MD03G1271400.v1.1

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012104
Physical Location & Seq
Forward (+)
35476301 .. 35478261
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1271400.v1.1.491

Sequence Viewer

Length: 585 bp
ATGAAAGATTTACAGCTTTCGCTGAACCAAACCCAGAAGGTTCGGCTACAGAGAGCTCTCGAAAGGCTCGAGTCTTTGTCTTCAAAGGCCAATTCCAACGCCTCCGTCACCGTCGCGGACTCCATCCCCGTTAACTACGAAGACGGCCTTCTCAAGGGACATGGGACCTCTGAGGTCAATGGGGAAGTTGTTGCGACGGTTTGCGGCGTCGTCGAGAGAGTCAATAAGCTGGTTTATGTGCGTTCTTTAAGGGCCAGGTACAAACCAGAGGTTGGAGATATCATAGTGGGGCGTGTAATTGAGGTTGCTCCGAAACGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCAATGAACTTACCCGACGGCATCCAGAGGCGCCGAACTGCTCTGGATGAACTCAACATGCGCAGCATTTTTGAAGAGAATGATGTCATTTGTGCCGAAGTTCGTGGTTTTCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGAAAGGTTCTATTCGCTTCATCGTTCTTGGAAGGGGTCAGTTGCTCACAGTTCCTTCTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

195

Amino Acids

21.72

Weight (kDa)

8.45

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 86 - 157 2.9e-35 RRP4, S1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 272
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 116, 204
AclI AACGTT 1 cut(s) 316
AcyI GRCGYC 2 cut(s) 207, 397
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 154, 272
AgsI TTSAA 4 cut(s) 84, 369, 440, 479
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 16, 56, 229
AluI AGCT 3 cut(s) 16, 56, 229
Alw21I GWGCWC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 3 cut(s) 87, 145, 252
ApeKI GCWGC 1 cut(s) 429
AspLEI GCGC 2 cut(s) 399, 429
AspS9I GGNCC 2 cut(s) 165, 252
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 72, 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 441
BccI CCATC 2 cut(s) 131, 479
BceAI ACGGC 2 cut(s) 160, 400
BciT130I CCWGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 583
BfmI CTRYAG 2 cut(s) 47, 337
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 2 cut(s) 205, 430
BlsI GCNGC 2 cut(s) 206, 431
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 165, 252
BmiI GGNNCC 2 cut(s) 166, 398
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 3 cut(s) 337, 348, 396
BpiI GAAGAC 2 cut(s) 72, 147
BpuEI CTTGAG 1 cut(s) 137
BsaHI GRCGYC 2 cut(s) 207, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 272
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 3 cut(s) 123, 387, 418
BseLI CCNNNNNNNGG 2 cut(s) 154, 272
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 89, 147, 254
BshNI GGYRCC 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 68
BslFI GGGAC 2 cut(s) 171, 178
BslI CCNNNNNNNGG 2 cut(s) 154, 272
BsmFI GGGAC 2 cut(s) 171, 178
BsnI GGCC 3 cut(s) 89, 147, 254
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 58
BspACI CCGC 2 cut(s) 116, 204
BspANI GGCC 3 cut(s) 89, 147, 254
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 166, 398
BspT107I GGYRCC 1 cut(s) 396
BssNI GRCGYC 2 cut(s) 207, 397
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 112, 199, 570
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 2 cut(s) 207, 397
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 123, 387, 418
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 2 cut(s) 399, 429
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 2 cut(s) 47, 337
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 72, 147
BsuRI GGCC 3 cut(s) 89, 147, 254
BtsCI GGATG 3 cut(s) 123, 387, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
CfoI GCGC 2 cut(s) 399, 429
Cfr13I GGNCC 2 cut(s) 165, 252
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 259
CviAII CATG 4 cut(s) 161, 344, 424, 482
CviJI RGCY 9 cut(s) 16, 46, 56, 67, 89, 147, 229, 254, 342
CviKI_1 RGCY 9 cut(s) 16, 46, 56, 67, 89, 147, 229, 254, 342
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 58
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
FaeI CATG 4 cut(s) 164, 347, 427, 485
FaiI YATR 8 cut(s) 162, 237, 284, 339, 345, 425, 483, 519
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 2 cut(s) 171, 178
FatI CATG 4 cut(s) 160, 343, 423, 481
Fnu4HI GCNGC 2 cut(s) 205, 430
FokI GGATG 3 cut(s) 110, 374, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 205, 430
FspBI CTAG 1 cut(s) 583
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 2 cut(s) 398, 428
GluI GCNGC 2 cut(s) 205, 430
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 3 cut(s) 89, 147, 254
HgaI GACGC 1 cut(s) 196
HhaI GCGC 2 cut(s) 399, 429
Hin1I GRCGYC 2 cut(s) 207, 397
Hin1II CATG 4 cut(s) 164, 347, 427, 485
Hin6I GCGC 2 cut(s) 397, 427
HinP1I GCGC 2 cut(s) 397, 427
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 71, 119, 219
HpaI GTTAAC 1 cut(s) 133
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 133, 491
Hpy188I TCNGA 3 cut(s) 172, 312, 513
Hpy188III TCNNGA 4 cut(s) 59, 214, 391, 410
Hpy8I GTNNAC 2 cut(s) 133, 491
Hpy99I CGWCG 5 cut(s) 116, 199, 212, 215, 386
HpyAV CCTTC 4 cut(s) 31, 158, 545, 584
HpyCH4III ACNGT 3 cut(s) 112, 199, 570
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 2 cut(s) 207, 397
Hsp92II CATG 4 cut(s) 164, 347, 427, 485
HspAI GCGC 2 cut(s) 397, 427
KasI GGCGCC 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 7 cut(s) 47, 215, 241, 268, 279, 395, 404
Lsp1109I GCAGC 1 cut(s) 441
LweI GCATC 3 cut(s) 337, 348, 396
MaeI CTAG 1 cut(s) 583
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 4 cut(s) 72, 152, 357, 452
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 91, 297
Mly113I GGCGCC 1 cut(s) 397
MlyI GAGTC 3 cut(s) 80, 113, 228
MmeI TCCRAC 3 cut(s) 120, 253, 299
MnlI CCTC 6 cut(s) 112, 166, 178, 262, 295, 387
MseI TTAA 2 cut(s) 132, 248
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 116
NarI GGCGCC 1 cut(s) 397
NlaIII CATG 4 cut(s) 164, 347, 427, 485
NlaIV GGNNCC 2 cut(s) 166, 398
NmuCI GTSAC 1 cut(s) 106
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 2 cut(s) 206, 431
PleI GAGTC 3 cut(s) 79, 113, 227
PluTI GGCGCC 1 cut(s) 400
PpsI GAGTC 3 cut(s) 79, 113, 227
PpuMI RGGWCCY 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 166, 398
PspPI GGNCC 2 cut(s) 165, 252
PspPPI RGGWCCY 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 68
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 132, 248
SatI GCNGC 2 cut(s) 205, 430
Sau96I GGNCC 2 cut(s) 165, 252
SchI GAGTC 3 cut(s) 80, 113, 228
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 3 cut(s) 337, 348, 396
SfcI CTRYAG 2 cut(s) 47, 337
SfoI GGCGCC 1 cut(s) 398
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 68, 152
SmoI CTYRAG 2 cut(s) 68, 152
Sse9I AATT 2 cut(s) 91, 297
SsiI CCGC 2 cut(s) 116, 204
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 1 cut(s) 583
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 112, 199, 570
TaiI ACGT 1 cut(s) 319
TaqI TCGA 3 cut(s) 60, 69, 213
TasI AATT 2 cut(s) 91, 297
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 2 cut(s) 132, 248
Tru9I TTAA 2 cut(s) 132, 248
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 17, 386, 429, 528
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 152
XceI RCATGY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.