MD11G1292000.v1.1

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012104
Physical Location & Seq
Forward (+)
41181986 .. 41184255
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1292000.v1.1.491

Sequence Viewer

Length: 975 bp
ATGAAAGATTTACAGCTTTCGCTGAACCAAACCCAGAAGGTCCGGCTACATAGAGCTCTCGAAAAGCTCGAGTCTTTGGCTTCAAAGGCCAATTCCAACGCTTCCGTCACCGTCGCCGATTCCATCCCCGTTAACTACGAAGACGGCCTTCTCAAGGGACATGGGACCTCTGAGGTCAATGGGGAAGTTGTTGCGACGGTTTGCGGCGTCGTCGAGAGAGTCAATAAGCTGGTTTATGTGCGTTCTTTAAGGGCCAGGTACAAACCAGAGGTTGGAGATATCATAGTGGGGCGTGTTATTGAGGTTGCTCCGAAGCGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCGATGAACTTACCTGACGGCATACAGAGGCGCCGAACTGCCCTGGATGAACTCAACATGCGCAGCATTTTTGAAGAGAATGATGTCATTTGTGCTGAAGTTCGTGGTTTCCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGAAAGCTTGGAAGGGGTCAGTTGCTCACAGTTCCTTCTTATCTAGTGAAACGACGAAAGCAGCACTTCCATCATCTAGAAAACTATGGCATTGACCTGATACTCGGCTGTAATGGTTTCATCTGGGTTGGTGAACATGTTGAAGTTACTGACGATATGCTAGTAGATCACAAGTCTCAACAACATGATACCAAAGCCGATAAAAATTCCATTAGTCCCGAAGATCAGGAGAAAAACTACACTACGCAACAGACAAGAGAGAACATATGCAGAACTGCAAATGCTATCCGCGCATTGTCTACATTAGGCTTCAGTATTACCGTAGAAGTGATCATGGAGACGGTAGACTTGAGCAGTTCTATAAATGTTGCTATACATGAAATGCTCGGCGCAGAGTTTTGTGTTCTGGTTGCAGAAAAGGAGGCTGTGCGACGAAGCATGACTAAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

7.72

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 86 - 157 7.8e-35 RRP4, S1 domain
KH_6 PF15985 179 - 220 4.6e-12 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 272
AccI GTMKAC 2 cut(s) 818, 864
AccII CGCG 1 cut(s) 810
AciI CCGC 2 cut(s) 204, 808
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 2 cut(s) 483, 814
AcyI GRCGYC 2 cut(s) 207, 397
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 154, 272
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 3 cut(s) 84, 440, 662
AjnI CCWGG 2 cut(s) 254, 408
AluBI AGCT 5 cut(s) 16, 56, 67, 229, 526
AluI AGCT 5 cut(s) 16, 56, 67, 229, 526
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 699, 851
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 3 cut(s) 87, 145, 252
ApeKI GCWGC 2 cut(s) 429, 580
ApoI RAATTY 1 cut(s) 724
AspLEI GCGC 4 cut(s) 399, 429, 812, 911
AspS9I GGNCC 3 cut(s) 40, 165, 252
AsuHPI GGTGA 2 cut(s) 100, 662
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 40, 165
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 441, 592
BccI CCATC 3 cut(s) 131, 479, 597
BceAI ACGGC 2 cut(s) 160, 400
BciT130I CCWGG 2 cut(s) 256, 410
BclI TGATCA 1 cut(s) 849
BcoDI GTCTC 2 cut(s) 699, 851
BfaI CTAG 3 cut(s) 563, 596, 680
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 3 cut(s) 205, 430, 581
BlsI GCNGC 3 cut(s) 206, 431, 582
Bme1390I CCNGG 2 cut(s) 256, 410
Bme18I GGWCC 2 cut(s) 40, 165
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 40, 165, 252
BmiI GGNNCC 2 cut(s) 166, 398
BmrFI CCNGG 2 cut(s) 256, 410
BmsI GCATC 2 cut(s) 337, 348
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 137, 889
BsaHI GRCGYC 2 cut(s) 207, 397
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 272
BseBI CCWGG 2 cut(s) 256, 410
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 123, 418
BseLI CCNNNNNNNGG 2 cut(s) 154, 272
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 441, 592
Bsh1236I CGCG 1 cut(s) 810
BshFI GGCC 3 cut(s) 89, 147, 254
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 3 cut(s) 171, 178, 720
BslI CCNNNNNNNGG 2 cut(s) 154, 272
BsmAI GTCTC 2 cut(s) 699, 851
BsmBI CGTCTC 1 cut(s) 851
BsmFI GGGAC 3 cut(s) 171, 178, 720
BsnI GGCC 3 cut(s) 89, 147, 254
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 3 cut(s) 685, 742, 849
BspACI CCGC 2 cut(s) 204, 808
BspANI GGCC 3 cut(s) 89, 147, 254
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 810
BspLI GGNNCC 2 cut(s) 166, 398
BspT107I GGYRCC 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 3 cut(s) 685, 742, 849
BssNI GRCGYC 2 cut(s) 207, 397
Bst2UI CCWGG 2 cut(s) 256, 410
Bst4CI ACNGT 5 cut(s) 112, 199, 550, 841, 862
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 2 cut(s) 207, 397
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 123, 418
BstFNI CGCG 1 cut(s) 810
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 4 cut(s) 399, 429, 812, 911
BstKTI GATC 3 cut(s) 688, 745, 852
BstMAI GTCTC 2 cut(s) 699, 851
BstMBI GATC 3 cut(s) 685, 742, 849
BstMWI GCNNNNNNNGC 2 cut(s) 86, 809
BstNI CCWGG 2 cut(s) 256, 410
BstNSI RCATGY 2 cut(s) 427, 659
BstSCI CCNGG 2 cut(s) 254, 408
BstSFI CTRYAG 1 cut(s) 337
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 2 cut(s) 441, 592
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 485
BsuRI GGCC 3 cut(s) 89, 147, 254
BtsCI GGATG 2 cut(s) 123, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
CfoI GCGC 4 cut(s) 399, 429, 812, 911
Cfr13I GGNCC 3 cut(s) 40, 165, 252
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 259
CviAII CATG 9 cut(s) 161, 344, 424, 482, 656, 704, 853, 896, 958
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 398
DpnI GATC 3 cut(s) 687, 744, 851
DpnII GATC 3 cut(s) 685, 742, 849
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 2 cut(s) 40, 165
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 483, 814
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 254, 408
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 851
FaeI CATG 9 cut(s) 164, 347, 427, 485, 659, 707, 856, 899, 961
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 569, 601
FaqI GGGAC 3 cut(s) 171, 178, 720
FatI CATG 9 cut(s) 160, 343, 423, 481, 655, 703, 852, 895, 957
FauNDI CATATG 1 cut(s) 785
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 2 cut(s) 818, 864
Fnu4HI GCNGC 3 cut(s) 205, 430, 581
FokI GGATG 2 cut(s) 110, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 205, 430, 581
FspBI CTAG 3 cut(s) 563, 596, 680
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 4 cut(s) 398, 428, 811, 910
GluI GCNGC 3 cut(s) 205, 430, 581
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 3 cut(s) 89, 147, 254
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 196
HhaI GCGC 4 cut(s) 399, 429, 812, 911
Hin1I GRCGYC 2 cut(s) 207, 397
Hin1II CATG 9 cut(s) 164, 347, 427, 485, 659, 707, 856, 899, 961
Hin6I GCGC 4 cut(s) 397, 427, 810, 909
HinP1I GCGC 4 cut(s) 397, 427, 810, 909
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 71, 119, 219
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 100, 662
Hpy166II GTNNAC 5 cut(s) 133, 491, 653, 819, 865
Hpy188I TCNGA 3 cut(s) 172, 312, 513
Hpy188III TCNNGA 5 cut(s) 59, 214, 596, 737, 746
Hpy8I GTNNAC 5 cut(s) 133, 491, 653, 819, 865
Hpy99I CGWCG 6 cut(s) 116, 199, 212, 215, 576, 954
HpyAV CCTTC 4 cut(s) 31, 158, 525, 564
HpyCH4III ACNGT 5 cut(s) 112, 199, 550, 841, 862
HpyCH4V TGCA 4 cut(s) 350, 789, 797, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 809
HpyF3I CTNAG 1 cut(s) 171
Hsp92I GRCGYC 2 cut(s) 207, 397
Hsp92II CATG 9 cut(s) 164, 347, 427, 485, 659, 707, 856, 899, 961
HspAI GCGC 4 cut(s) 397, 427, 810, 909
KasI GGCGCC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 849
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 685, 742, 849
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 2 cut(s) 441, 592
LweI GCATC 2 cut(s) 337, 348
MaeI CTAG 3 cut(s) 563, 596, 680
MaeIII GTNAC 2 cut(s) 106, 664
MalI GATC 3 cut(s) 687, 744, 851
MboI GATC 3 cut(s) 685, 742, 849
MboII GAAGA 4 cut(s) 152, 357, 452, 752
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 91, 724
Mly113I GGCGCC 1 cut(s) 397
MlyI GAGTC 2 cut(s) 80, 228
MmeI TCCRAC 4 cut(s) 120, 253, 299, 502
MnlI CCTC 6 cut(s) 166, 178, 262, 295, 387, 934
MseI TTAA 2 cut(s) 132, 248
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 256, 410
MvaI CCWGG 2 cut(s) 256, 410
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 2 cut(s) 86, 809
NarI GGCGCC 1 cut(s) 397
NdeI CATATG 1 cut(s) 785
NdeII GATC 3 cut(s) 685, 742, 849
NlaIII CATG 9 cut(s) 164, 347, 427, 485, 659, 707, 856, 899, 961
NlaIV GGNNCC 2 cut(s) 166, 398
NmeAIII GCCGAG 2 cut(s) 603, 885
NmuCI GTSAC 1 cut(s) 106
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 2 cut(s) 427, 659
PaeR7I CTCGAG 1 cut(s) 68
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 3 cut(s) 206, 431, 582
PleI GAGTC 2 cut(s) 79, 227
PluTI GGCGCC 1 cut(s) 400
PpsI GAGTC 2 cut(s) 79, 227
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 254, 408
PspGI CCWGG 2 cut(s) 254, 408
PspN4I GGNNCC 2 cut(s) 166, 398
PspPI GGNCC 3 cut(s) 40, 165, 252
PspPPI RGGWCCY 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 68
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 132, 248
SatI GCNGC 3 cut(s) 205, 430, 581
Sau3AI GATC 3 cut(s) 685, 742, 849
Sau96I GGNCC 3 cut(s) 40, 165, 252
SchI GAGTC 2 cut(s) 80, 228
ScrFI CCNGG 2 cut(s) 256, 410
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 2 cut(s) 337, 348
SfcI CTRYAG 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 398
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 2 cut(s) 40, 165
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 3 cut(s) 68, 152, 868
SmoI CTYRAG 3 cut(s) 68, 152, 868
Sse9I AATT 2 cut(s) 91, 724
SsiI CCGC 2 cut(s) 204, 808
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 3 cut(s) 563, 596, 680
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 254, 408
TaaI ACNGT 5 cut(s) 112, 199, 550, 841, 862
TaqI TCGA 4 cut(s) 60, 69, 213, 368
TasI AATT 2 cut(s) 91, 724
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 132, 248
Tru9I TTAA 2 cut(s) 132, 248
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 429, 580
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 5 cut(s) 17, 386, 429, 628, 912
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 40, 165
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 724
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 2 cut(s) 427, 659
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 818, 864
XspI CTAG 3 cut(s) 563, 596, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.