Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Reverse (-)

21408905 .. 21410865

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCCTCTGCGAAAACTCGTGGCCTCCTGTCGCTCCTCCTCATCCTCCCCCTCATCACCCTCGCTACCGCCACCGCAGGTATCCGCCTTGGCATCATTCTGAAACCCTCCCCGGATGTTGCCATCTTCCGAGAAGCCCCTGCTTTTCGAAATGGGGATGCCTGCCAGCCTGCAGAGAAAATCCACATTGCCATGACACTGGACTCTAACTACCTAAGAGGCACCATGGGCGCGGTGCTTTCGATTTTGCAACATTCAACGTGCCCCGAATTCATTGAGTTCCACTTTCTCTGGGCCAGATTCGAGCCTGAGGTACTCTCCAACATCAAATCCGCCTTCCCATACCTAAAGTTCAATGTCTACCGCTTTGATTCCAATAGGGTTCGTGGAAAAATATCAAAGTCTATACGCCAAGCCTTGGACCAACCCTTAAACTACGCACGCATATACCTAGCTGACATAATCCCAGTTGATGTGAAAAGGGTTCTATACCTAGACTCAGACCTTGTGGTTGTGGATGATGTAGCAAAGTTATGGAAGGTTGACTTGCAAGGCAAGGTACTGGCTGCACCAGAATATTGTCACGCAAACTTTTCCAAATATTTCACAGAATCGTTCTGGTCAGACCAAATGTTTTCCAAGACATTTGAAGGCAGAAAGCCTTGCTATTTTAACACAGGGGTTATGGTGGTGGATGTGGAAAAATGGAGACAAGGAGAGTACACAAAGCAAATGGAGGAGTGGATGGTAGTGCAAAAGCAAAAGAGGATATACCATTTGGGGTCTTTGCCACCTTTTTTGCTGGTTTTGGCTGGGGATATTAGGGCAGTGGATCATAGGTGGAACCAACATGGGCTTGGTGGGGACAATCTTGAAGGCAAGTGTAGGAGTTTGCATCCTGGGCCTATAAGCCTGTTGCATTGGAGTGGGAAAGGGAAGCCCTGGTTGAGGTTAGATTCAAGAAAGCCCTGCACCGTTGATCATCTTTGGGCCCCATATGATCTTTACCGTTCATCAGCTCATTACTTGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

346

Amino Acids

39.45

Weight (kDa)

8.97

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	233
AciI	CCGC	6 cut(s)	69, 75, 85, 233, 333, 364
AclWI	GGATC	1 cut(s)	840
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	3 cut(s)	315, 561, 722
AfiI	CCNNNNNNNGG	2 cut(s)	418, 948
AgsI	TTSAA	5 cut(s)	258, 355, 650, 875, 960
AjnI	CCWGG	2 cut(s)	898, 941
AluBI	AGCT	2 cut(s)	455, 1019
AluI	AGCT	2 cut(s)	455, 1019
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	1 cut(s)	840
AoxI	GGCC	5 cut(s)	3, 22, 294, 902, 990
ApaI	GGGCCC	1 cut(s)	994
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	5 cut(s)	294, 421, 902, 990, 991
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	2 cut(s)	266, 994
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	994
BauI	CACGAG	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	2 cut(s)	131, 739
BciT130I	CCWGG	2 cut(s)	900, 943
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	2 cut(s)	452, 494
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	113, 900, 943
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	5 cut(s)	294, 421, 902, 990, 991
BmiI	GGNNCC	4 cut(s)	223, 845, 992, 993
BmrFI	CCNGG	3 cut(s)	113, 900, 943
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	102, 148, 904
BmuI	ACTGGG	1 cut(s)	461
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu14I	TTCGAA	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	6 cut(s)	88, 111, 225, 417, 899, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 948
Bse1I	ACTGG	3 cut(s)	204, 467, 567
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	900, 943
BseDI	CCNNGG	6 cut(s)	88, 111, 225, 417, 899, 941
BseGI	GGATG	7 cut(s)	42, 121, 163, 523, 700, 750, 895
BseLI	CCNNNNNNNGG	2 cut(s)	418, 948
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	300, 513
BseNI	ACTGG	3 cut(s)	204, 467, 567
BseRI	GAGGAG	3 cut(s)	26, 29, 752
BseSI	GKGCMC	2 cut(s)	266, 994
BseXI	GCAGC	1 cut(s)	553
BseYI	CCCAGC	1 cut(s)	812
BsgI	GTGCAG	2 cut(s)	552, 955
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	5 cut(s)	5, 24, 296, 904, 992
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	2 cut(s)	418, 948
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	5 cut(s)	5, 24, 296, 904, 992
Bsp119I	TTCGAA	1 cut(s)	148
Bsp120I	GGGCCC	1 cut(s)	990
Bsp1286I	GDGCHC	2 cut(s)	266, 994
Bsp143I	GATC	3 cut(s)	832, 979, 1000
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	6 cut(s)	69, 75, 85, 233, 333, 364
BspANI	GGCC	5 cut(s)	5, 24, 296, 904, 992
BspCNI	CTCAG	2 cut(s)	301, 512
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	4 cut(s)	223, 845, 992, 993
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	840
BspT104I	TTCGAA	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	204, 467, 567
BssECI	CCNNGG	6 cut(s)	88, 111, 225, 417, 899, 941
BssMI	GATC	3 cut(s)	832, 979, 1000
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	88, 225, 417
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	900, 943
Bst4CI	ACNGT	2 cut(s)	976, 1010
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	4 cut(s)	163, 167, 171, 442
BstDEI	CTNAG	3 cut(s)	215, 309, 499
BstDSI	CCRYGG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	946
BstF5I	GGATG	7 cut(s)	42, 121, 163, 523, 700, 750, 895
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	835, 982, 1003
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	3 cut(s)	832, 979, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 901
BstNI	CCWGG	2 cut(s)	900, 943
BstSCI	CCNGG	3 cut(s)	111, 898, 941
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	2 cut(s)	266, 994
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	5 cut(s)	5, 24, 296, 904, 992
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	7 cut(s)	42, 121, 163, 523, 700, 750, 895
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	2 cut(s)	197, 834
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	4 cut(s)	163, 167, 171, 442
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	5 cut(s)	294, 421, 902, 990, 991
Csp6I	GTAC	3 cut(s)	314, 560, 721
CspCI	CAANNNNNGTGG	2 cut(s)	780, 815
CviAII	CATG	3 cut(s)	193, 226, 851
CviQI	GTAC	3 cut(s)	314, 560, 721
DdeI	CTNAG	3 cut(s)	215, 309, 499
DpnI	GATC	3 cut(s)	834, 981, 1002
DpnII	GATC	3 cut(s)	832, 979, 1000
EciI	GGCGGA	2 cut(s)	74, 322
Eco130I	CCWWGG	3 cut(s)	88, 225, 417
Eco24I	GRGCYC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	991
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	898, 941
EcoT14I	CCWWGG	3 cut(s)	88, 225, 417
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	3 cut(s)	88, 225, 417
FaeI	CATG	3 cut(s)	196, 229, 854
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	3 cut(s)	192, 225, 850
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	7 cut(s)	29, 128, 170, 530, 707, 757, 882
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	452, 494
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	816
HaeIII	GGCC	5 cut(s)	5, 24, 296, 904, 992
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	196, 229, 854
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	6 cut(s)	203, 300, 371, 497, 611, 956
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	361, 544, 723
Hpy188I	TCNGA	4 cut(s)	102, 131, 502, 625
Hpy188III	TCNNGA	2 cut(s)	872, 960
Hpy8I	GTNNAC	3 cut(s)	361, 544, 723
HpyAV	CCTTC	4 cut(s)	346, 532, 644, 869
HpyCH4III	ACNGT	2 cut(s)	976, 1010
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	8 cut(s)	173, 250, 550, 569, 754, 895, 919, 972
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 901
HpyF3I	CTNAG	3 cut(s)	215, 309, 499
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	196, 229, 854
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	832, 979, 1000
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	3 cut(s)	102, 148, 904
MaeI	CTAG	2 cut(s)	452, 494
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	3 cut(s)	834, 981, 1002
MboI	GATC	3 cut(s)	832, 979, 1000
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	266, 994
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	197, 491
MmeI	TCCRAC	1 cut(s)	345
MseI	TTAA	2 cut(s)	431, 672
MslI	CAYNNNNRTG	2 cut(s)	191, 924
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	113, 900, 943
MvaI	CCWGG	2 cut(s)	900, 943
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	228, 901
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	225
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	832, 979, 1000
NlaIII	CATG	3 cut(s)	196, 229, 854
NlaIV	GGNNCC	4 cut(s)	223, 845, 992, 993
NmuCI	GTSAC	1 cut(s)	581
NspV	TTCGAA	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	300, 371, 611, 956
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	2 cut(s)	197, 491
PpsI	GAGTC	2 cut(s)	197, 491
Psp6I	CCWGG	2 cut(s)	898, 941
PspFI	CCCAGC	1 cut(s)	812
PspGI	CCWGG	2 cut(s)	898, 941
PspN4I	GGNNCC	4 cut(s)	223, 845, 992, 993
PspOMI	GGGCCC	1 cut(s)	990
PspPI	GGNCC	5 cut(s)	294, 421, 902, 990, 991
PstI	CTGCAG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	315, 561, 722
RsaNI	GTAC	3 cut(s)	314, 560, 721
RseI	CAYNNNNRTG	2 cut(s)	191, 924
SaqAI	TTAA	2 cut(s)	431, 672
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	3 cut(s)	832, 979, 1000
Sau96I	GGNCC	5 cut(s)	294, 421, 902, 990, 991
SchI	GAGTC	2 cut(s)	197, 491
ScrFI	CCNGG	3 cut(s)	113, 900, 943
SduI	GDGCHC	2 cut(s)	266, 994
SfaNI	GCATC	3 cut(s)	102, 148, 904
SfcI	CTRYAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	191, 924
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	6 cut(s)	69, 75, 85, 233, 333, 364
SspI	AATATT	2 cut(s)	578, 602
SspMI	CTAG	2 cut(s)	452, 494
StyD4I	CCNGG	3 cut(s)	111, 898, 941
StyI	CCWWGG	3 cut(s)	88, 225, 417
TaaI	ACNGT	2 cut(s)	976, 1010
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	148, 242, 303
TasI	AATT	1 cut(s)	269
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	4 cut(s)	300, 371, 611, 956
Tru1I	TTAA	2 cut(s)	431, 672
Tru9I	TTAA	2 cut(s)	431, 672
TscAI	CASTG	2 cut(s)	204, 834
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	262, 1002
TspRI	CASTG	2 cut(s)	204, 834
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	421
XagI	CCTNNNNNAGG	1 cut(s)	946
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	452, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.