565
SstI GAGCTC 1 cut(s) 58
TaaI ACNGT 3 cut(s) 182, 199, 552
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 213, 400
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 132, 177, 222, 248
Tru9I TTAA 4 cut(s) 132, 177, 222, 248
TscAI CASTG 1 cut(s) 357
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 165
XceI RCATGY 1 cut(s) 427
XspI CTAG 2 cut(s) 255, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.