FvH4_2g24140

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012104
Physical Location & Seq
Forward (+)
19721732 .. 19724456
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24140.t1

Sequence Viewer

Length: 987 bp
ATGAGAGGGTTGCAGGTCTCCTTGAACCAAACCCAGAAGGTTCGCCTTCAGAGAGCTCTTGAAAAGCTCGAGTCTTTATCCTCAAAACCCAATTCCAATGCTTCTGTTATCGTTGCCGATTCCATCCCCGTTAACCACGAAGACGGACTTCTCAAGGGACATGGGACGTCTGAAGTTAACGGCGAGGTTGTTGCGACGGTTTGCGGCGTCGTCGAGAGGGTGAATAAGCTGGTTTATGTGCGTTCATTGAGAGCTAGGTATAAACCAGAGGTTGGAGATATTATTGTAGGACGTGTTATTGAGGTTGCTCCGAAACGTTGGAGAGTGGAGATAAACTATAGTCATGATGCAGTGTTGATGCTTTCATCGATGAACTTACCTGATGGTATCCAGAGGCGTCGAACTGCTCTGGATGAACTGAACATGCGCACTATTTTTGAAGAGAACGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAATACGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGAAAGCTTGGAAGGGGTCAGATGCTCACAGTCCCTCCTTATCTAGTGAAAAGACGCAAACAACATTTCCATAATTTGGATAAGTATGGAATTGACCTTATTCTTGGCTGCAATGGATTCATTTGGGTTGGTGAGCATGTTGAAATTACAGACGATATGGTTGTGGATCAAGTGAACAATTCCGAACAACAGAGTGCCAAATCTGATAAAAAAATTCTAAGCCCTGAAGAGCAAGAAAGAAGCTACACTCCCCAGGAGACAAGAGAGAACATCGTCAGGACTGCAAACGCTATTCGCGTACTGTCTGCTTTAGGTTTCAATATTACGGCTGAAGTGATCATGGATACGGTCGAGTTGAGCATTTCTCTTAAACAACAGGTCCCCATATATAAAATGCTTGGTGCAGAGTTCTGTGTTCTTGTTGCAGAAAAGGAAGCTGCAAGGAGAAGCGTGACTAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

329

Amino Acids

36.98

Weight (kDa)

8.9

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 86 - 157 1.1e-34 RRP4, S1 domain
KH_6 PF15985 179 - 219 5.2e-13 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 272, 595
AccII CGCG 1 cut(s) 816
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 316
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 5 cut(s) 32, 192, 483, 765, 870
AcyI GRCGYC 3 cut(s) 167, 207, 397
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 2 cut(s) 272, 595
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 6 cut(s) 25, 62, 440, 479, 662, 838
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 7 cut(s) 56, 67, 229, 254, 526, 762, 956
AluI AGCT 7 cut(s) 56, 67, 229, 254, 526, 762, 956
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 22, 770
AlwI GGATC 1 cut(s) 693
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 627, 956
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 2 cut(s) 232, 662
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 614, 943
BccI CCATC 3 cut(s) 131, 377, 479
BceAI ACGGC 2 cut(s) 196, 861
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 773
BciVI GTATCC 2 cut(s) 398, 856
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 2 cut(s) 22, 770
BfaI CTAG 2 cut(s) 255, 563
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 4
BfuI GTATCC 2 cut(s) 398, 856
BisI GCNGC 3 cut(s) 205, 628, 957
BlsI GCNGC 3 cut(s) 206, 629, 958
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 1 cut(s) 898
BmeT110I CYCGRG 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 1 cut(s) 900
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 3 cut(s) 337, 348, 531
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 368
BsaHI GRCGYC 3 cut(s) 167, 207, 397
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 595
Bse3DI GCAATG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 773
BseCI ATCGAT 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 2 cut(s) 123, 418
BseLI CCNNNNNNNGG 2 cut(s) 272, 595
BseMI GCAATG 1 cut(s) 637
BseXI GCAGC 2 cut(s) 614, 943
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 816
Bsh1285I CGRYCG 1 cut(s) 870
BshVI ATCGAT 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 68
BslFI GGGAC 4 cut(s) 171, 178, 536, 884
BslI CCNNNNNNNGG 2 cut(s) 272, 595
BsmAI GTCTC 2 cut(s) 22, 770
BsmFI GGGAC 4 cut(s) 171, 178, 536, 884
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 685, 855
BspACI CCGC 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 368
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 900
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 1 cut(s) 693
BspQI GCTCTTC 1 cut(s) 741
BspTNI GGTCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 2 cut(s) 685, 855
BssNI GRCGYC 3 cut(s) 167, 207, 397
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 4 cut(s) 199, 550, 822, 868
Bst6I CTCTTC 2 cut(s) 435, 741
BstACI GRCGYC 3 cut(s) 167, 207, 397
BstDEI CTNAG 1 cut(s) 737
BstF5I GGATG 2 cut(s) 123, 418
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 2 cut(s) 688, 858
BstMAI GTCTC 2 cut(s) 22, 770
BstMBI GATC 2 cut(s) 685, 855
BstMCI CGRYCG 1 cut(s) 870
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 2 cut(s) 427, 659
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 337
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 614, 943
BstV2I GAAGAC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 368
BsuI GTATCC 2 cut(s) 398, 856
BsuTUI ATCGAT 1 cut(s) 368
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 123, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 4
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 898
ClaI ATCGAT 1 cut(s) 368
CseI GACGC 3 cut(s) 196, 386, 582
Csp6I GTAC 1 cut(s) 818
CviAII CATG 5 cut(s) 161, 344, 424, 656, 859
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 1 cut(s) 737
DpnI GATC 2 cut(s) 687, 857
DpnII GATC 2 cut(s) 685, 855
Eam1104I CTCTTC 2 cut(s) 435, 741
EarI CTCTTC 2 cut(s) 435, 741
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 898
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 5 cut(s) 32, 192, 483, 765, 870
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 898
EcoRII CCWGG 1 cut(s) 771
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 5 cut(s) 164, 347, 427, 659, 862
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 4 cut(s) 171, 178, 536, 884
FatI CATG 5 cut(s) 160, 343, 423, 655, 858
FbaI TGATCA 1 cut(s) 855
Fnu4HI GCNGC 3 cut(s) 205, 628, 957
FokI GGATG 2 cut(s) 110, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 205, 628, 957
FspAI RTGCGCAY 1 cut(s) 428
FspBI CTAG 2 cut(s) 255, 563
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 1 cut(s) 428
GluI GCNGC 3 cut(s) 205, 628, 957
HgaI GACGC 3 cut(s) 196, 386, 582
HhaI GCGC 1 cut(s) 429
Hin1I GRCGYC 3 cut(s) 167, 207, 397
Hin1II CATG 5 cut(s) 164, 347, 427, 659, 862
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 2 cut(s) 133, 178
HindII GTYRAC 2 cut(s) 133, 178
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 71, 119, 636
HpaI GTTAAC 2 cut(s) 133, 178
HphI GGTGA 2 cut(s) 232, 662
Hpy166II GTNNAC 4 cut(s) 133, 178, 491, 694
Hpy188I TCNGA 7 cut(s) 51, 172, 312, 513, 540, 703, 724
Hpy188III TCNNGA 6 cut(s) 59, 214, 344, 391, 410, 796
Hpy8I GTNNAC 4 cut(s) 133, 178, 491, 694
Hpy99I CGWCG 4 cut(s) 199, 212, 215, 402
HpyAV CCTTC 3 cut(s) 31, 56, 525
HpyCH4III ACNGT 4 cut(s) 199, 550, 822, 868
HpyCH4IV ACGT 3 cut(s) 167, 292, 316
HpyCH4V TGCA 7 cut(s) 13, 350, 630, 803, 923, 944, 959
HpyF3I CTNAG 1 cut(s) 737
HpySE526I ACGT 3 cut(s) 167, 292, 316
Hsp92I GRCGYC 3 cut(s) 167, 207, 397
Hsp92II CATG 5 cut(s) 164, 347, 427, 659, 862
HspAI GCGC 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 855
KspAI GTTAAC 2 cut(s) 133, 178
Kzo9I GATC 2 cut(s) 685, 855
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 2 cut(s) 614, 943
LweI GCATC 3 cut(s) 337, 348, 531
MaeI CTAG 2 cut(s) 255, 563
MaeII ACGT 3 cut(s) 167, 292, 316
MaeIII GTNAC 1 cut(s) 970
MalI GATC 2 cut(s) 687, 857
MboI GATC 2 cut(s) 685, 855
MboII GAAGA 3 cut(s) 152, 452, 758
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 6 cut(s) 91, 592, 609, 663, 697, 732
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 253, 299
MnlI CCTC 7 cut(s) 91, 178, 210, 262, 295, 387, 564
MseI TTAA 3 cut(s) 132, 177, 888
MspR9I CCNGG 1 cut(s) 773
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 1 cut(s) 816
NdeII GATC 2 cut(s) 685, 855
NlaIII CATG 5 cut(s) 164, 347, 427, 659, 862
NlaIV GGNNCC 1 cut(s) 900
NmuCI GTSAC 1 cut(s) 970
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 2 cut(s) 427, 659
PaeR7I CTCGAG 1 cut(s) 68
PagI TCATGA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 741
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PfeI GAWTC 2 cut(s) 119, 636
PflMI CCANNNNNTGG 2 cut(s) 272, 595
PkrI GCNGC 3 cut(s) 206, 629, 958
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 898
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 1 cut(s) 900
PspPI GGNCC 1 cut(s) 898
PspPPI RGGWCCY 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 68
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
SacI GAGCTC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 3 cut(s) 132, 177, 888
SatI GCNGC 3 cut(s) 205, 628, 957
Sau3AI GATC 2 cut(s) 685, 855
Sau96I GGNCC 1 cut(s) 898
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 3 cut(s) 337, 348, 531
SfcI CTRYAG 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 898
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 68, 152
SmoI CTYRAG 2 cut(s) 68, 152
Sse9I AATT 6 cut(s) 91, 592, 609, 663, 697, 732
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 841
SspMI CTAG 2 cut(s) 255, 563
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 771
TaaI ACNGT 4 cut(s) 199, 550, 822, 868
TaiI ACGT 3 cut(s) 170, 295, 319
TaqI TCGA 5 cut(s) 69, 213, 368, 400, 870
TasI AATT 6 cut(s) 91, 592, 609, 663, 697, 732
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 119, 636
Tru1I TTAA 3 cut(s) 132, 177, 888
Tru9I TTAA 3 cut(s) 132, 177, 888
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 970
TseI GCWGC 2 cut(s) 627, 956
Tsp45I GTSAC 1 cut(s) 970
TspDTI ATGAA 5 cut(s) 234, 354, 386, 429, 628
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 2 cut(s) 272, 595
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 1 cut(s) 732
XceI RCATGY 2 cut(s) 427, 659
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 2 cut(s) 255, 563
ZraI GACGTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.