Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Reverse (-)

41178580 .. 41179644

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1291900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCGTCTCATCGACATCTCATGGCCTCCTGTCTCTCCTCCTCCTCATCCTCATCCACCTTCTCGTCTTCCTCCACTACCCCACCCATGTTGCCGCCACCACAGGCATCCGCCTTGGCATCATCCGGAAACCTTCTCCAAATGTTGCCATCTTTCGAGAAGCACCAGCTTTCCAAAACATGGATGCATGCGAGCATGCAGAGAAAATTCACATCGCCATGACACTTGACTCCAATTACCTAAGAGGCACCATGGCGGCCATGCTTTCAATACTGCAGCACTCGATGTGCCCAGGGATTGTCGAGTTCCACTTTCTCTGGGCACGGTTCGACCCGGAGGTGCTCTCCAACATCCAATCCACCTTCCCCTACCTCAAATTCAATGTCTACCGCTTCGATTCGAATAGGGTACGTGGGAAAATATCAAAGTCGATACGCCAAGCCTTGGACCAACCCTTAAACTATGCACGTATTTACCTAGCCGACATACTTCCAGTTGATGTGAAGAGGGTTCTATACCTAGACTCGGACCTTGTGGTTGTGGATGACGTGGCAAAGTTATGGAAGGTTGACTTGCAAGGGAAGGTATTGGCAGCGCCAGAATATTGCCATGCAAACTTCACCCAATATTTCACAGAATCGTTTTGGTCCGACAGTGAAATGTCCAAAACGTTTGAGGGCAGAAATCCTTGCTATTTCAACACAGGGGTGATGGTGGTGGACGTGGATAAATGGAGACAAGGTGAATACACTAAGAAAATGGAGGAGTGGATGGTGGTGCAGAAGCAGAAGCGAATTTACCATTTGGGGTCTTTGCCGCCATTTTTGTTGGTTTTGGCCGGAGACATCACGGCCGTTCATCACAGGTGGAATCAGCATGGACTCGGTGGGGACAATCTCGAAGGCAAGTGTAGGAGTTTGCATCCTGGCCCTATAAGCCTGTTGCATTGGAGTGGGAAGGGCAAGCCCTGGTTGAGGTTAGATTCAAGAAAGCCATGCACCGTTGATCATCTGTGGGCCCCATATGATCTCTACCGTTCATCAGCTCATCATTTTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

355

Amino Acids

40.58

Weight (kDa)

8.42

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	71 - 326	4.4e-57	Glycosyl transferase family 8
Glyco_transf_24	PF18404	84 - 253	2.8e-10	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	181, 445
AccI	GTMKAC	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	5 cut(s)	96, 112, 257, 391, 818
AclI	AACGTT	1 cut(s)	671
AcoI	YGGCCR	4 cut(s)	3, 258, 837, 852
AcsI	RAATTY	3 cut(s)	207, 377, 795
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	181, 445, 526, 975
AgsI	TTSAA	5 cut(s)	270, 382, 700, 987, 1058
AjiI	CACGTC	2 cut(s)	550, 724
AjnI	CCWGG	3 cut(s)	292, 925, 968
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	2 cut(s)	170, 1046
AluI	AGCT	2 cut(s)	170, 1046
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	4 cut(s)	13, 39, 730, 837
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	7 cut(s)	3, 25, 258, 837, 852, 928, 1017
ApaI	GGGCCC	1 cut(s)	1021
ApeKI	GCWGC	2 cut(s)	277, 593
ApoI	RAATTY	3 cut(s)	207, 377, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	6 cut(s)	448, 529, 648, 929, 1017, 1018
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	613, 721, 755
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	3 cut(s)	448, 529, 648
BaeGI	GKGCMC	3 cut(s)	293, 325, 1021
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	1021
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	289, 605
BccI	CCATC	3 cut(s)	158, 706, 766
BceAI	ACGGC	2 cut(s)	839, 867
BciT130I	CCWGG	3 cut(s)	294, 927, 970
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	4 cut(s)	13, 39, 730, 837
BfaI	CTAG	2 cut(s)	479, 521
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	599
BisI	GCNGC	5 cut(s)	96, 258, 278, 594, 818
BlsI	GCNGC	5 cut(s)	97, 259, 279, 595, 819
Bme1390I	CCNGG	4 cut(s)	294, 335, 927, 970
Bme18I	GGWCC	3 cut(s)	448, 529, 648
BmgBI	CACGTC	2 cut(s)	550, 724
BmgT120I	GGNCC	6 cut(s)	448, 529, 648, 929, 1017, 1018
BmiI	GGNNCC	3 cut(s)	250, 1019, 1020
BmrFI	CCNGG	4 cut(s)	294, 335, 927, 970
BmsI	GCATC	4 cut(s)	117, 129, 175, 931
BpiI	GAAGAC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	2 cut(s)	413, 470
BsaJI	CCNNGG	6 cut(s)	115, 252, 292, 293, 444, 968
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	727, 757
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 445, 526, 975
Bse1I	ACTGG	1 cut(s)	494
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	294, 927, 970
BseDI	CCNNGG	6 cut(s)	115, 252, 292, 293, 444, 968
BseGI	GGATG	9 cut(s)	48, 54, 108, 123, 190, 351, 550, 777, 922
BseLI	CCNNNNNNNGG	4 cut(s)	181, 445, 526, 975
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	4 cut(s)	29, 32, 35, 779
BseSI	GKGCMC	3 cut(s)	293, 325, 1021
BseX3I	CGGCCG	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	289, 605
BsgI	GTGCAG	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	7 cut(s)	5, 27, 260, 839, 854, 930, 1019
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	855
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	127, 335, 840
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	4 cut(s)	181, 445, 526, 975
BsmAI	GTCTC	4 cut(s)	13, 39, 730, 837
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	905
BsnI	GGCC	7 cut(s)	5, 27, 260, 839, 854, 930, 1019
Bsp119I	TTCGAA	1 cut(s)	401
Bsp120I	GGGCCC	1 cut(s)	1017
Bsp1286I	GDGCHC	4 cut(s)	293, 325, 345, 1021
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	1006, 1027
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	5 cut(s)	96, 112, 257, 391, 818
BspANI	GGCC	7 cut(s)	5, 27, 260, 839, 854, 930, 1019
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	250, 1019, 1020
BspMAI	CTGCAG	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	6 cut(s)	115, 252, 292, 293, 444, 968
BssMI	GATC	2 cut(s)	1006, 1027
BssT1I	CCWWGG	3 cut(s)	115, 252, 444
Bst2UI	CCWGG	3 cut(s)	294, 927, 970
Bst4CI	ACNGT	4 cut(s)	327, 656, 1003, 1037
Bst6I	CTCTTC	1 cut(s)	500
BstBAI	YACGTR	2 cut(s)	413, 470
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	4 cut(s)	190, 194, 198, 965
BstDEI	CTNAG	2 cut(s)	242, 753
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	973
BstF5I	GGATG	9 cut(s)	48, 54, 108, 123, 190, 351, 550, 777, 922
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	2 cut(s)	1009, 1030
BstMAI	GTCTC	4 cut(s)	13, 39, 730, 837
BstMBI	GATC	2 cut(s)	1006, 1027
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	1 cut(s)	936
BstNI	CCWGG	3 cut(s)	294, 927, 970
BstNSI	RCATGY	2 cut(s)	192, 200
BstSCI	CCNGG	4 cut(s)	292, 333, 925, 968
BstSFI	CTRYAG	1 cut(s)	275
BstSLI	GKGCMC	3 cut(s)	293, 325, 1021
BstV1I	GCAGC	2 cut(s)	289, 605
BstV2I	GAAGAC	1 cut(s)	61
BstZI	CGGCCG	1 cut(s)	852
BsuRI	GGCC	7 cut(s)	5, 27, 260, 839, 854, 930, 1019
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	2 cut(s)	550, 724
BtsCI	GGATG	9 cut(s)	48, 54, 108, 123, 190, 351, 550, 777, 922
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	190, 194, 198, 965
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	6 cut(s)	448, 529, 648, 929, 1017, 1018
Csp6I	GTAC	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	2 cut(s)	242, 753
DpnI	GATC	2 cut(s)	1008, 1029
DpnII	GATC	2 cut(s)	1006, 1027
EaeI	YGGCCR	4 cut(s)	3, 258, 837, 852
EagI	CGGCCG	1 cut(s)	852
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	852
Eco130I	CCWWGG	3 cut(s)	115, 252, 444
Eco24I	GRGCYC	1 cut(s)	1021
Eco47I	GGWCC	3 cut(s)	448, 529, 648
Eco52I	CGGCCG	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	973
EcoO109I	RGGNCCY	1 cut(s)	1018
EcoRII	CCWGG	3 cut(s)	292, 925, 968
EcoT14I	CCWWGG	3 cut(s)	115, 252, 444
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	1021
ErhI	CCWWGG	3 cut(s)	115, 252, 444
Esp3I	CGTCTC	1 cut(s)	13
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	905
FauNDI	CATATG	1 cut(s)	1024
FbaI	TGATCA	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	96, 258, 278, 594, 818
FokI	GGATG	9 cut(s)	35, 41, 95, 110, 197, 338, 557, 784, 909
FriOI	GRGCYC	1 cut(s)	1021
Fsp4HI	GCNGC	5 cut(s)	96, 258, 278, 594, 818
FspBI	CTAG	2 cut(s)	479, 521
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	5 cut(s)	96, 258, 278, 594, 818
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	7 cut(s)	5, 27, 260, 839, 854, 930, 1019
HapII	CCGG	3 cut(s)	127, 335, 840
HhaI	GCGC	1 cut(s)	598
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	7 cut(s)	230, 398, 524, 638, 871, 882, 983
HpaII	CCGG	3 cut(s)	127, 335, 840
HphI	GGTGA	3 cut(s)	613, 721, 755
Hpy166II	GTNNAC	3 cut(s)	388, 571, 721
Hpy188I	TCNGA	2 cut(s)	529, 652
Hpy188III	TCNNGA	4 cut(s)	127, 158, 899, 987
Hpy8I	GTNNAC	3 cut(s)	388, 571, 721
HpyAV	CCTTC	7 cut(s)	71, 144, 373, 559, 577, 896, 952
HpyCH4III	ACNGT	4 cut(s)	327, 656, 1003, 1037
HpyCH4IV	ACGT	5 cut(s)	412, 469, 549, 671, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	936
HpyF3I	CTNAG	2 cut(s)	242, 753
HpySE526I	ACGT	5 cut(s)	412, 469, 549, 671, 723
HspAI	GCGC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	2 cut(s)	1006, 1027
Lsp1109I	GCAGC	2 cut(s)	289, 605
LweI	GCATC	4 cut(s)	117, 129, 175, 931
MaeI	CTAG	2 cut(s)	479, 521
MaeII	ACGT	5 cut(s)	412, 469, 549, 671, 723
MalI	GATC	2 cut(s)	1008, 1029
MboI	GATC	2 cut(s)	1006, 1027
MboII	GAAGA	2 cut(s)	61, 517
MhlI	GDGCHC	4 cut(s)	293, 325, 345, 1021
MluCI	AATT	4 cut(s)	207, 235, 377, 795
MlyI	GAGTC	3 cut(s)	224, 518, 876
MmeI	TCCRAC	2 cut(s)	372, 675
Mph1103I	ATGCAT	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	126
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	3 cut(s)	218, 707, 951
MspI	CCGG	3 cut(s)	127, 335, 840
MspR9I	CCNGG	4 cut(s)	294, 335, 927, 970
MvaI	CCWGG	3 cut(s)	294, 927, 970
MwoI	GCNNNNNNNGC	1 cut(s)	936
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	252
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	2 cut(s)	1006, 1027
NlaIV	GGNNCC	3 cut(s)	250, 1019, 1020
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	2 cut(s)	192, 200
NspV	TTCGAA	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	707
PaeI	GCATGC	2 cut(s)	192, 200
PasI	CCCWGGG	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	398, 638, 871, 983
PflMI	CCANNNNNTGG	2 cut(s)	181, 445
PkrI	GCNGC	5 cut(s)	97, 259, 279, 595, 819
PleI	GAGTC	3 cut(s)	224, 518, 876
PpsI	GAGTC	3 cut(s)	224, 518, 876
Ppu21I	YACGTR	2 cut(s)	413, 470
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	3 cut(s)	292, 925, 968
PspGI	CCWGG	3 cut(s)	292, 925, 968
PspN4I	GGNNCC	3 cut(s)	250, 1019, 1020
PspOMI	GGGCCC	1 cut(s)	1017
PspPI	GGNCC	6 cut(s)	448, 529, 648, 929, 1017, 1018
PstI	CTGCAG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	3 cut(s)	218, 707, 951
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	5 cut(s)	96, 258, 278, 594, 818
Sau3AI	GATC	2 cut(s)	1006, 1027
Sau96I	GGNCC	6 cut(s)	448, 529, 648, 929, 1017, 1018
SchI	GAGTC	3 cut(s)	224, 518, 876
ScrFI	CCNGG	4 cut(s)	294, 335, 927, 970
SduI	GDGCHC	4 cut(s)	293, 325, 345, 1021
SfaNI	GCATC	4 cut(s)	117, 129, 175, 931
SfcI	CTRYAG	1 cut(s)	275
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	3 cut(s)	448, 529, 648
SmiMI	CAYNNNNRTG	3 cut(s)	218, 707, 951
SphI	GCATGC	2 cut(s)	192, 200
Sse9I	AATT	4 cut(s)	207, 235, 377, 795
SsiI	CCGC	5 cut(s)	96, 112, 257, 391, 818
SspI	AATATT	2 cut(s)	605, 629
SspMI	CTAG	2 cut(s)	479, 521
StyD4I	CCNGG	4 cut(s)	292, 333, 925, 968
StyI	CCWWGG	3 cut(s)	115, 252, 444
TaaI	ACNGT	4 cut(s)	327, 656, 1003, 1037
TaiI	ACGT	5 cut(s)	415, 472, 552, 674, 726
TaqI	TCGA	9 cut(s)	14, 157, 284, 303, 330, 396, 401, 431, 900
TasI	AATT	4 cut(s)	207, 235, 377, 795
TauI	GCSGC	3 cut(s)	98, 260, 820
TfiI	GAWTC	4 cut(s)	398, 638, 871, 983
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	2 cut(s)	277, 593
TspDTI	ATGAA	2 cut(s)	848, 1029
TspRI	CASTG	1 cut(s)	661
Van91I	CCANNNNNTGG	2 cut(s)	181, 445
VpaK11BI	GGWCC	3 cut(s)	448, 529, 648
XagI	CCTNNNNNAGG	1 cut(s)	973
XapI	RAATTY	3 cut(s)	207, 377, 795
XceI	RCATGY	2 cut(s)	192, 200
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	479, 521
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.