Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Forward (+)

35507231 .. 35509189

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0221900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCTGATAATAATCCTGGAACTTTGGGGCATTATAATCCATATTGCAGTAGTTATGTAGCACCTTATGGATATAGATATGGTGCTGGGTTTTTGCATGATCTGAATCCTTATAATGCTTGGGTATATACAACTGATTATGGCGTATGGGGTGGCCAAAATGCTAACGACTCCAATATCCGAAGCTGGACGGAGCTCCCTGATGATGTTACCGCAATGATACTGTCACGTCTTGGAGCAATTGAGATCTTGAAAACTGCTCAGAAGGTTTGCATGACATGGCGCAAAATAAGCAAGGACCCTCTTGTGTGGTGCAGAATCGACTTGCACCATGATGGTTCTTATTATAGTCCCTATGTGCACCAACAGTTGGACAAAATGTGCCGCCAAGCCATTGATCGTAGCTGTGCTAATCTGGTCGATATCAGCATCCAGGACTTTGGCAATGATGCACTTCTTGAGTATATCACTGATAGTTCACCTAGAATCAGACGTCTTCGTTTGGATAGTTGCCCAGTAACTGACAAGGGATTAAGTAAAGTAGCTTCCAAACTTCCGCTGCTGGAGGACCTCGAAATTTCACACACAAACTCTTGCTCACGCGAATCTCTTGAAGCAATAGGGCGCTCTTGCCCTCTCTTAACATCATTCAAGTATAAGGACGGATGGCAGGTATGGTTCAAATTTGATGATACTAATGAACAAGCACTTGCCATAGCCGGAACAATGCATGGTTTACGCCACCTCCAGCTTTTAGGGAATGCGGTGACTACTGATGGATTGGCCAAGATCCTTGATTCTTGTCCTCATCTCGAGTCACTTGATCTGAGATATTGTTTCAATCTTAATTTGGGAGGGGATTTGCAGAGAAGATGTTCTACACAAGTTAAAACACTTCAAACTTCCGGAGGATCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

306

Amino Acids

34.37

Weight (kDa)

6.13

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	63 - 109	2.9e-08	F-box-like
F-box	PF00646	63 - 105	1.6e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	36, 114
AatII	GACGTC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	905
AciI	CCGC	4 cut(s)	213, 385, 557, 764
AclWI	GGATC	2 cut(s)	784, 919
AcoI	YGGCCR	2 cut(s)	154, 783
AcsI	RAATTY	2 cut(s)	576, 683
AcyI	GRCGYC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	6 cut(s)	253, 614, 652, 682, 841, 899
AjiI	CACGTC	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	16, 432
AluBI	AGCT	5 cut(s)	186, 196, 405, 545, 751
AluI	AGCT	5 cut(s)	186, 196, 405, 545, 751
Alw21I	GWGCWC	2 cut(s)	198, 363
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	784, 919
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	812
Aor13HI	TCCGGA	1 cut(s)	905
AoxI	GGCC	2 cut(s)	154, 783
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	2 cut(s)	576, 683
Asp700I	GAANNNNTTC	1 cut(s)	874
AspLEI	GCGC	2 cut(s)	285, 627
AspS9I	GGNCC	2 cut(s)	298, 568
AsuHPI	GGTGA	2 cut(s)	471, 778
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	2 cut(s)	298, 568
BaeGI	GKGCMC	1 cut(s)	363
BalI	TGGCCA	2 cut(s)	156, 785
BanII	GRGCYC	1 cut(s)	198
BarI	GAAGNNNNNNTAC	4 cut(s)	529, 561, 862, 894
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	198, 363
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	3 cut(s)	329, 660, 770
BciT130I	CCWGG	2 cut(s)	18, 434
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	661
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	2 cut(s)	385, 560
BlsI	GCNGC	2 cut(s)	386, 561
Bme1390I	CCNGG	2 cut(s)	18, 434
Bme18I	GGWCC	2 cut(s)	298, 568
BmeT110I	CYCGRG	1 cut(s)	812
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	298, 568
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	18, 434
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	438, 439
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	584, 731
BpuEI	CTTGAG	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	12, 105
BsaHI	GRCGYC	1 cut(s)	493
BsaWI	WCCGGW	1 cut(s)	905
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	2 cut(s)	222, 451
Bse8I	GATNNNNATC	2 cut(s)	12, 105
BseAI	TCCGGA	1 cut(s)	905
BseBI	CCWGG	2 cut(s)	18, 434
BseGI	GGATG	2 cut(s)	429, 671
BseJI	GATNNNNATC	2 cut(s)	12, 105
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	2 cut(s)	222, 451
BseMII	CTCAG	2 cut(s)	275, 818
BseNI	ACTGG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	546
BseYI	CCCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	156, 785
BsiHKAI	GWGCWC	2 cut(s)	198, 363
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	2 cut(s)	720, 906
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	156, 785
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	2 cut(s)	198, 363
Bsp13I	TCCGGA	1 cut(s)	905
Bsp143I	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
BspACI	CCGC	4 cut(s)	213, 385, 557, 764
BspANI	GGCC	2 cut(s)	156, 785
BspCNI	CTCAG	2 cut(s)	274, 819
BspEI	TCCGGA	1 cut(s)	905
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	784, 919
BsrDI	GCAATG	2 cut(s)	222, 451
BsrI	ACTGG	1 cut(s)	515
BssMI	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
BssNI	GRCGYC	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	18, 434
Bst4CI	ACNGT	2 cut(s)	225, 369
BstACI	GRCGYC	1 cut(s)	493
BstDEI	CTNAG	2 cut(s)	261, 827
BstF5I	GGATG	2 cut(s)	429, 671
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	285, 627
BstKTI	GATC	6 cut(s)	103, 249, 400, 792, 826, 914
BstMBI	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	2 cut(s)	18, 434
BstSCI	CCNGG	2 cut(s)	16, 432
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	546
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	246, 789
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	2 cut(s)	246, 789
BsuRI	GGCC	2 cut(s)	156, 785
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	429, 671
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	661
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	2 cut(s)	285, 627
Cfr13I	GGNCC	2 cut(s)	298, 568
CviAII	CATG	5 cut(s)	98, 274, 279, 332, 731
CviJI	RGCY	9 cut(s)	156, 186, 196, 392, 405, 545, 719, 751, 785
CviKI_1	RGCY	9 cut(s)	156, 186, 196, 392, 405, 545, 719, 751, 785
DdeI	CTNAG	2 cut(s)	261, 827
DpnI	GATC	6 cut(s)	102, 248, 399, 791, 825, 913
DpnII	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
EaeI	YGGCCR	2 cut(s)	154, 783
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	298, 568
Eco53kI	GAGCTC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	298, 568
EcoRII	CCWGG	2 cut(s)	16, 432
EcoRV	GATATC	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	5 cut(s)	101, 277, 282, 335, 734
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	5 cut(s)	97, 273, 278, 331, 730
Fnu4HI	GCNGC	2 cut(s)	385, 560
FokI	GGATG	2 cut(s)	416, 678
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	385, 560
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	284, 626
GluI	GCNGC	2 cut(s)	385, 560
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	584, 731
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	156, 785
HapII	CCGG	2 cut(s)	720, 906
HhaI	GCGC	2 cut(s)	285, 627
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	5 cut(s)	101, 277, 282, 335, 734
Hin6I	GCGC	2 cut(s)	283, 625
HinP1I	GCGC	2 cut(s)	283, 625
HinfI	GANTC	7 cut(s)	106, 170, 318, 486, 605, 797, 815
HpaII	CCGG	2 cut(s)	720, 906
HphI	GGTGA	2 cut(s)	471, 778
Hpy166II	GTNNAC	3 cut(s)	361, 479, 737
Hpy188I	TCNGA	6 cut(s)	7, 105, 182, 264, 491, 828
Hpy188III	TCNNGA	5 cut(s)	250, 458, 611, 812, 906
Hpy8I	GTNNAC	3 cut(s)	361, 479, 737
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	225, 369
HpyCH4IV	ACGT	2 cut(s)	229, 493
HpyCH4V	TGCA	9 cut(s)	48, 97, 273, 315, 328, 361, 452, 730, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	261, 827
HpySE526I	ACGT	2 cut(s)	229, 493
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	5 cut(s)	101, 277, 282, 335, 734
HspAI	GCGC	2 cut(s)	283, 625
Kpn2I	TCCGGA	1 cut(s)	905
Kzo9I	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
LmnI	GCTCC	3 cut(s)	193, 201, 236
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	2 cut(s)	438, 439
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	229, 493
MaeIII	GTNAC	5 cut(s)	208, 225, 517, 766, 816
MalI	GATC	6 cut(s)	102, 248, 399, 791, 825, 913
MboI	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
MboII	GAAGA	2 cut(s)	488, 882
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	246, 789
MhlI	GDGCHC	2 cut(s)	198, 363
MlsI	TGGCCA	2 cut(s)	156, 785
MluCI	AATT	4 cut(s)	240, 576, 683, 847
MluNI	TGGCCA	2 cut(s)	156, 785
MlyI	GAGTC	2 cut(s)	164, 824
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	312, 559, 581, 645, 755, 816, 848, 902
Mox20I	TGGCCA	2 cut(s)	156, 785
Mph1103I	ATGCAT	1 cut(s)	732
MroI	TCCGGA	1 cut(s)	905
MroXI	GAANNNNTTC	1 cut(s)	874
MscI	TGGCCA	2 cut(s)	156, 785
MseI	TTAA	4 cut(s)	533, 641, 846, 888
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	2 cut(s)	156, 785
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	2 cut(s)	720, 906
MspR9I	CCNGG	2 cut(s)	18, 434
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	2 cut(s)	18, 434
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	291
NdeII	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
NlaIII	CATG	5 cut(s)	101, 277, 282, 335, 734
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	3 cut(s)	225, 766, 816
NsiI	ATGCAT	1 cut(s)	732
PaeR7I	CTCGAG	1 cut(s)	812
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	5 cut(s)	106, 318, 486, 605, 797
PflMI	CCANNNNNTGG	1 cut(s)	370
PfoI	TCCNGGA	2 cut(s)	16, 432
PkrI	GCNGC	2 cut(s)	386, 561
PleI	GAGTC	2 cut(s)	164, 823
PpsI	GAGTC	2 cut(s)	164, 823
PpuMI	RGGWCCY	2 cut(s)	298, 568
PsiI	TTATAA	2 cut(s)	36, 114
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	2 cut(s)	298, 568
Psp6I	CCWGG	2 cut(s)	16, 432
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	16, 432
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	298, 568
PspPPI	RGGWCCY	2 cut(s)	298, 568
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	246, 789
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	533, 641, 846, 888
SatI	GCNGC	2 cut(s)	385, 560
Sau3AI	GATC	6 cut(s)	100, 246, 397, 789, 823, 911
Sau96I	GGNCC	2 cut(s)	298, 568
SchI	GAGTC	2 cut(s)	164, 824
ScrFI	CCNGG	2 cut(s)	18, 434
SduI	GDGCHC	2 cut(s)	198, 363
SfaNI	GCATC	2 cut(s)	438, 439
Sfr274I	CTCGAG	1 cut(s)	812
SinI	GGWCC	2 cut(s)	298, 568
SlaI	CTCGAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	458, 812
SmoI	CTYRAG	2 cut(s)	458, 812
Sse9I	AATT	4 cut(s)	240, 576, 683, 847
SsiI	CCGC	4 cut(s)	213, 385, 557, 764
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	16, 432
TaaI	ACNGT	2 cut(s)	225, 369
TaiI	ACGT	2 cut(s)	232, 496
TaqI	TCGA	4 cut(s)	321, 420, 573, 813
TasI	AATT	4 cut(s)	240, 576, 683, 847
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	5 cut(s)	106, 318, 486, 605, 797
Tru1I	TTAA	4 cut(s)	533, 641, 846, 888
Tru9I	TTAA	4 cut(s)	533, 641, 846, 888
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	3 cut(s)	225, 766, 816
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	3 cut(s)	225, 766, 816
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	2 cut(s)	206, 678
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	298, 568
XapI	RAATTY	2 cut(s)	576, 683
XhoI	CTCGAG	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	874
XspI	CTAG	1 cut(s)	483
ZraI	GACGTC	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.