Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Forward (+)

15023706 .. 15024681

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCTCCTCCCCGACAACCCGCCACCGTCTGGGCCTCCTGTCTTCCCCCTTCCTCCTCTTCTTCGTCCTCTTCCACTACCACGTCCCAGCCGCGAAAGGTATACGCTTGGCCGGCATCATCCGGAAGCCCTCTCCGGATGTTGCCAACATATTCCGAGAGGCCCCGGCCTTTCGGAATGGCGACTTCTGCAGCGACGAGGAAAAGATCCATATTGCCATGACGTTGGACTCTAACTACTTGCGGGGCACGATGGCCGCCGTGCTTTCCATCCTCCAGCACTCCACATGCCCGGAGATGGTCGAGTTCCACTTCCTGTGGGCCCGGTTCGAGCCCGACGTACTCTCCAACATCAATGCCACCTTCCCCTATCTCAAATTCAGCGTTTACCGATTCGATTCCAAGAAGGTACGTGGCAAGATATCAAAGTCCGTACGCCAAGCCCTAGACCAGCCCTTGAACTACGCGAGAATATACCTTGCTGACATCATCCCATCGGACGTGAAGAGGGTTTTGTACCTGGACTCGGACCTCGTGGTGGTCGATGACGTGGCGAAGCTATGGAAGGTTGACTTGCAAGGCAAGGTATTGGCTGCACCGGAATACTGTCACGCGAATTTCACACAATACTTTACCGACGTGTTTTGGTCCGACCGGGAACTTTCGAAAACGTTTGGGGGCCGAAATCCTTGCTATTTCAATACAGGGGTGATGGTGGTGGATGTAGACAGGTGGAGACAAGGTGGCTACACTAAGAAAATGGAGGAGTGGATGACGGTGCAGAAGCAGAAGAGGATTTACCACTTGGGGTCTCTGCCGCCGTTTTTGTTGGTTTTGGCGGGAGATATTAGGGCTGTGGATCACAGGTGGAACCAACACGGGCTCGGCGGCGACAATCTTGAAGGAAAATCTTGCTTCATTGGAGTGGGAAGGGAAAACCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

316

Amino Acids

35.9

Weight (kDa)

8.97

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	71 - 303	3.9e-51	Glycosyl transferase family 8
Glyco_transf_24	PF18404	88 - 250	1.9e-09	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	2 cut(s)	103, 726
AccII	CGCG	3 cut(s)	95, 467, 614
AccIII	TCCGGA	2 cut(s)	123, 136
AciI	CCGC	7 cut(s)	22, 93, 244, 258, 818, 839, 888
AclI	AACGTT	1 cut(s)	671
AclWI	GGATC	2 cut(s)	202, 867
AcoI	YGGCCR	2 cut(s)	111, 255
AcsI	RAATTY	2 cut(s)	377, 616
AfaI	GTAC	4 cut(s)	342, 411, 435, 518
AfiI	CCNNNNNNNGG	4 cut(s)	31, 298, 526, 538
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	460, 700, 902
AjiI	CACGTC	4 cut(s)	85, 502, 550, 640
AjnI	CCWGG	2 cut(s)	519, 940
AluBI	AGCT	1 cut(s)	559
AluI	AGCT	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	730, 816
AlwI	GGATC	2 cut(s)	202, 867
Aor13HI	TCCGGA	2 cut(s)	123, 136
AoxI	GGCC	8 cut(s)	3, 34, 111, 162, 168, 255, 321, 679
ApaI	GGGCCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	192, 593
ApoI	RAATTY	2 cut(s)	377, 616
AspS9I	GGNCC	7 cut(s)	34, 163, 321, 322, 529, 648, 679
AsuC2I	CCSGG	4 cut(s)	167, 293, 325, 656
AsuHPI	GGTGA	1 cut(s)	721
AsuII	TTCGAA	1 cut(s)	665
AvaII	GGWCC	2 cut(s)	529, 648
BaeGI	GKGCMC	2 cut(s)	251, 325
BanII	GRGCYC	3 cut(s)	325, 336, 885
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BauI	CACGAG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	204, 580
BccI	CCATC	5 cut(s)	247, 278, 292, 502, 706
BceAI	ACGGC	2 cut(s)	245, 805
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BciT130I	CCWGG	2 cut(s)	521, 942
BcnI	CCSGG	4 cut(s)	167, 293, 325, 656
BcoDI	GTCTC	2 cut(s)	730, 816
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	6 cut(s)	93, 193, 258, 594, 818, 889
BlsI	GCNGC	6 cut(s)	94, 194, 259, 595, 819, 890
Bme1390I	CCNGG	6 cut(s)	167, 293, 325, 521, 656, 942
Bme18I	GGWCC	2 cut(s)	529, 648
BmgBI	CACGTC	4 cut(s)	85, 502, 550, 640
BmgT120I	GGNCC	7 cut(s)	34, 163, 321, 322, 529, 648, 679
BmiI	GGNNCC	4 cut(s)	165, 323, 680, 872
BmrFI	CCNGG	6 cut(s)	167, 293, 325, 521, 656, 942
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	665
BpuMI	CCSGG	4 cut(s)	167, 293, 325, 656
BsaAI	YACGTR	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	165, 940
BsaWI	WCCGGW	3 cut(s)	123, 136, 598
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 727, 757
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 298, 526, 538
Bse118I	RCCGGY	1 cut(s)	113
BseAI	TCCGGA	2 cut(s)	123, 136
BseBI	CCWGG	2 cut(s)	521, 942
BseDI	CCNNGG	2 cut(s)	165, 940
BseGI	GGATG	6 cut(s)	120, 145, 270, 489, 727, 777
BseLI	CCNNNNNNNGG	4 cut(s)	31, 298, 526, 538
BseRI	GAGGAG	2 cut(s)	47, 779
BseSI	GKGCMC	2 cut(s)	251, 325
BseXI	GCAGC	2 cut(s)	204, 580
BseYI	CCCAGC	1 cut(s)	88
BsgI	GTGCAG	2 cut(s)	579, 800
Bsh1236I	CGCG	3 cut(s)	95, 467, 614
Bsh1285I	CGRYCG	1 cut(s)	655
BshFI	GGCC	8 cut(s)	5, 36, 113, 164, 170, 257, 323, 681
BsiEI	CGRYCG	1 cut(s)	655
BsiSI	CCGG	8 cut(s)	114, 124, 137, 167, 293, 325, 599, 655
BsiWI	CGTACG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	31, 298, 526, 538
BsmAI	GTCTC	2 cut(s)	730, 816
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	8 cut(s)	5, 36, 113, 164, 170, 257, 323, 681
Bso31I	GGTCTC	1 cut(s)	816
Bsp119I	TTCGAA	1 cut(s)	665
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	4 cut(s)	251, 325, 336, 885
Bsp13I	TCCGGA	2 cut(s)	123, 136
Bsp143I	GATC	2 cut(s)	207, 859
BspACI	CCGC	7 cut(s)	22, 93, 244, 258, 818, 839, 888
BspANI	GGCC	8 cut(s)	5, 36, 113, 164, 170, 257, 323, 681
BspEI	TCCGGA	2 cut(s)	123, 136
BspFNI	CGCG	3 cut(s)	95, 467, 614
BspLI	GGNNCC	4 cut(s)	165, 323, 680, 872
BspMAI	CTGCAG	1 cut(s)	194
BspPI	GGATC	2 cut(s)	202, 867
BspT104I	TTCGAA	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	165, 940
BssMI	GATC	2 cut(s)	207, 859
BssNAI	GTATAC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	533
Bst1107I	GTATAC	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	533
Bst2UI	CCWGG	2 cut(s)	521, 942
Bst4CI	ACNGT	3 cut(s)	29, 608, 778
Bst6I	CTCTTC	4 cut(s)	65, 77, 500, 785
BstBAI	YACGTR	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	6 cut(s)	120, 145, 270, 489, 727, 777
BstFNI	CGCG	3 cut(s)	95, 467, 614
BstKTI	GATC	2 cut(s)	210, 862
BstMAI	GTCTC	2 cut(s)	730, 816
BstMBI	GATC	2 cut(s)	207, 859
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 189
BstNI	CCWGG	2 cut(s)	521, 942
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	6 cut(s)	165, 291, 323, 519, 654, 940
BstSFI	CTRYAG	1 cut(s)	190
BstSLI	GKGCMC	2 cut(s)	251, 325
BstUI	CGCG	3 cut(s)	95, 467, 614
BstV1I	GCAGC	2 cut(s)	204, 580
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	207
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	104
BsuRI	GGCC	8 cut(s)	5, 36, 113, 164, 170, 257, 323, 681
BtrI	CACGTC	4 cut(s)	85, 502, 550, 640
BtsCI	GGATG	6 cut(s)	120, 145, 270, 489, 727, 777
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	7 cut(s)	34, 163, 321, 322, 529, 648, 679
Csp6I	GTAC	4 cut(s)	341, 410, 434, 517
CviAII	CATG	2 cut(s)	220, 288
CviQI	GTAC	4 cut(s)	341, 410, 434, 517
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	2 cut(s)	209, 861
DpnII	GATC	2 cut(s)	207, 859
EaeI	YGGCCR	2 cut(s)	111, 255
Eam1104I	CTCTTC	4 cut(s)	65, 77, 500, 785
EarI	CTCTTC	4 cut(s)	65, 77, 500, 785
Eco24I	GRGCYC	3 cut(s)	325, 336, 885
Eco31I	GGTCTC	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	529, 648
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	519, 940
EcoRV	GATATC	1 cut(s)	423
EcoT38I	GRGCYC	3 cut(s)	325, 336, 885
FaeI	CATG	2 cut(s)	223, 291
FaiI	YATR	7 cut(s)	104, 152, 213, 221, 289, 475, 562
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	219, 287
FauI	CCCGC	3 cut(s)	29, 237, 832
FblI	GTMKAC	2 cut(s)	103, 726
Fnu4HI	GCNGC	6 cut(s)	93, 193, 258, 594, 818, 889
FokI	GGATG	6 cut(s)	107, 152, 257, 476, 734, 784
FriOI	GRGCYC	3 cut(s)	325, 336, 885
Fsp4HI	GCNGC	6 cut(s)	93, 193, 258, 594, 818, 889
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	6 cut(s)	93, 193, 258, 594, 818, 889
GsaI	CCCAGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	8 cut(s)	5, 36, 113, 164, 170, 257, 323, 681
HapII	CCGG	8 cut(s)	114, 124, 137, 167, 293, 325, 599, 655
Hin1II	CATG	2 cut(s)	223, 291
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	4 cut(s)	230, 393, 398, 524
HpaII	CCGG	8 cut(s)	114, 124, 137, 167, 293, 325, 599, 655
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	4 cut(s)	104, 388, 571, 727
Hpy188I	TCNGA	5 cut(s)	158, 177, 499, 529, 652
Hpy188III	TCNNGA	3 cut(s)	124, 137, 899
Hpy8I	GTNNAC	4 cut(s)	104, 388, 571, 727
Hpy99I	CGWCG	3 cut(s)	200, 341, 641
HpyAV	CCTTC	6 cut(s)	61, 373, 400, 559, 896, 924
HpyCH4III	ACNGT	3 cut(s)	29, 608, 778
HpyCH4IV	ACGT	8 cut(s)	84, 224, 339, 412, 501, 549, 639, 671
HpyCH4V	TGCA	4 cut(s)	192, 577, 596, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 189
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	8 cut(s)	84, 224, 339, 412, 501, 549, 639, 671
Hsp92II	CATG	2 cut(s)	223, 291
Kpn2I	TCCGGA	2 cut(s)	123, 136
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	207, 859
Lsp1109I	GCAGC	2 cut(s)	204, 580
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	8 cut(s)	84, 224, 339, 412, 501, 549, 639, 671
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	209, 861
MboI	GATC	2 cut(s)	207, 859
MboII	GAAGA	6 cut(s)	36, 52, 55, 64, 517, 802
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	4 cut(s)	251, 325, 336, 885
MluCI	AATT	2 cut(s)	377, 616
MlyI	GAGTC	2 cut(s)	224, 518
MmeI	TCCRAC	3 cut(s)	207, 372, 675
MroI	TCCGGA	2 cut(s)	123, 136
MroNI	GCCGGC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	923
MspI	CCGG	8 cut(s)	114, 124, 137, 167, 293, 325, 599, 655
MspR9I	CCNGG	6 cut(s)	167, 293, 325, 521, 656, 942
MvaI	CCWGG	2 cut(s)	521, 942
MvnI	CGCG	3 cut(s)	95, 467, 614
MwoI	GCNNNNNNNGC	2 cut(s)	114, 189
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	4 cut(s)	167, 293, 325, 656
NdeII	GATC	2 cut(s)	207, 859
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	223, 291
NlaIV	GGNNCC	4 cut(s)	165, 323, 680, 872
NmeAIII	GCCGAG	1 cut(s)	864
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	2 cut(s)	336, 540
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	393, 398
Pfl23II	CGTACG	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	6 cut(s)	94, 194, 259, 595, 819, 890
PleI	GAGTC	2 cut(s)	224, 518
PpsI	GAGTC	2 cut(s)	224, 518
Ppu21I	YACGTR	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	2 cut(s)	519, 940
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	519, 940
PspLI	CGTACG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	165, 323, 680, 872
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	7 cut(s)	34, 163, 321, 322, 529, 648, 679
PstI	CTGCAG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	4 cut(s)	342, 411, 435, 518
RsaNI	GTAC	4 cut(s)	341, 410, 434, 517
RseI	CAYNNNNRTG	1 cut(s)	923
SatI	GCNGC	6 cut(s)	93, 193, 258, 594, 818, 889
Sau3AI	GATC	2 cut(s)	207, 859
Sau96I	GGNCC	7 cut(s)	34, 163, 321, 322, 529, 648, 679
SchI	GAGTC	2 cut(s)	224, 518
ScrFI	CCNGG	6 cut(s)	167, 293, 325, 521, 656, 942
SduI	GDGCHC	4 cut(s)	251, 325, 336, 885
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	665
SinI	GGWCC	2 cut(s)	529, 648
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	2 cut(s)	377, 616
SsiI	CCGC	7 cut(s)	22, 93, 244, 258, 818, 839, 888
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	6 cut(s)	165, 291, 323, 519, 654, 940
TaaI	ACNGT	3 cut(s)	29, 608, 778
TaiI	ACGT	8 cut(s)	87, 227, 342, 415, 504, 552, 642, 674
TaqI	TCGA	5 cut(s)	303, 330, 396, 543, 665
TasI	AATT	2 cut(s)	377, 616
TauI	GCSGC	4 cut(s)	95, 260, 820, 891
TfiI	GAWTC	2 cut(s)	393, 398
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	192, 593
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	1 cut(s)	907
TspGWI	ACGGA	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	529, 648
XapI	RAATTY	2 cut(s)	377, 616
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	2 cut(s)	103, 726
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.