Rh6BG343000

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
57508399 .. 57511007
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG343000.1

Sequence Viewer

Length: 1065 bp
ATGGCCTCCTCCCCGACAACCCGCCACCGTCTGGGCCTCCTGTCTTCCCCCTTCCTCCTCTTCTTCGTCCTCTTCCACTACCACGTCCCAGCCGCGAAAGGCATACGCCTGGCCGGCATCATCCGGAAGCCCTCTCCGGATGTTGCCAACATATTCCGAGAGGCCCCGGCCTTTAGGAATGGCGACTCCTGCAGCGGCGAGGAGAGGATCCACATTGCCATGACGTTGGACTCTAACTACTTGCGGGGCACGATGGCCGCCGTGCTTTCCATCCTCCAGCACTCCACATGCCCGGAGATGGTCGAGTTCCACTTCCTGTGGGCTCGGTTCGAGCCCGACGTACTCTCCAACATCAATGCCACCTTCCCCTATCTCAAATTCAACGTTTATCGATTCGATTCCAACAAGGTACGTGGCAAGATATCAAAGTCCGTACGCCAAGCCCTAGACCAGCCCTTGAACTACGCGAGAATATACCTTGCTGACATCATCCCATCGGACGTGAAGAGGGTTTTGTACCTGGACTCGGACCTCGTGGTGGTCGATGACGTGGCGAAGCTATGGAAGGTTGAGTTGCAAGGCAAGGTATTGGCTGCACCGGAGTACTGTCACGCGAATTTCACACAATACTTTACCGACGTGTTTTGGTCCGACCGGGAACTTTCGAAAACGTTTGGGGGCCGAAATCCTTGCTATTTCAATACAGGGGTGATGGTGGTGGATGTGGACAGGTGGAGACAAGGTGGCTACACTAAGAAAATGGAGGAGTGGATGACGGTGCAGAAGCAGAAGAGGATTTACCACTTGGGGTCTCTGCCGCCGTTTTTGTTGGTTTTGGCGGGAGATATTAGGGCTGTGGATCACAGGTGGAACCAACACGGGCTCGGCGGCGACAATCTTGAAGGAAAATGTAGGAGTTTGCATCCTGGTCCTATTAGCTTGCTTCATTGGAGTGGGAAGGGAAAACCCTGGTTGAGGTTAGATTCGAGAAAGCCTTGCACCGTGGATCATCTCTGGGCTCCGTACGATCTCTACCGTTCGTCTGCGCATTATTTCGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

40.61

Weight (kDa)

9.09

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 71 - 326 1.1e-58 Glycosyl transferase family 8
Glyco_transf_24 PF18404 88 - 250 7.2e-09 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1047
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 3 cut(s) 95, 467, 614
AccIII TCCGGA 2 cut(s) 123, 136
AciI CCGC 8 cut(s) 22, 93, 195, 244, 258, 818, 839, 888
AclI AACGTT 2 cut(s) 384, 671
AclWI GGATC 4 cut(s) 202, 215, 867, 1014
AcoI YGGCCR 2 cut(s) 111, 255
AcsI RAATTY 2 cut(s) 377, 616
AfaI GTAC 6 cut(s) 342, 411, 435, 518, 605, 1025
AfiI CCNNNNNNNGG 5 cut(s) 31, 298, 526, 538, 975
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 4 cut(s) 382, 460, 700, 902
AjiI CACGTC 4 cut(s) 85, 502, 550, 640
AjnI CCWGG 4 cut(s) 108, 519, 925, 968
AluBI AGCT 2 cut(s) 559, 939
AluI AGCT 2 cut(s) 559, 939
Alw26I GTCTC 2 cut(s) 730, 816
AlwI GGATC 4 cut(s) 202, 215, 867, 1014
Aor13HI TCCGGA 2 cut(s) 123, 136
AoxI GGCC 7 cut(s) 3, 34, 111, 162, 168, 255, 679
ApeKI GCWGC 2 cut(s) 192, 593
ApoI RAATTY 2 cut(s) 377, 616
AspLEI GCGC 1 cut(s) 1048
AspS9I GGNCC 6 cut(s) 34, 163, 529, 648, 679, 929
AsuC2I CCSGG 3 cut(s) 167, 293, 656
AsuHPI GGTGA 1 cut(s) 721
AsuII TTCGAA 2 cut(s) 665, 1056
AvaII GGWCC 3 cut(s) 529, 648, 929
BaeGI GKGCMC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 207
BanII GRGCYC 4 cut(s) 325, 336, 885, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BauI CACGAG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 204, 580
BccI CCATC 5 cut(s) 247, 278, 292, 502, 706
BceAI ACGGC 2 cut(s) 245, 805
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BciT130I CCWGG 4 cut(s) 110, 521, 927, 970
BcnI CCSGG 3 cut(s) 167, 293, 656
BcoDI GTCTC 2 cut(s) 730, 816
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 190
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 7 cut(s) 93, 193, 196, 258, 594, 818, 889
BlsI GCNGC 7 cut(s) 94, 194, 197, 259, 595, 819, 890
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 7 cut(s) 110, 167, 293, 521, 656, 927, 970
Bme18I GGWCC 3 cut(s) 529, 648, 929
BmgBI CACGTC 4 cut(s) 85, 502, 550, 640
BmgT120I GGNCC 6 cut(s) 34, 163, 529, 648, 679, 929
BmiI GGNNCC 5 cut(s) 165, 209, 680, 872, 1020
BmrFI CCNGG 7 cut(s) 110, 167, 293, 521, 656, 927, 970
BmsI GCATC 2 cut(s) 126, 931
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 260
Bpu14I TTCGAA 2 cut(s) 665, 1056
BpuMI CCSGG 3 cut(s) 167, 293, 656
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 816
BsaJI CCNNGG 3 cut(s) 165, 968, 1002
BsaWI WCCGGW 3 cut(s) 123, 136, 598
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 727, 757
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 298, 526, 538, 975
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 213
BseAI TCCGGA 2 cut(s) 123, 136
BseBI CCWGG 4 cut(s) 110, 521, 927, 970
BseCI ATCGAT 1 cut(s) 391
BseDI CCNNGG 3 cut(s) 165, 968, 1002
BseGI GGATG 7 cut(s) 120, 145, 270, 489, 727, 777, 922
BseLI CCNNNNNNNGG 5 cut(s) 31, 298, 526, 538, 975
BseMI GCAATG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 47, 215, 779
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 2 cut(s) 204, 580
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 2 cut(s) 579, 800
Bsh1236I CGCG 3 cut(s) 95, 467, 614
Bsh1285I CGRYCG 1 cut(s) 655
BshFI GGCC 7 cut(s) 5, 36, 113, 164, 170, 257, 681
BshVI ATCGAT 1 cut(s) 391
BsiEI CGRYCG 1 cut(s) 655
BsiSI CCGG 7 cut(s) 114, 124, 137, 167, 293, 599, 655
BsiWI CGTACG 2 cut(s) 433, 1023
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 5 cut(s) 31, 298, 526, 538, 975
BsmAI GTCTC 2 cut(s) 730, 816
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 7 cut(s) 5, 36, 113, 164, 170, 257, 681
Bso31I GGTCTC 1 cut(s) 816
Bsp119I TTCGAA 2 cut(s) 665, 1056
Bsp1286I GDGCHC 5 cut(s) 251, 325, 336, 885, 1021
Bsp13I TCCGGA 2 cut(s) 123, 136
Bsp143I GATC 4 cut(s) 207, 859, 1006, 1027
BspACI CCGC 8 cut(s) 22, 93, 195, 244, 258, 818, 839, 888
BspANI GGCC 7 cut(s) 5, 36, 113, 164, 170, 257, 681
BspDI ATCGAT 1 cut(s) 391
BspEI TCCGGA 2 cut(s) 123, 136
BspFNI CGCG 3 cut(s) 95, 467, 614
BspLI GGNNCC 5 cut(s) 165, 209, 680, 872, 1020
BspMAI CTGCAG 1 cut(s) 194
BspPI GGATC 4 cut(s) 202, 215, 867, 1014
BspT104I TTCGAA 2 cut(s) 665, 1056
BspTNI GGTCTC 1 cut(s) 816
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 165, 968, 1002
BssMI GATC 4 cut(s) 207, 859, 1006, 1027
BssSI CACGAG 1 cut(s) 533
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 4 cut(s) 110, 521, 927, 970
Bst4CI ACNGT 5 cut(s) 29, 608, 778, 1003, 1037
Bst6I CTCTTC 4 cut(s) 65, 77, 500, 785
BstBAI YACGTR 1 cut(s) 413
BstBI TTCGAA 2 cut(s) 665, 1056
BstC8I GCNNGC 2 cut(s) 115, 941
BstDEI CTNAG 1 cut(s) 753
BstDSI CCRYGG 1 cut(s) 1002
BstENI CCTNNNNNAGG 1 cut(s) 973
BstF5I GGATG 7 cut(s) 120, 145, 270, 489, 727, 777, 922
BstFNI CGCG 3 cut(s) 95, 467, 614
BstHHI GCGC 1 cut(s) 1048
BstKTI GATC 4 cut(s) 210, 862, 1009, 1030
BstMAI GTCTC 2 cut(s) 730, 816
BstMBI GATC 4 cut(s) 207, 859, 1006, 1027
BstMCI CGRYCG 1 cut(s) 655
BstMWI GCNNNNNNNGC 2 cut(s) 114, 189
BstNI CCWGG 4 cut(s) 110, 521, 927, 970
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 7 cut(s) 108, 165, 291, 519, 654, 925, 968
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 3 cut(s) 95, 467, 614
BstV1I GCAGC 2 cut(s) 204, 580
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 391
BsuRI GGCC 7 cut(s) 5, 36, 113, 164, 170, 257, 681
BsuTUI ATCGAT 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 1002
BtrI CACGTC 4 cut(s) 85, 502, 550, 640
BtsCI GGATG 7 cut(s) 120, 145, 270, 489, 727, 777, 922
Cac8I GCNNGC 2 cut(s) 115, 941
CfoI GCGC 1 cut(s) 1048
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 6 cut(s) 34, 163, 529, 648, 679, 929
ClaI ATCGAT 1 cut(s) 391
Csp6I GTAC 6 cut(s) 341, 410, 434, 517, 604, 1024
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 220, 288
CviQI GTAC 6 cut(s) 341, 410, 434, 517, 604, 1024
DdeI CTNAG 1 cut(s) 753
DpnI GATC 4 cut(s) 209, 861, 1008, 1029
DpnII GATC 4 cut(s) 207, 859, 1006, 1027
EaeI YGGCCR 2 cut(s) 111, 255
Eam1104I CTCTTC 4 cut(s) 65, 77, 500, 785
EarI CTCTTC 4 cut(s) 65, 77, 500, 785
Eco24I GRGCYC 4 cut(s) 325, 336, 885, 1021
Eco31I GGTCTC 1 cut(s) 816
Eco32I GATATC 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 529, 648, 929
EcoNI CCTNNNNNAGG 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 4 cut(s) 108, 519, 925, 968
EcoRV GATATC 1 cut(s) 423
EcoT38I GRGCYC 4 cut(s) 325, 336, 885, 1021
FaeI CATG 2 cut(s) 223, 291
FaiI YATR 6 cut(s) 104, 152, 221, 289, 475, 562
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 219, 287
FauI CCCGC 3 cut(s) 29, 237, 832
Fnu4HI GCNGC 7 cut(s) 93, 193, 196, 258, 594, 818, 889
FokI GGATG 7 cut(s) 107, 152, 257, 476, 734, 784, 909
FriOI GRGCYC 4 cut(s) 325, 336, 885, 1021
Fsp4HI GCNGC 7 cut(s) 93, 193, 196, 258, 594, 818, 889
FspBI CTAG 1 cut(s) 446
FspI TGCGCA 1 cut(s) 1047
GlaI GCGC 1 cut(s) 1047
GluI GCNGC 7 cut(s) 93, 193, 196, 258, 594, 818, 889
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 7 cut(s) 5, 36, 113, 164, 170, 257, 681
HapII CCGG 7 cut(s) 114, 124, 137, 167, 293, 599, 655
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 2 cut(s) 223, 291
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HinfI GANTC 6 cut(s) 185, 230, 393, 398, 524, 983
HpaII CCGG 7 cut(s) 114, 124, 137, 167, 293, 599, 655
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 4 cut(s) 158, 499, 529, 652
Hpy188III TCNNGA 4 cut(s) 124, 137, 899, 987
Hpy8I GTNNAC 1 cut(s) 727
Hpy99I CGWCG 2 cut(s) 341, 641
HpyAV CCTTC 5 cut(s) 61, 373, 559, 896, 952
HpyCH4III ACNGT 5 cut(s) 29, 608, 778, 1003, 1037
HpyCH4IV ACGT 9 cut(s) 84, 224, 339, 384, 412, 501, 549, 639, 671
HpyCH4V TGCA 6 cut(s) 192, 577, 596, 781, 922, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 189
HpyF3I CTNAG 1 cut(s) 753
HpySE526I ACGT 9 cut(s) 84, 224, 339, 384, 412, 501, 549, 639, 671
Hsp92II CATG 2 cut(s) 223, 291
HspAI GCGC 1 cut(s) 1046
Kpn2I TCCGGA 2 cut(s) 123, 136
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 207, 859, 1006, 1027
LmnI GCTCC 1 cut(s) 1024
Lsp1109I GCAGC 2 cut(s) 204, 580
LweI GCATC 2 cut(s) 126, 931
MaeI CTAG 1 cut(s) 446
MaeII ACGT 9 cut(s) 84, 224, 339, 384, 412, 501, 549, 639, 671
MaeIII GTNAC 1 cut(s) 608
MalI GATC 4 cut(s) 209, 861, 1008, 1029
MboI GATC 4 cut(s) 207, 859, 1006, 1027
MboII GAAGA 6 cut(s) 36, 52, 55, 64, 517, 802
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 5 cut(s) 251, 325, 336, 885, 1021
MluCI AATT 2 cut(s) 377, 616
MlyI GAGTC 3 cut(s) 179, 224, 518
MmeI TCCRAC 4 cut(s) 207, 372, 426, 675
MroI TCCGGA 2 cut(s) 123, 136
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 2 cut(s) 218, 951
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 7 cut(s) 114, 124, 137, 167, 293, 599, 655
MspR9I CCNGG 7 cut(s) 110, 167, 293, 521, 656, 927, 970
MvaI CCWGG 4 cut(s) 110, 521, 927, 970
MvnI CGCG 3 cut(s) 95, 467, 614
MwoI GCNNNNNNNGC 2 cut(s) 114, 189
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 3 cut(s) 167, 293, 656
NdeII GATC 4 cut(s) 207, 859, 1006, 1027
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 223, 291
NlaIV GGNNCC 5 cut(s) 165, 209, 680, 872, 1020
NmeAIII GCCGAG 1 cut(s) 864
NmuCI GTSAC 1 cut(s) 608
NsbI TGCGCA 1 cut(s) 1047
NspI RCATGY 1 cut(s) 291
NspV TTCGAA 2 cut(s) 665, 1056
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 540
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 393, 398, 983
Pfl23II CGTACG 2 cut(s) 433, 1023
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 7 cut(s) 94, 194, 197, 259, 595, 819, 890
PleI GAGTC 3 cut(s) 179, 224, 518
PpsI GAGTC 3 cut(s) 179, 224, 518
Ppu21I YACGTR 1 cut(s) 413
Psp1406I AACGTT 2 cut(s) 384, 671
Psp6I CCWGG 4 cut(s) 108, 519, 925, 968
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 4 cut(s) 108, 519, 925, 968
PspLI CGTACG 2 cut(s) 433, 1023
PspN4I GGNNCC 5 cut(s) 165, 209, 680, 872, 1020
PspPI GGNCC 6 cut(s) 34, 163, 529, 648, 679, 929
PstI CTGCAG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 6 cut(s) 342, 411, 435, 518, 605, 1025
RsaNI GTAC 6 cut(s) 341, 410, 434, 517, 604, 1024
RseI CAYNNNNRTG 2 cut(s) 218, 951
SatI GCNGC 7 cut(s) 93, 193, 196, 258, 594, 818, 889
Sau3AI GATC 4 cut(s) 207, 859, 1006, 1027
Sau96I GGNCC 6 cut(s) 34, 163, 529, 648, 679, 929
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 3 cut(s) 179, 224, 518
ScrFI CCNGG 7 cut(s) 110, 167, 293, 521, 656, 927, 970
SduI GDGCHC 5 cut(s) 251, 325, 336, 885, 1021
SfaNI GCATC 2 cut(s) 126, 931
SfcI CTRYAG 1 cut(s) 190
SfuI TTCGAA 2 cut(s) 665, 1056
SinI GGWCC 3 cut(s) 529, 648, 929
SmiMI CAYNNNNRTG 2 cut(s) 218, 951
Sse9I AATT 2 cut(s) 377, 616
SsiI CCGC 8 cut(s) 22, 93, 195, 244, 258, 818, 839, 888
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 7 cut(s) 108, 165, 291, 519, 654, 925, 968
TaaI ACNGT 5 cut(s) 29, 608, 778, 1003, 1037
TaiI ACGT 9 cut(s) 87, 227, 342, 387, 415, 504, 552, 642, 674
TaqI TCGA 8 cut(s) 303, 330, 391, 396, 543, 665, 986, 1056
TasI AATT 2 cut(s) 377, 616
TatI WGTACW 1 cut(s) 603
TauI GCSGC 5 cut(s) 95, 198, 260, 820, 891
TfiI GAWTC 3 cut(s) 393, 398, 983
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 2 cut(s) 192, 593
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 1 cut(s) 935
TspGWI ACGGA 2 cut(s) 421, 1011
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 3 cut(s) 529, 648, 929
XagI CCTNNNNNAGG 1 cut(s) 973
XapI RAATTY 2 cut(s) 377, 616
XceI RCATGY 1 cut(s) 291
XspI CTAG 1 cut(s) 446
ZrmI AGTACT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.