pycom03g21600

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012104
Physical Location & Seq
Forward (+)
21872988 .. 21877338
4351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21600.8

Sequence Viewer

Length: 1023 bp
ATGGAGAAGCTCAATCGTACGCAGCCTATTGGCTTTTGCCATAGGTTCTTCACCTTCATTGTGAATAGCCTTGTTGCTAGACGCCATGTTAAGCAAGTAACGTTAGGTCATCCGATGCCTCAAGACGAACAGCCTATGGCTCCAGCTGCTAACCCTAATGGGGTTGAGACAACGTGCCTTCATGAGGCTCGTCAAACGCCGGAGAAGGATTCAGGGCAATGTTTTCGGACACAAAGCAACATGAAGAAGGTTTCGAGCATTGAGGATGTACCAAAACTAGATAAAGAGAAAAATGGTTCAATGAGTAGTGAAAAGTTGACACTAGCAATGGAGATAGAAGACGAAAAATCAAAAGCTTTTATTCAGAGTAGAAAGGAAGCTATGAGGAGGAACAATGGCATTGAGCCGAGGCTTGCCCTTCCCACTCCAATGCAACAAGCTTATAGGGCCGGGATGCAAACTCCTACACTTGCCTTCGAGATTGTCCCCACCAAGTCCATGCTGGTTCCACCTGTGATGAACAGCCGTGATGTCCCCAGCCAAAACCAACAAAAACGGCGGCAAAGACCCCAAATGGTAAATTCGCTTCTGCTTCTGCACCAGCATCCACTCCTCCATTTTCTTAGTGGTTTTTCTCCTCTCTGTCTCTCGCTCTGTCTCGCTCTGTCTTCCACAGCGAGAAAGATGAAAGATTTACAGCTTTCGCTGAACCAAACCCAGAAGGTTCGGCTACAGAGAGCTCTCGAAAAGCACGAGTCTTTGTCTTCAAAGGCCAATTCCAACGCCTCCGTCACCGTCGCGGACTCCATCCCCGTTAACTACGAAGACGGCCTTCTCAAGGGACATGGGACCTCTGAGGTCAATGGGGAAGTTGTTGCGACGGTTTGCGGGGTCGTCGAGAGAGTCAATAAGCTAGTTTATGAGCGTTCTTTAAGGGCCAGGTACAAACCAGAGGTTGGAGATATCATAGTGGGGCGTGTAATTGAGTTGCTTTCTTTGTTGTGTATGTTGGTTTTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

341

Amino Acids

38.05

Weight (kDa)

9.4

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 956
AccII CGCG 1 cut(s) 800
AciI CCGC 3 cut(s) 559, 800, 888
AclI AACGTT 1 cut(s) 101
AcsI RAATTY 1 cut(s) 580
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 3 cut(s) 19, 270, 944
AfiI CCNNNNNNNGG 4 cut(s) 160, 184, 838, 956
AgsI TTSAA 2 cut(s) 300, 768
AjnI CCWGG 1 cut(s) 938
AluBI AGCT 8 cut(s) 10, 146, 356, 380, 440, 700, 740, 913
AluI AGCT 8 cut(s) 10, 146, 356, 380, 440, 700, 740, 913
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 3 cut(s) 161, 650, 662
AoxI GGCC 4 cut(s) 447, 771, 829, 936
ApeKI GCWGC 2 cut(s) 22, 146
ApoI RAATTY 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 447, 849, 936
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 43, 784
AvaII GGWCC 1 cut(s) 849
BanII GRGCYC 1 cut(s) 742
BarI GAAGNNNNNNTAC 2 cut(s) 570, 602
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 4 cut(s) 345, 660, 756, 831
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 2 cut(s) 34, 133
BccI CCATC 1 cut(s) 815
BceAI ACGGC 3 cut(s) 510, 572, 844
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 1 cut(s) 940
BcnI CCSGG 1 cut(s) 451
BcoDI GTCTC 3 cut(s) 161, 650, 662
BfaI CTAG 4 cut(s) 78, 278, 323, 914
BfmI CTRYAG 1 cut(s) 731
BisI GCNGC 3 cut(s) 23, 147, 560
BlsI GCNGC 3 cut(s) 24, 148, 561
Bme1390I CCNGG 2 cut(s) 451, 940
Bme18I GGWCC 1 cut(s) 849
BmgT120I GGNCC 3 cut(s) 447, 849, 936
BmiI GGNNCC 3 cut(s) 141, 507, 850
BmrFI CCNGG 2 cut(s) 451, 940
BmsI GCATC 3 cut(s) 105, 444, 613
BpiI GAAGAC 4 cut(s) 345, 660, 756, 831
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 105, 821
BpuMI CCSGG 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 184, 838, 956
Bse3DI GCAATG 2 cut(s) 224, 333
BseBI CCWGG 1 cut(s) 940
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 5 cut(s) 109, 271, 459, 604, 807
BseLI CCNNNNNNNGG 4 cut(s) 160, 184, 838, 956
BseMI GCAATG 2 cut(s) 224, 333
BseMII CTCAG 1 cut(s) 846
BseRI GAGGAG 3 cut(s) 400, 602, 627
BseXI GCAGC 2 cut(s) 34, 133
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 800
BshFI GGCC 4 cut(s) 449, 773, 831, 938
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 2 cut(s) 200, 450
BsiWI CGTACG 1 cut(s) 17
BslFI GGGAC 4 cut(s) 470, 518, 855, 862
BslI CCNNNNNNNGG 4 cut(s) 160, 184, 838, 956
BsmAI GTCTC 3 cut(s) 161, 650, 662
BsmFI GGGAC 4 cut(s) 470, 518, 855, 862
BsnI GGCC 4 cut(s) 449, 773, 831, 938
Bsp1286I GDGCHC 1 cut(s) 742
BspACI CCGC 3 cut(s) 559, 800, 888
BspANI GGCC 4 cut(s) 449, 773, 831, 938
BspCNI CTCAG 1 cut(s) 847
BspFNI CGCG 1 cut(s) 800
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 141, 507, 850
BsrDI GCAATG 2 cut(s) 224, 333
BssECI CCNNGG 1 cut(s) 407
BssNI GRCGYC 1 cut(s) 82
BssSI CACGAG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 940
Bst4CI ACNGT 2 cut(s) 796, 883
BstACI GRCGYC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 623, 855
BstENI CCTNNNNNAGG 2 cut(s) 182, 836
BstF5I GGATG 5 cut(s) 109, 271, 459, 604, 807
BstFNI CGCG 1 cut(s) 800
BstMAI GTCTC 3 cut(s) 161, 650, 662
BstMWI GCNNNNNNNGC 2 cut(s) 146, 446
BstNI CCWGG 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 449, 938
BstSFI CTRYAG 1 cut(s) 731
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 2 cut(s) 34, 133
BstV2I GAAGAC 4 cut(s) 345, 660, 756, 831
BsuRI GGCC 4 cut(s) 449, 773, 831, 938
BtsCI GGATG 5 cut(s) 109, 271, 459, 604, 807
Cac8I GCNNGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 447, 849, 936
CseI GACGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 18, 269, 943
CviAII CATG 5 cut(s) 86, 182, 241, 499, 845
CviQI GTAC 3 cut(s) 18, 269, 943
DdeI CTNAG 2 cut(s) 623, 855
Ecl136II GAGCTC 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 742
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 1 cut(s) 849
Eco53kI GAGCTC 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 740
EcoNI CCTNNNNNAGG 2 cut(s) 182, 836
EcoO109I RGGNCCY 1 cut(s) 849
EcoRII CCWGG 1 cut(s) 938
EcoRV GATATC 1 cut(s) 964
EcoT38I GRGCYC 1 cut(s) 742
FaeI CATG 5 cut(s) 89, 185, 244, 502, 848
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 4 cut(s) 470, 518, 855, 862
FatI CATG 5 cut(s) 85, 181, 240, 498, 844
FauI CCCGC 1 cut(s) 881
Fnu4HI GCNGC 3 cut(s) 23, 147, 560
FokI GGATG 5 cut(s) 96, 278, 466, 591, 794
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 3 cut(s) 23, 147, 560
FspBI CTAG 4 cut(s) 78, 278, 323, 914
GluI GCNGC 3 cut(s) 23, 147, 560
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 449, 773, 831, 938
HapII CCGG 2 cut(s) 200, 450
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 5 cut(s) 89, 185, 244, 502, 848
HincII GTYRAC 2 cut(s) 318, 817
HindII GTYRAC 2 cut(s) 318, 817
HindIII AAGCTT 2 cut(s) 354, 438
HinfI GANTC 4 cut(s) 209, 755, 803, 903
HpaI GTTAAC 1 cut(s) 817
HpaII CCGG 2 cut(s) 200, 450
HphI GGTGA 2 cut(s) 43, 784
Hpy166II GTNNAC 2 cut(s) 318, 817
Hpy188I TCNGA 4 cut(s) 114, 228, 366, 856
Hpy188III TCNNGA 5 cut(s) 122, 182, 478, 743, 898
Hpy8I GTNNAC 2 cut(s) 318, 817
Hpy99I CGWCG 3 cut(s) 800, 883, 899
HpyAV CCTTC 8 cut(s) 64, 188, 199, 241, 428, 484, 715, 842
HpyCH4III ACNGT 2 cut(s) 796, 883
HpyCH4IV ACGT 2 cut(s) 101, 173
HpyCH4V TGCA 3 cut(s) 433, 457, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 446
HpyF3I CTNAG 2 cut(s) 623, 855
HpySE526I ACGT 2 cut(s) 101, 173
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 5 cut(s) 89, 185, 244, 502, 848
KspAI GTTAAC 1 cut(s) 817
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 34, 133
LweI GCATC 3 cut(s) 105, 444, 613
MaeI CTAG 4 cut(s) 78, 278, 323, 914
MaeII ACGT 2 cut(s) 101, 173
MaeIII GTNAC 2 cut(s) 97, 790
MboII GAAGA 6 cut(s) 40, 256, 350, 660, 756, 836
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 3 cut(s) 580, 775, 981
MlyI GAGTC 3 cut(s) 764, 797, 912
MmeI TCCRAC 2 cut(s) 804, 937
MseI TTAA 3 cut(s) 90, 816, 932
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 200, 450
MspR9I CCNGG 2 cut(s) 451, 940
MvaI CCWGG 1 cut(s) 940
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 2 cut(s) 146, 446
NciI CCSGG 1 cut(s) 451
NlaIII CATG 5 cut(s) 89, 185, 244, 502, 848
NlaIV GGNNCC 3 cut(s) 141, 507, 850
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 790
PagI TCATGA 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PfeI GAWTC 1 cut(s) 209
Pfl23II CGTACG 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 956
PkrI GCNGC 3 cut(s) 24, 148, 561
PleI GAGTC 3 cut(s) 763, 797, 911
PpsI GAGTC 3 cut(s) 763, 797, 911
PpuMI RGGWCCY 1 cut(s) 849
Psp124BI GAGCTC 1 cut(s) 742
Psp1406I AACGTT 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 849
Psp6I CCWGG 1 cut(s) 938
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 1 cut(s) 938
PspLI CGTACG 1 cut(s) 17
PspN4I GGNNCC 3 cut(s) 141, 507, 850
PspPI GGNCC 3 cut(s) 447, 849, 936
PspPPI RGGWCCY 1 cut(s) 849
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 3 cut(s) 19, 270, 944
RsaNI GTAC 3 cut(s) 18, 269, 943
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 742
SaqAI TTAA 3 cut(s) 90, 816, 932
SatI GCNGC 3 cut(s) 23, 147, 560
Sau96I GGNCC 3 cut(s) 447, 849, 936
SchI GAGTC 3 cut(s) 764, 797, 912
ScrFI CCNGG 2 cut(s) 451, 940
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 3 cut(s) 105, 444, 613
SfcI CTRYAG 1 cut(s) 731
SinI GGWCC 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 120, 836
SmoI CTYRAG 2 cut(s) 120, 836
Sse9I AATT 3 cut(s) 580, 775, 981
SsiI CCGC 3 cut(s) 559, 800, 888
SspMI CTAG 4 cut(s) 78, 278, 323, 914
SstI GAGCTC 1 cut(s) 742
StyD4I CCNGG 2 cut(s) 449, 938
TaaI ACNGT 2 cut(s) 796, 883
TaiI ACGT 2 cut(s) 104, 176
TaqI TCGA 4 cut(s) 254, 477, 744, 897
TasI AATT 3 cut(s) 580, 775, 981
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 90, 816, 932
Tru9I TTAA 3 cut(s) 90, 816, 932
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 2 cut(s) 22, 146
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 5 cut(s) 46, 170, 257, 533, 701
TspGWI ACGGA 1 cut(s) 778
Van91I CCANNNNNTGG 1 cut(s) 956
VpaK11BI GGWCC 1 cut(s) 849
XagI CCTNNNNNAGG 2 cut(s) 182, 836
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 2 cut(s) 499, 623
XspI CTAG 4 cut(s) 78, 278, 323, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.