Prupe.8G247600_v2.0.a1

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012104
Physical Location & Seq
Forward (+)
21415077 .. 21417619
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G247600.1

Sequence Viewer

Length: 981 bp
ATGAGAGAGCTACAGCTTTCGTTGAACCAAACCCAGAAGGTTCGGCTACAGAGAGCTCTCGAAAAGCTTGAGTCTTTGTCTTCAAAGGCCAATTCCAATGCTTCTGTTACTGTCGCCGATTCAATCCCTGTTAACTACGAAGACGGCCTTCTCAAGGGACATGGGACCTCTGAGTTCAATGGTGAAGTTGTTGCCACCGTTTGCGGTATCGTCGAGCGCGTCAATAAGCTGGTCTATGTGCGTGCTCTAAGGGCCAGGTACAAGCCAGAGGTTGGAGATATCATAGTGGGGCGTGTTATTGAGGTTGCTCCAAAGCGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCAATGAACTTACCTGACGGCATCCAGAGGCGACGAACTGCTCTGGATGAACTCAACATGCGCAGCATTTTTGAGGAGAATGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGAAAGCTTGGAAGGGGTCAATTGCTGACAGTCCCTCCTTATCTGGTGAAAAGACGCAAGCAGCACTTCCATCATTTAGAAAACTATGGTATTGACCTGATAATTGGCTGTAATGGATTCATCTGGGTTGGGGAACATGTTCAAGTGACAGACGATATGGTAGTGGATCAAGTGAACAAGTCTGAACAAGATGATGCCAAACCTGATGAAAATTCCATTAGTCCCGAAGATCAAGGGAAAAACTACACTCGGCAAGAGACAAGAGAGAACATATGCAGGGCTGCAAATGCTATCCGCGTATTGTCTACTTTAGGCTTCAATATTACTGTAGAAGTAATCACGGAGACGGTTGATTTGAGCACTTCTATAAATGTTGCTATACATGAAATGCTGGGTTCAGAGTTCTATGTTTTGGTTGCAGAGAAGGAGTCTGTAAGGCGAAGCATGACAAAAAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

327

Amino Acids

36.84

Weight (kDa)

6.77

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 272
AccI GTMKAC 1 cut(s) 824
AccII CGCG 2 cut(s) 219, 816
AciI CCGC 2 cut(s) 204, 814
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 154, 272
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 8 cut(s) 25, 84, 123, 178, 369, 479, 662, 838
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 6 cut(s) 10, 16, 56, 67, 229, 526
AluI AGCT 6 cut(s) 10, 16, 56, 67, 229, 526
Alw21I GWGCWC 3 cut(s) 58, 247, 881
Alw26I GTCTC 2 cut(s) 770, 857
AlwI GGATC 1 cut(s) 693
AoxI GGCC 3 cut(s) 87, 145, 252
ApeKI GCWGC 3 cut(s) 429, 580, 800
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 2 cut(s) 856, 888
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 2 cut(s) 219, 429
AspS9I GGNCC 2 cut(s) 165, 252
AsuHPI GGTGA 2 cut(s) 194, 577
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 72, 147
Bbv12I GWGCWC 3 cut(s) 58, 247, 881
BbvI GCAGC 3 cut(s) 441, 592, 787
BccI CCATC 2 cut(s) 479, 597
BceAI ACGGC 2 cut(s) 160, 400
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 770, 857
BfmI CTRYAG 4 cut(s) 11, 47, 337, 846
BisI GCNGC 3 cut(s) 430, 581, 801
BlsI GCNGC 3 cut(s) 431, 582, 802
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 165, 252
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 4 cut(s) 337, 348, 396, 703
BpiI GAAGAC 2 cut(s) 72, 147
BpuEI CTTGAG 2 cut(s) 89, 137
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 272
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 387, 418
BseLI CCNNNNNNNGG 2 cut(s) 154, 272
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 3 cut(s) 441, 592, 787
BseYI CCCAGC 1 cut(s) 910
Bsh1236I CGCG 2 cut(s) 219, 816
BshFI GGCC 3 cut(s) 89, 147, 254
BsiHKAI GWGCWC 3 cut(s) 58, 247, 881
BslFI GGGAC 4 cut(s) 171, 178, 536, 726
BslI CCNNNNNNNGG 2 cut(s) 154, 272
BsmAI GTCTC 2 cut(s) 770, 857
BsmBI CGTCTC 1 cut(s) 857
BsmFI GGGAC 4 cut(s) 171, 178, 536, 726
BsnI GGCC 3 cut(s) 89, 147, 254
Bsp1286I GDGCHC 3 cut(s) 58, 247, 881
Bsp143I GATC 2 cut(s) 685, 748
BspACI CCGC 2 cut(s) 204, 814
BspANI GGCC 3 cut(s) 89, 147, 254
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 2 cut(s) 219, 816
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 1 cut(s) 693
BssMI GATC 2 cut(s) 685, 748
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 5 cut(s) 112, 199, 550, 847, 868
BstC8I GCNNGC 2 cut(s) 243, 578
BstDEI CTNAG 2 cut(s) 171, 248
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 387, 418
BstFNI CGCG 2 cut(s) 219, 816
BstHHI GCGC 2 cut(s) 219, 429
BstKTI GATC 2 cut(s) 688, 751
BstMAI GTCTC 2 cut(s) 770, 857
BstMBI GATC 2 cut(s) 685, 748
BstMWI GCNNNNNNNGC 2 cut(s) 251, 806
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 2 cut(s) 427, 659
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 4 cut(s) 11, 47, 337, 846
BstUI CGCG 2 cut(s) 219, 816
BstV1I GCAGC 3 cut(s) 441, 592, 787
BstV2I GAAGAC 2 cut(s) 72, 147
BstXI CCANNNNNNTGG 1 cut(s) 318
BsuRI GGCC 3 cut(s) 89, 147, 254
BtsCI GGATG 2 cut(s) 387, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 243, 578
CfoI GCGC 2 cut(s) 219, 429
Cfr13I GGNCC 2 cut(s) 165, 252
CseI GACGC 2 cut(s) 208, 582
Csp6I GTAC 1 cut(s) 259
CviAII CATG 7 cut(s) 161, 344, 424, 482, 656, 902, 964
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 171, 248
DpnI GATC 2 cut(s) 687, 750
DpnII GATC 2 cut(s) 685, 748
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 483
EcoICRI GAGCTC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 857
FaeI CATG 7 cut(s) 164, 347, 427, 485, 659, 905, 967
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 569, 601
FaqI GGGAC 4 cut(s) 171, 178, 536, 726
FatI CATG 7 cut(s) 160, 343, 423, 481, 655, 901, 963
FauNDI CATATG 1 cut(s) 791
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 3 cut(s) 430, 581, 801
FokI GGATG 2 cut(s) 374, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 430, 581, 801
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 2 cut(s) 218, 428
GluI GCNGC 3 cut(s) 430, 581, 801
GsaI CCCAGC 1 cut(s) 914
HaeIII GGCC 3 cut(s) 89, 147, 254
HgaI GACGC 2 cut(s) 208, 582
HhaI GCGC 2 cut(s) 219, 429
Hin1II CATG 7 cut(s) 164, 347, 427, 485, 659, 905, 967
Hin6I GCGC 2 cut(s) 217, 427
HinP1I GCGC 2 cut(s) 217, 427
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 2 cut(s) 65, 524
HinfI GANTC 4 cut(s) 71, 119, 636, 947
HpaI GTTAAC 1 cut(s) 133
HphI GGTGA 2 cut(s) 194, 577
Hpy166II GTNNAC 4 cut(s) 133, 491, 694, 825
Hpy188I TCNGA 4 cut(s) 172, 513, 703, 919
Hpy188III TCNNGA 4 cut(s) 59, 391, 410, 743
Hpy8I GTNNAC 4 cut(s) 133, 491, 694, 825
Hpy99I CGWCG 2 cut(s) 215, 402
HpyAV CCTTC 4 cut(s) 31, 158, 525, 937
HpyCH4III ACNGT 5 cut(s) 112, 199, 550, 847, 868
HpyCH4V TGCA 4 cut(s) 350, 795, 803, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 806
HpyF3I CTNAG 2 cut(s) 171, 248
Hsp92II CATG 7 cut(s) 164, 347, 427, 485, 659, 905, 967
HspAI GCGC 2 cut(s) 217, 427
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 685, 748
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 3 cut(s) 441, 592, 787
LweI GCATC 4 cut(s) 337, 348, 396, 703
MaeIII GTNAC 2 cut(s) 106, 664
MalI GATC 2 cut(s) 687, 750
MboI GATC 2 cut(s) 685, 748
MboII GAAGA 4 cut(s) 72, 152, 357, 758
MfeI CAATTG 1 cut(s) 539
MhlI GDGCHC 3 cut(s) 58, 247, 881
MluCI AATT 4 cut(s) 91, 539, 621, 730
MlyI GAGTC 2 cut(s) 80, 956
MmeI TCCRAC 2 cut(s) 253, 299
MnlI CCTC 6 cut(s) 178, 262, 295, 387, 433, 564
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 2 cut(s) 219, 816
MwoI GCNNNNNNNGC 2 cut(s) 251, 806
NdeI CATATG 1 cut(s) 791
NdeII GATC 2 cut(s) 685, 748
NlaIII CATG 7 cut(s) 164, 347, 427, 485, 659, 905, 967
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 1 cut(s) 664
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 2 cut(s) 427, 659
PciI ACATGT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 119, 636
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 3 cut(s) 431, 582, 802
PleI GAGTC 2 cut(s) 79, 955
PpsI GAGTC 2 cut(s) 79, 955
PpuMI RGGWCCY 1 cut(s) 165
PscI ACATGT 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 910
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 165, 252
PspPPI RGGWCCY 1 cut(s) 165
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 3 cut(s) 430, 581, 801
Sau3AI GATC 2 cut(s) 685, 748
Sau96I GGNCC 2 cut(s) 165, 252
SchI GAGTC 2 cut(s) 80, 956
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 3 cut(s) 58, 247, 881
SfaNI GCATC 4 cut(s) 337, 348, 396, 703
SfcI CTRYAG 4 cut(s) 11, 47, 337, 846
SinI GGWCC 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 68, 152
SmoI CTYRAG 2 cut(s) 68, 152
Sse9I AATT 4 cut(s) 91, 539, 621, 730
SsiI CCGC 2 cut(s) 204, 814
SspI AATATT 1 cut(s) 841
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 5 cut(s) 112, 199, 550, 847, 868
TaqI TCGA 2 cut(s) 60, 213
TasI AATT 4 cut(s) 91, 539, 621, 730
TfiI GAWTC 2 cut(s) 119, 636
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 3 cut(s) 429, 580, 800
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 5 cut(s) 386, 429, 628, 741, 918
TspGWI ACGGA 1 cut(s) 875
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 427, 659
XmiI GTMKAC 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.