Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Forward (+)

21325796 .. 21326839

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCTTGTGGGGAGCTTTATCTCCTCACCTTCTACTCCTCGGCCTCCTGTGCATCCTCCTCTACCCCAACGTTGGCATTCGCCTCGGCTCTGTCCGTCGCCCCTCCCCGGACATCCCCGTTTTTTGGGAAGCCCCGGCCTTTCGGAACGGTGACCAATGCAGCTCGGGAAATAACACAGACGATATCCATGTGGCCATGACCCTCGACGCCAATTACATCCGGGGCACGATGGCTGCTGTCTTCTCTTTGTTGCAACATTCTACCTGCCCTGAAAACCTCAAGTTCCACTTTCTATCTGCCCATGTTGCGTCGGAGCTATTTTCGAGAATCAACTCCACGTTTCCTTACTTGGATTTCAAGACTTACCCCTTTGATTCAAACAGAGTTCGTGGGAAGATATCAAGGTCCATAAGACGAGCATTGGATCAACCTATAAATTATGCGAGAATTTACCTCGCTGATCTTCTTCCAAGTGATATTAAACGTGTTATTTACTTGGATTCGGACCTCGTTGTGGTCGACGACATTGCGGAGCTGTGGGGGGTGGACATGGAAGACAAGGTGGTGGCTGCCCCAGAATATTGTCAAGCAAATTTCACAAAATACTTCACAGATGCATTATGGTCCGACCCGGATTTGTCAACGACGTTCCGAGGAAGAAACCCATGTTATTTCAACACAGGAGTGATGGTGGTGGATGTGGATAAATGGAGAAAAGGAGGGTATACACAGAAAGTAGAGGAGTGGATGGCCCTGCAAAAGAGAAAGAGGCTATACCATTTGGGGTCTTTGCCGCCATTTTTGCTGGTTTTGGCTGGGAACATCAAGGCTGTGGATCACAGGTGGAACCAACATGGGCTTGGTGGTGACAACTTTGAAGGAAAGTGTAGGCGCCTCCACCCAGGTCCCATTAGTCTTCTTCATTGGAGCGGAAAGGGTAAGCCATGGTTGCGGTTGGATTCTAGAAGAACATGTACTGTTGATCATCTTTGGGCGCCATACGATCTCTACCAGTCTTCGAGAAGCTTTCTGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

348

Amino Acids

39.61

Weight (kDa)

8.39

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	64 - 319	5.4e-59	Glycosyl transferase family 8
Glyco_transf_24	PF18404	80 - 242	1.6e-09	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	894, 997
AccBSI	CCGCTC	1 cut(s)	933
AccI	GTMKAC	2 cut(s)	522, 728
AciI	CCGC	4 cut(s)	533, 797, 933, 955
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	435, 846
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	450, 595
AcyI	GRCGYC	3 cut(s)	210, 895, 998
AfaI	GTAC	1 cut(s)	979
AfiI	CCNNNNNNNGG	4 cut(s)	74, 109, 126, 517
AflIII	ACRYGT	2 cut(s)	487, 974
AgsI	TTSAA	4 cut(s)	361, 381, 679, 881
AjnI	CCWGG	1 cut(s)	904
AleI	CACNNNNGTG	1 cut(s)	686
AluBI	AGCT	5 cut(s)	17, 165, 319, 538, 1029
AluI	AGCT	5 cut(s)	17, 165, 319, 538, 1029
AlwI	GGATC	2 cut(s)	435, 846
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	5 cut(s)	3, 43, 138, 195, 753
ApeKI	GCWGC	3 cut(s)	162, 236, 572
ApoI	RAATTY	2 cut(s)	450, 595
AspLEI	GCGC	2 cut(s)	897, 1000
AspS9I	GGNCC	5 cut(s)	408, 508, 627, 754, 908
AsuC2I	CCSGG	4 cut(s)	110, 137, 224, 635
AsuHPI	GGTGA	3 cut(s)	20, 164, 881
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	4 cut(s)	408, 508, 627, 908
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	197
BanI	GGYRCC	2 cut(s)	894, 997
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BbsI	GAAGAC	4 cut(s)	235, 564, 911, 1011
BbvI	GCAGC	3 cut(s)	174, 223, 559
BccI	CCATC	3 cut(s)	226, 685, 745
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 512, 546
BciT130I	CCWGG	1 cut(s)	906
BclI	TGATCA	1 cut(s)	985
BcnI	CCSGG	4 cut(s)	110, 137, 224, 635
BfaI	CTAG	1 cut(s)	966
BfoI	RGCGCY	2 cut(s)	898, 1001
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	163, 237, 573, 797
BlsI	GCNGC	4 cut(s)	164, 238, 574, 798
Bme1390I	CCNGG	5 cut(s)	110, 137, 224, 635, 906
Bme18I	GGWCC	4 cut(s)	408, 508, 627, 908
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	5 cut(s)	408, 508, 627, 754, 908
BmiI	GGNNCC	4 cut(s)	851, 896, 910, 999
BmrFI	CCNGG	5 cut(s)	110, 137, 224, 635, 906
BmsI	GCATC	2 cut(s)	63, 607
BpiI	GAAGAC	4 cut(s)	235, 564, 911, 1011
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	4 cut(s)	110, 137, 224, 635
BsaHI	GRCGYC	3 cut(s)	210, 895, 998
BsaJI	CCNNGG	8 cut(s)	40, 85, 108, 135, 223, 655, 904, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 109, 126, 517
Bse1I	ACTGG	1 cut(s)	1015
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	8 cut(s)	40, 85, 108, 135, 223, 655, 904, 947
BseGI	GGATG	5 cut(s)	54, 114, 219, 706, 756
BseLI	CCNNNNNNNGG	4 cut(s)	74, 109, 126, 517
BseMI	GCAATG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	1015
BseRI	GAGGAG	4 cut(s)	15, 29, 50, 758
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	174, 223, 559
BseYI	CCCAGC	1 cut(s)	818
BshFI	GGCC	5 cut(s)	5, 45, 140, 197, 755
BshNI	GGYRCC	2 cut(s)	894, 997
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	110, 137, 223, 635
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	4 cut(s)	74, 109, 126, 517
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	5 cut(s)	5, 45, 140, 197, 755
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	5 cut(s)	427, 463, 838, 985, 1006
Bsp19I	CCATGG	1 cut(s)	947
BspACI	CCGC	4 cut(s)	533, 797, 933, 955
BspANI	GGCC	5 cut(s)	5, 45, 140, 197, 755
BspLI	GGNNCC	4 cut(s)	851, 896, 910, 999
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	435, 846
BspT107I	GGYRCC	2 cut(s)	894, 997
BsrBI	CCGCTC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	1015
BssECI	CCNNGG	8 cut(s)	40, 85, 108, 135, 223, 655, 904, 947
BssMI	GATC	5 cut(s)	427, 463, 838, 985, 1006
BssNAI	GTATAC	1 cut(s)	729
BssNI	GRCGYC	3 cut(s)	210, 895, 998
BssT1I	CCWWGG	1 cut(s)	947
Bst1107I	GTATAC	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	2 cut(s)	152, 982
BstACI	GRCGYC	3 cut(s)	210, 895, 998
BstDSI	CCRYGG	1 cut(s)	947
BstEII	GGTNACC	1 cut(s)	152
BstF5I	GGATG	5 cut(s)	54, 114, 219, 706, 756
BstH2I	RGCGCY	2 cut(s)	898, 1001
BstHHI	GCGC	2 cut(s)	897, 1000
BstKTI	GATC	5 cut(s)	430, 466, 841, 988, 1009
BstMBI	GATC	5 cut(s)	427, 463, 838, 985, 1006
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 308, 805, 952
BstNI	CCWGG	1 cut(s)	906
BstNSI	RCATGY	1 cut(s)	978
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	5 cut(s)	108, 135, 222, 633, 904
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	174, 223, 559
BstV2I	GAAGAC	4 cut(s)	235, 564, 911, 1011
BstZ17I	GTATAC	1 cut(s)	729
BsuRI	GGCC	5 cut(s)	5, 45, 140, 197, 755
BtgI	CCRYGG	1 cut(s)	947
BtsCI	GGATG	5 cut(s)	54, 114, 219, 706, 756
BveI	ACCTGC	1 cut(s)	275
CfoI	GCGC	2 cut(s)	897, 1000
Cfr13I	GGNCC	5 cut(s)	408, 508, 627, 754, 908
CseI	GACGC	2 cut(s)	218, 300
Csp6I	GTAC	1 cut(s)	978
CviAII	CATG	8 cut(s)	191, 199, 305, 553, 669, 857, 948, 975
CviQI	GTAC	1 cut(s)	978
DinI	GGCGCC	2 cut(s)	896, 999
DpnI	GATC	5 cut(s)	429, 465, 840, 987, 1008
DpnII	GATC	5 cut(s)	427, 463, 838, 985, 1006
EaeI	YGGCCR	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	947
Eco32I	GATATC	2 cut(s)	187, 402
Eco47I	GGWCC	4 cut(s)	408, 508, 627, 908
Eco88I	CYCGRG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	908
EcoO65I	GGTNACC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	904
EcoRV	GATATC	2 cut(s)	187, 402
EcoT14I	CCWWGG	1 cut(s)	947
EcoT22I	ATGCAT	1 cut(s)	622
EgeI	GGCGCC	2 cut(s)	896, 999
EheI	GGCGCC	2 cut(s)	896, 999
ErhI	CCWWGG	1 cut(s)	947
FaeI	CATG	8 cut(s)	194, 202, 308, 556, 672, 860, 951, 978
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	8 cut(s)	190, 198, 304, 552, 668, 856, 947, 974
FbaI	TGATCA	1 cut(s)	985
FblI	GTMKAC	2 cut(s)	522, 728
Fnu4HI	GCNGC	4 cut(s)	163, 237, 573, 797
FokI	GGATG	5 cut(s)	41, 101, 206, 713, 763
Fsp4HI	GCNGC	4 cut(s)	163, 237, 573, 797
FspBI	CTAG	1 cut(s)	966
GlaI	GCGC	2 cut(s)	896, 999
GluI	GCNGC	4 cut(s)	163, 237, 573, 797
GsaI	CCCAGC	1 cut(s)	822
HaeII	RGCGCY	2 cut(s)	898, 1001
HaeIII	GGCC	5 cut(s)	5, 45, 140, 197, 755
HapII	CCGG	4 cut(s)	110, 137, 223, 635
HgaI	GACGC	2 cut(s)	218, 300
HhaI	GCGC	2 cut(s)	897, 1000
Hin1I	GRCGYC	3 cut(s)	210, 895, 998
Hin1II	CATG	8 cut(s)	194, 202, 308, 556, 672, 860, 951, 978
Hin6I	GCGC	2 cut(s)	895, 998
HinP1I	GCGC	2 cut(s)	895, 998
HincII	GTYRAC	2 cut(s)	523, 645
HindII	GTYRAC	2 cut(s)	523, 645
HindIII	AAGCTT	1 cut(s)	1027
HinfI	GANTC	4 cut(s)	330, 377, 503, 962
HpaII	CCGG	4 cut(s)	110, 137, 223, 635
HphI	GGTGA	3 cut(s)	20, 164, 881
Hpy166II	GTNNAC	4 cut(s)	523, 550, 645, 729
Hpy188I	TCNGA	5 cut(s)	147, 316, 508, 631, 656
Hpy188III	TCNNGA	6 cut(s)	168, 327, 361, 966, 1023, 1034
Hpy8I	GTNNAC	4 cut(s)	523, 550, 645, 729
Hpy99I	CGWCG	5 cut(s)	102, 212, 316, 527, 652
HpyAV	CCTTC	2 cut(s)	41, 875
HpyCH4III	ACNGT	2 cut(s)	152, 982
HpyCH4IV	ACGT	4 cut(s)	72, 341, 487, 650
HpyCH4V	TGCA	5 cut(s)	54, 162, 256, 620, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 308, 805, 952
HpySE526I	ACGT	4 cut(s)	72, 341, 487, 650
Hsp92I	GRCGYC	3 cut(s)	210, 895, 998
Hsp92II	CATG	8 cut(s)	194, 202, 308, 556, 672, 860, 951, 978
HspAI	GCGC	2 cut(s)	895, 998
KasI	GGCGCC	2 cut(s)	894, 997
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	5 cut(s)	427, 463, 838, 985, 1006
LmnI	GCTCC	4 cut(s)	14, 316, 535, 930
Lsp1109I	GCAGC	3 cut(s)	174, 223, 559
LweI	GCATC	2 cut(s)	63, 607
MaeI	CTAG	1 cut(s)	966
MaeII	ACGT	4 cut(s)	72, 341, 487, 650
MaeIII	GTNAC	2 cut(s)	152, 869
MalI	GATC	5 cut(s)	429, 465, 840, 987, 1008
MbiI	CCGCTC	1 cut(s)	933
MboI	GATC	5 cut(s)	427, 463, 838, 985, 1006
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	214, 439, 450, 595
MluNI	TGGCCA	1 cut(s)	197
Mly113I	GGCGCC	2 cut(s)	895, 998
MmeI	TCCRAC	3 cut(s)	294, 654, 939
Mox20I	TGGCCA	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	4 cut(s)	110, 137, 223, 635
MspR9I	CCNGG	5 cut(s)	110, 137, 224, 635, 906
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	4 cut(s)	51, 308, 805, 952
NarI	GGCGCC	2 cut(s)	895, 998
NciI	CCSGG	4 cut(s)	110, 137, 224, 635
NcoI	CCATGG	1 cut(s)	947
NdeII	GATC	5 cut(s)	427, 463, 838, 985, 1006
NlaIII	CATG	8 cut(s)	194, 202, 308, 556, 672, 860, 951, 978
NlaIV	GGNNCC	4 cut(s)	851, 896, 910, 999
NmeAIII	GCCGAG	2 cut(s)	21, 66
NmuCI	GTSAC	2 cut(s)	152, 869
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	978
OliI	CACNNNNGTG	1 cut(s)	686
PciI	ACATGT	1 cut(s)	974
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	330, 377, 503, 962
PkrI	GCNGC	4 cut(s)	164, 238, 574, 798
PluTI	GGCGCC	2 cut(s)	898, 1001
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	974
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	904
PspEI	GGTNACC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	4 cut(s)	851, 896, 910, 999
PspPI	GGNCC	5 cut(s)	408, 508, 627, 754, 908
PspPPI	RGGWCCY	1 cut(s)	908
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
RseI	CAYNNNNRTG	1 cut(s)	686
SalI	GTCGAC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	163, 237, 573, 797
Sau3AI	GATC	5 cut(s)	427, 463, 838, 985, 1006
Sau96I	GGNCC	5 cut(s)	408, 508, 627, 754, 908
ScrFI	CCNGG	5 cut(s)	110, 137, 224, 635, 906
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	2 cut(s)	63, 607
SfoI	GGCGCC	2 cut(s)	896, 999
SinI	GGWCC	4 cut(s)	408, 508, 627, 908
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	214, 439, 450, 595
SsiI	CCGC	4 cut(s)	533, 797, 933, 955
SspDI	GGCGCC	2 cut(s)	894, 997
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	966
StyD4I	CCNGG	5 cut(s)	108, 135, 222, 633, 904
StyI	CCWWGG	1 cut(s)	947
TaaI	ACNGT	2 cut(s)	152, 982
TaiI	ACGT	4 cut(s)	75, 344, 490, 653
TaqI	TCGA	4 cut(s)	207, 326, 522, 1022
TasI	AATT	4 cut(s)	214, 439, 450, 595
TatI	WGTACW	1 cut(s)	977
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	4 cut(s)	330, 377, 503, 962
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	152, 869
TseI	GCWGC	3 cut(s)	162, 236, 572
Tsp45I	GTSAC	2 cut(s)	152, 869
TspDTI	ATGAA	1 cut(s)	914
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	4 cut(s)	408, 508, 627, 908
XapI	RAATTY	2 cut(s)	450, 595
XbaI	TCTAGA	1 cut(s)	965
XceI	RCATGY	1 cut(s)	978
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XmiI	GTMKAC	2 cut(s)	522, 728
XspI	CTAG	1 cut(s)	966
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.