Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Forward (+)

11598575 .. 11599627

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGTCGTGGAGTACTTCAACCCCTCTCCCTATACTCCTCGGCCTCCTGTCCATCCTCCTCCTCCACCCCCTCACCACCACCTTCGGCATTCGCCTGGGCATCATTCACCGTCGCTCCCCTGACCTTCCCGTTTTCCGTGAAGCCCCCTCCTTTAAAAATGGGGAGCAATGTGGCTCCAAGAACGCAGACGGCATCCACGTGGCCATGACCTTGGATGCCAATTACATCCGGGGCACCATGGCTGCTGTCTTCTCCTTGTTGCAACACTCAACATGCCCTGAAAATCTCTACTTCCACTTTCTCTCAGCGCATATTGCACCAGAGTTCTTTTCAAGTATAAAGTCTACATTCCCTTATTTGAACTTCAAGACTTATGCCTTTGATTCAAACCGGGTTCGTGGGAAGATATCAAAGTCTATAAGACAAGCATTGGATCAGCCTATGAATTATGCAAGAATTTATCTAGCTAATATCCTTCCACCCGACATGGGACGAGTTATTTACTTGGATTCAGACCTCGTTGTGGTGGACGACATTGCCAAGCTATGGAGTGTGGACATGGAAGACAAGGTGGTGGCTGCACCAGAATATTGCCAGGCAAATTTCATACAGTATTTCACCAATACGTTTTGGTCTGACCCGGATTTGTCAAAGACGTTTCAGGGAAGAAACCCATGTTATTTCAACACAGGAGTGATGGTGGTGGATGTGGATAAATGGAGGAAAGGAGGGTACACACAGAAAGTTGAGGAGTGGATGGCATTGCAAAAGAGAAAGAGGCTATACAATTTGGGGTCTTTGCCGCCATTTTTGCTGGTTTTGGCTGGAAACATCAAGGCTGTGGATCACAGGTGGAACCAACATGGACTAGGTGGTGACAACTTTGAAGGAAAGTGTAGGAGCCTCCACCCAGGTCCCATTAGTCTTCTGCATTGGAGTGGGAAGGGTAAGCCATGGTTGAGGTTGGACTCCAGGAAGCCATGCACCGTCGATCACCTATGGGCACCGTACGATCTCTACCATTCTTCTAGACACTTTCTGGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

351

Amino Acids

39.87

Weight (kDa)

8.89

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 1006
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	347
AciI	CCGC	1 cut(s)	806
AclWI	GGATC	2 cut(s)	444, 855
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	459, 604
AcvI	CACGTG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	16, 737, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	491, 526, 549
AgsI	TTSAA	7 cut(s)	21, 336, 364, 370, 390, 688, 890
AjnI	CCWGG	4 cut(s)	96, 597, 913, 974
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	2 cut(s)	470, 547
AluI	AGCT	2 cut(s)	470, 547
AlwI	GGATC	2 cut(s)	444, 855
AoxI	GGCC	2 cut(s)	43, 204
ApeKI	GCWGC	2 cut(s)	245, 581
ApoI	RAATTY	2 cut(s)	459, 604
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	917
AsuC2I	CCSGG	3 cut(s)	233, 395, 644
AsuHPI	GGTGA	5 cut(s)	67, 101, 613, 890, 989
AvaII	GGWCC	1 cut(s)	917
BaeGI	GKGCMC	2 cut(s)	239, 1009
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	236, 1006
BbrPI	CACGTG	1 cut(s)	202
BbsI	GAAGAC	3 cut(s)	244, 573, 920
BbvI	GCAGC	2 cut(s)	232, 568
BccI	CCATC	3 cut(s)	62, 694, 754
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	4 cut(s)	98, 599, 915, 976
BcnI	CCSGG	3 cut(s)	233, 395, 644
BfaI	CTAG	3 cut(s)	467, 872, 1032
BisI	GCNGC	3 cut(s)	246, 582, 806
BlsI	GCNGC	3 cut(s)	247, 583, 807
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	7 cut(s)	98, 233, 395, 599, 644, 915, 976
Bme18I	GGWCC	1 cut(s)	917
BmgT120I	GGNCC	1 cut(s)	917
BmiI	GGNNCC	6 cut(s)	178, 238, 860, 905, 919, 1008
BmrFI	CCNGG	7 cut(s)	98, 233, 395, 599, 644, 915, 976
BmsI	GCATC	3 cut(s)	111, 204, 208
BpiI	GAAGAC	3 cut(s)	244, 573, 920
BpmI	CTGGAG	1 cut(s)	958
BpuMI	CCSGG	3 cut(s)	233, 395, 644
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	7 cut(s)	40, 97, 213, 232, 240, 913, 956
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	491, 526, 549
Bse3DI	GCAATG	3 cut(s)	176, 537, 764
BseBI	CCWGG	4 cut(s)	98, 599, 915, 976
BseDI	CCNNGG	7 cut(s)	40, 97, 213, 232, 240, 913, 956
BseGI	GGATG	6 cut(s)	54, 195, 223, 228, 715, 765
BseLI	CCNNNNNNNGG	3 cut(s)	491, 526, 549
BseMI	GCAATG	3 cut(s)	176, 537, 764
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	4 cut(s)	29, 50, 53, 767
BseSI	GKGCMC	2 cut(s)	239, 1009
BseXI	GCAGC	2 cut(s)	232, 568
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	45, 206
BshNI	GGYRCC	2 cut(s)	236, 1006
BsiSI	CCGG	3 cut(s)	232, 394, 644
BsiWI	CGTACG	1 cut(s)	1011
BslFI	GGGAC	2 cut(s)	507, 903
BslI	CCNNNNNNNGG	3 cut(s)	491, 526, 549
BsmFI	GGGAC	2 cut(s)	507, 903
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	45, 206
Bsp1286I	GDGCHC	2 cut(s)	239, 1009
Bsp143I	GATC	4 cut(s)	436, 847, 994, 1015
Bsp19I	CCATGG	2 cut(s)	240, 956
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	2 cut(s)	45, 206
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	6 cut(s)	178, 238, 860, 905, 919, 1008
BspPI	GGATC	2 cut(s)	444, 855
BspT107I	GGYRCC	2 cut(s)	236, 1006
BsrDI	GCAATG	3 cut(s)	176, 537, 764
BssECI	CCNNGG	7 cut(s)	40, 97, 213, 232, 240, 913, 956
BssMI	GATC	4 cut(s)	436, 847, 994, 1015
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	213, 240, 956
Bst2UI	CCWGG	4 cut(s)	98, 599, 915, 976
Bst4CI	ACNGT	4 cut(s)	113, 615, 991, 1011
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	307
BstDSI	CCRYGG	2 cut(s)	240, 956
BstF5I	GGATG	6 cut(s)	54, 195, 223, 228, 715, 765
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	439, 850, 997, 1018
BstMBI	GATC	4 cut(s)	436, 847, 994, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 814
BstNI	CCWGG	4 cut(s)	98, 599, 915, 976
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	7 cut(s)	96, 231, 393, 597, 642, 913, 974
BstSLI	GKGCMC	2 cut(s)	239, 1009
BstV1I	GCAGC	2 cut(s)	232, 568
BstV2I	GAAGAC	3 cut(s)	244, 573, 920
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	45, 206
BtgI	CCRYGG	2 cut(s)	240, 956
BtsCI	GGATG	6 cut(s)	54, 195, 223, 228, 715, 765
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	917
Csp6I	GTAC	3 cut(s)	15, 736, 1012
CviAII	CATG	9 cut(s)	208, 241, 276, 490, 562, 678, 866, 957, 984
CviQI	GTAC	3 cut(s)	15, 736, 1012
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	4 cut(s)	438, 849, 996, 1017
DpnII	GATC	4 cut(s)	436, 847, 994, 1015
DraI	TTTAAA	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	204
Eco130I	CCWWGG	3 cut(s)	213, 240, 956
Eco32I	GATATC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	917
Eco72I	CACGTG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	917
EcoRII	CCWGG	4 cut(s)	96, 597, 913, 974
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	3 cut(s)	213, 240, 956
ErhI	CCWWGG	3 cut(s)	213, 240, 956
FaeI	CATG	9 cut(s)	211, 244, 279, 493, 565, 681, 869, 960, 987
FaqI	GGGAC	2 cut(s)	507, 903
FatI	CATG	9 cut(s)	207, 240, 275, 489, 561, 677, 865, 956, 983
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	3 cut(s)	246, 582, 806
FokI	GGATG	6 cut(s)	41, 182, 215, 230, 722, 772
Fsp4HI	GCNGC	3 cut(s)	246, 582, 806
FspBI	CTAG	3 cut(s)	467, 872, 1032
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	3 cut(s)	246, 582, 806
GsuI	CTGGAG	1 cut(s)	958
HaeIII	GGCC	2 cut(s)	45, 206
HapII	CCGG	3 cut(s)	232, 394, 644
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	9 cut(s)	211, 244, 279, 493, 565, 681, 869, 960, 987
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	3 cut(s)	386, 512, 971
HpaII	CCGG	3 cut(s)	232, 394, 644
HphI	GGTGA	5 cut(s)	67, 101, 613, 890, 989
Hpy166II	GTNNAC	4 cut(s)	348, 532, 559, 738
Hpy188I	TCNGA	2 cut(s)	517, 640
Hpy188III	TCNNGA	3 cut(s)	370, 1032, 1043
Hpy8I	GTNNAC	4 cut(s)	348, 532, 559, 738
Hpy99I	CGWCG	3 cut(s)	10, 117, 995
HpyAV	CCTTC	5 cut(s)	94, 137, 488, 884, 940
HpyCH4III	ACNGT	4 cut(s)	113, 615, 991, 1011
HpyCH4IV	ACGT	3 cut(s)	201, 629, 659
HpyCH4V	TGCA	7 cut(s)	265, 320, 455, 584, 769, 934, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 814
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	3 cut(s)	201, 629, 659
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	211, 244, 279, 493, 565, 681, 869, 960, 987
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	4 cut(s)	436, 847, 994, 1015
LmnI	GCTCC	4 cut(s)	122, 166, 182, 903
Lsp1109I	GCAGC	2 cut(s)	232, 568
LweI	GCATC	3 cut(s)	111, 204, 208
MaeI	CTAG	3 cut(s)	467, 872, 1032
MaeII	ACGT	3 cut(s)	201, 629, 659
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	4 cut(s)	438, 849, 996, 1017
MboI	GATC	4 cut(s)	436, 847, 994, 1015
MboII	GAAGA	6 cut(s)	244, 418, 578, 681, 920, 1020
MhlI	GDGCHC	2 cut(s)	239, 1009
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	5 cut(s)	223, 448, 459, 604, 790
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	965
MmeI	TCCRAC	1 cut(s)	948
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	200, 695, 939
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	3 cut(s)	232, 394, 644
MspR9I	CCNGG	7 cut(s)	98, 233, 395, 599, 644, 915, 976
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	4 cut(s)	98, 599, 915, 976
MwoI	GCNNNNNNNGC	2 cut(s)	317, 814
NciI	CCSGG	3 cut(s)	233, 395, 644
NcoI	CCATGG	2 cut(s)	240, 956
NdeII	GATC	4 cut(s)	436, 847, 994, 1015
NlaIII	CATG	9 cut(s)	211, 244, 279, 493, 565, 681, 869, 960, 987
NlaIV	GGNNCC	6 cut(s)	178, 238, 860, 905, 919, 1008
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	878
NspI	RCATGY	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	386, 512
Pfl23II	CGTACG	1 cut(s)	1011
PflMI	CCANNNNNTGG	1 cut(s)	549
PfoI	TCCNGGA	1 cut(s)	974
PkrI	GCNGC	3 cut(s)	247, 583, 807
PleI	GAGTC	1 cut(s)	965
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	965
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	4 cut(s)	96, 597, 913, 974
PspCI	CACGTG	1 cut(s)	202
PspGI	CCWGG	4 cut(s)	96, 597, 913, 974
PspLI	CGTACG	1 cut(s)	1011
PspN4I	GGNNCC	6 cut(s)	178, 238, 860, 905, 919, 1008
PspPI	GGNCC	1 cut(s)	917
PspPPI	RGGWCCY	1 cut(s)	917
RsaI	GTAC	3 cut(s)	16, 737, 1013
RsaNI	GTAC	3 cut(s)	15, 736, 1012
RseI	CAYNNNNRTG	3 cut(s)	200, 695, 939
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	246, 582, 806
Sau3AI	GATC	4 cut(s)	436, 847, 994, 1015
Sau96I	GGNCC	1 cut(s)	917
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	965
ScrFI	CCNGG	7 cut(s)	98, 233, 395, 599, 644, 915, 976
SduI	GDGCHC	2 cut(s)	239, 1009
SfaNI	GCATC	3 cut(s)	111, 204, 208
SinI	GGWCC	1 cut(s)	917
SmiMI	CAYNNNNRTG	3 cut(s)	200, 695, 939
Sse9I	AATT	5 cut(s)	223, 448, 459, 604, 790
SsiI	CCGC	1 cut(s)	806
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	3 cut(s)	467, 872, 1032
StyD4I	CCNGG	7 cut(s)	96, 231, 393, 597, 642, 913, 974
StyI	CCWWGG	3 cut(s)	213, 240, 956
TaaI	ACNGT	4 cut(s)	113, 615, 991, 1011
TaiI	ACGT	3 cut(s)	204, 632, 662
TaqI	TCGA	1 cut(s)	993
TasI	AATT	5 cut(s)	223, 448, 459, 604, 790
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	386, 512
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	2 cut(s)	245, 581
Tsp45I	GTSAC	1 cut(s)	878
TspDTI	ATGAA	2 cut(s)	461, 598
TspGWI	ACGGA	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	917
XapI	RAATTY	2 cut(s)	459, 604
XbaI	TCTAGA	1 cut(s)	1031
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	3 cut(s)	467, 872, 1032
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.