Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Reverse (-)

42064304 .. 42065723

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACCCTAACTCAGACCCCACAAAACACCCAAACCCTCGTAAGGGAGGGGACTTATAATCCTAATCACCTCGGCCTCATGTGCATCCTCCTCTACCCCAACGTTGGCATTCGTCTCGGCTCTGTCCGTCGTCCCTCCCAGGACATCCCCGTCTTTCGGGAAGCCCCGGCCTTTCGGAACGGTGACCAATGCAGCTCGGGAAATAACACTGACGATATCCATGTGGCCATGACCCTCGACGCCAATTACATCCGGGGCACGATGGCTGCTGTCTTCTCTTTGTTGCAACATTCTACCTGCCCTGAAAACCTCAAGTTCCACTTTCTATCTGCCAATGTTGCGCCGGAGCTATTTTCTAGAATCAACTCCACGTTTCCTTACTTGGACTTCAAGACTTACCCCTTTGATTCAAACAGAGTTCGTGGGAAGATATCAAGGTCCATAAGACGAGCATTGGATCAACCTATAAATTATGCGAGAATTTACCTCGCTGATCTTCTTCCAAGTGATATTAGGCGTGTTATTTACTTGGATTCGGACCTCGTTGTGGTCGACGACATTGCGAAGCTGTGGGGCGTGGACATGGAAGACAAGGTGGTGGCTGCCCCAGAATATTGTCAAGCAAATTTCACACAATACTTCACAGATGCATTATGGTCCGACCCGGATTTGTCAAAGACGTTCCGAGGAAGAAACCCATGTTATTTCAACACAGGAGTGATGGTGGTGGATGTGGATAAATGGAGAAAAGGAGGGTATACACAGAAAATAGAGGAGTGGATGGCCCTGCAAAAGAGAAAGAGGCTATACCATTTGGGGTCTTTGCCGCCGTTTTTGCTGGTTTTGGCTGGGAACATCAAGGCTGTGGATCACAGGTGGAACCAACATGGGCTTGGTGGTGACAACTTTGAAGGAAAGTGTAGACGTCTCCACCCAGGTCCCATTAGTCTTCTTCATTGGAGCGGAAAGGGGAAGCCATGGTTGCGGTTGGATTCTAGTAGAACATGTACTGTCGATCATCTTTGGGTGCCATACGATCTCTACCAGTCTTCGAGAAGCTTTCTGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

357

Amino Acids

40.87

Weight (kDa)

8.74

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	74 - 329	1.7e-58	Glycosyl transferase family 8
Glyco_transf_24	PF18404	90 - 253	1.1e-08	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	1027
AccBSI	CCGCTC	1 cut(s)	963
AccI	GTMKAC	3 cut(s)	552, 758, 922
AciI	CCGC	3 cut(s)	827, 963, 985
AclI	AACGTT	1 cut(s)	102
AclWI	GGATC	2 cut(s)	465, 876
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	480, 625
AcyI	GRCGYC	2 cut(s)	240, 925
AfaI	GTAC	1 cut(s)	1009
AfiI	CCNNNNNNNGG	5 cut(s)	42, 43, 104, 156, 547
AflIII	ACRYGT	1 cut(s)	1004
AgsI	TTSAA	4 cut(s)	391, 411, 709, 911
AjnI	CCWGG	2 cut(s)	138, 934
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	4 cut(s)	195, 349, 568, 1059
AluI	AGCT	4 cut(s)	195, 349, 568, 1059
Alw26I	GTCTC	2 cut(s)	119, 932
AlwI	GGATC	2 cut(s)	465, 876
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	4 cut(s)	73, 168, 225, 783
ApeKI	GCWGC	3 cut(s)	192, 266, 602
ApoI	RAATTY	2 cut(s)	480, 625
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	5 cut(s)	438, 538, 657, 784, 938
AsuC2I	CCSGG	3 cut(s)	167, 254, 665
AsuHPI	GGTGA	3 cut(s)	59, 194, 911
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	4 cut(s)	438, 538, 657, 938
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	1027
BbsI	GAAGAC	4 cut(s)	265, 594, 941, 1041
BbvI	GCAGC	3 cut(s)	204, 253, 589
BccI	CCATC	3 cut(s)	256, 715, 775
BceAI	ACGGC	1 cut(s)	814
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 542, 576
BciT130I	CCWGG	2 cut(s)	140, 936
BcnI	CCSGG	3 cut(s)	167, 254, 665
BcoDI	GTCTC	2 cut(s)	119, 932
BfaI	CTAG	2 cut(s)	357, 996
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	193, 267, 603, 827
BlsI	GCNGC	4 cut(s)	194, 268, 604, 828
Bme1390I	CCNGG	5 cut(s)	140, 167, 254, 665, 936
Bme18I	GGWCC	4 cut(s)	438, 538, 657, 938
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	5 cut(s)	438, 538, 657, 784, 938
BmiI	GGNNCC	3 cut(s)	881, 940, 1029
BmrFI	CCNGG	5 cut(s)	140, 167, 254, 665, 936
BmsI	GCATC	2 cut(s)	93, 637
BpiI	GAAGAC	4 cut(s)	265, 594, 941, 1041
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	3 cut(s)	167, 254, 665
BsaHI	GRCGYC	2 cut(s)	240, 925
BsaJI	CCNNGG	7 cut(s)	70, 138, 165, 253, 685, 934, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 43, 104, 156, 547
Bse1I	ACTGG	1 cut(s)	1045
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	140, 936
BseDI	CCNNGG	7 cut(s)	70, 138, 165, 253, 685, 934, 977
BseGI	GGATG	5 cut(s)	84, 144, 249, 736, 786
BseLI	CCNNNNNNNGG	5 cut(s)	42, 43, 104, 156, 547
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	1045
BseRI	GAGGAG	2 cut(s)	80, 788
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	204, 253, 589
BseYI	CCCAGC	1 cut(s)	848
BshFI	GGCC	4 cut(s)	75, 170, 227, 785
BshNI	GGYRCC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	4 cut(s)	167, 253, 344, 665
BslFI	GGGAC	3 cut(s)	64, 117, 924
BslI	CCNNNNNNNGG	5 cut(s)	42, 43, 104, 156, 547
BsmAI	GTCTC	2 cut(s)	119, 932
BsmBI	CGTCTC	2 cut(s)	119, 932
BsmFI	GGGAC	3 cut(s)	64, 117, 924
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	75, 170, 227, 785
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	5 cut(s)	457, 493, 868, 1015, 1036
Bsp19I	CCATGG	1 cut(s)	977
BspACI	CCGC	3 cut(s)	827, 963, 985
BspANI	GGCC	4 cut(s)	75, 170, 227, 785
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	881, 940, 1029
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	465, 876
BspT107I	GGYRCC	1 cut(s)	1027
BsrBI	CCGCTC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	1045
BssECI	CCNNGG	7 cut(s)	70, 138, 165, 253, 685, 934, 977
BssMI	GATC	5 cut(s)	457, 493, 868, 1015, 1036
BssNAI	GTATAC	1 cut(s)	759
BssNI	GRCGYC	2 cut(s)	240, 925
BssT1I	CCWWGG	1 cut(s)	977
Bst1107I	GTATAC	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	140, 936
Bst4CI	ACNGT	2 cut(s)	182, 1012
BstACI	GRCGYC	2 cut(s)	240, 925
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	977
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	5 cut(s)	84, 144, 249, 736, 786
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	5 cut(s)	460, 496, 871, 1018, 1039
BstMAI	GTCTC	2 cut(s)	119, 932
BstMBI	GATC	5 cut(s)	457, 493, 868, 1015, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 338, 835, 982
BstNI	CCWGG	2 cut(s)	140, 936
BstNSI	RCATGY	1 cut(s)	1008
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	5 cut(s)	138, 165, 252, 663, 934
BstSLI	GKGCMC	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	204, 253, 589
BstV2I	GAAGAC	4 cut(s)	265, 594, 941, 1041
BstZ17I	GTATAC	1 cut(s)	759
BsuRI	GGCC	4 cut(s)	75, 170, 227, 785
BtgI	CCRYGG	1 cut(s)	977
BtsCI	GGATG	5 cut(s)	84, 144, 249, 736, 786
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	5 cut(s)	438, 538, 657, 784, 938
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	1008
CviAII	CATG	8 cut(s)	79, 221, 229, 583, 699, 887, 978, 1005
CviQI	GTAC	1 cut(s)	1008
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	5 cut(s)	459, 495, 870, 1017, 1038
DpnII	GATC	5 cut(s)	457, 493, 868, 1015, 1036
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	977
Eco32I	GATATC	2 cut(s)	217, 432
Eco47I	GGWCC	4 cut(s)	438, 538, 657, 938
Eco88I	CYCGRG	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	938
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	138, 934
EcoRV	GATATC	2 cut(s)	217, 432
EcoT14I	CCWWGG	1 cut(s)	977
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	977
Esp3I	CGTCTC	2 cut(s)	119, 932
FaeI	CATG	8 cut(s)	82, 224, 232, 586, 702, 890, 981, 1008
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	3 cut(s)	64, 117, 924
FatI	CATG	8 cut(s)	78, 220, 228, 582, 698, 886, 977, 1004
FblI	GTMKAC	3 cut(s)	552, 758, 922
Fnu4HI	GCNGC	4 cut(s)	193, 267, 603, 827
FokI	GGATG	5 cut(s)	71, 131, 236, 743, 793
Fsp4HI	GCNGC	4 cut(s)	193, 267, 603, 827
FspBI	CTAG	2 cut(s)	357, 996
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	4 cut(s)	193, 267, 603, 827
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	4 cut(s)	75, 170, 227, 785
HapII	CCGG	4 cut(s)	167, 253, 344, 665
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	2 cut(s)	240, 925
Hin1II	CATG	8 cut(s)	82, 224, 232, 586, 702, 890, 981, 1008
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	1057
HinfI	GANTC	4 cut(s)	360, 407, 533, 992
HpaII	CCGG	4 cut(s)	167, 253, 344, 665
HphI	GGTGA	3 cut(s)	59, 194, 911
Hpy166II	GTNNAC	4 cut(s)	553, 580, 759, 923
Hpy188I	TCNGA	5 cut(s)	15, 177, 538, 661, 686
Hpy188III	TCNNGA	6 cut(s)	158, 198, 357, 391, 1053, 1064
Hpy8I	GTNNAC	4 cut(s)	553, 580, 759, 923
Hpy99I	CGWCG	3 cut(s)	132, 242, 557
HpyAV	CCTTC	1 cut(s)	905
HpyCH4III	ACNGT	2 cut(s)	182, 1012
HpyCH4IV	ACGT	4 cut(s)	102, 371, 680, 925
HpyCH4V	TGCA	5 cut(s)	84, 192, 286, 650, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 338, 835, 982
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	4 cut(s)	102, 371, 680, 925
Hsp92I	GRCGYC	2 cut(s)	240, 925
Hsp92II	CATG	8 cut(s)	82, 224, 232, 586, 702, 890, 981, 1008
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	5 cut(s)	457, 493, 868, 1015, 1036
LmnI	GCTCC	2 cut(s)	346, 960
Lsp1109I	GCAGC	3 cut(s)	204, 253, 589
LweI	GCATC	2 cut(s)	93, 637
MaeI	CTAG	2 cut(s)	357, 996
MaeII	ACGT	4 cut(s)	102, 371, 680, 925
MaeIII	GTNAC	2 cut(s)	182, 899
MalI	GATC	5 cut(s)	459, 495, 870, 1017, 1038
MbiI	CCGCTC	1 cut(s)	963
MboI	GATC	5 cut(s)	457, 493, 868, 1015, 1036
MboII	GAAGA	9 cut(s)	265, 439, 488, 491, 599, 702, 941, 944, 1041
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	244, 469, 480, 625
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	684, 969
Mox20I	TGGCCA	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	652
MscI	TGGCCA	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	4 cut(s)	167, 253, 344, 665
MspR9I	CCNGG	5 cut(s)	140, 167, 254, 665, 936
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	2 cut(s)	140, 936
MwoI	GCNNNNNNNGC	4 cut(s)	81, 338, 835, 982
NciI	CCSGG	3 cut(s)	167, 254, 665
NcoI	CCATGG	1 cut(s)	977
NdeII	GATC	5 cut(s)	457, 493, 868, 1015, 1036
NlaIII	CATG	8 cut(s)	82, 224, 232, 586, 702, 890, 981, 1008
NlaIV	GGNNCC	3 cut(s)	881, 940, 1029
NmeAIII	GCCGAG	2 cut(s)	51, 96
NmuCI	GTSAC	2 cut(s)	182, 899
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	1 cut(s)	1008
OliI	CACNNNNGTG	1 cut(s)	716
PciI	ACATGT	1 cut(s)	1004
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	4 cut(s)	360, 407, 533, 992
PkrI	GCNGC	4 cut(s)	194, 268, 604, 828
PpuMI	RGGWCCY	1 cut(s)	938
PscI	ACATGT	1 cut(s)	1004
PsiI	TTATAA	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	138, 934
PspEI	GGTNACC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	2 cut(s)	138, 934
PspN4I	GGNNCC	3 cut(s)	881, 940, 1029
PspPI	GGNCC	5 cut(s)	438, 538, 657, 784, 938
PspPPI	RGGWCCY	1 cut(s)	938
RsaI	GTAC	1 cut(s)	1009
RsaNI	GTAC	1 cut(s)	1008
RseI	CAYNNNNRTG	1 cut(s)	716
SalI	GTCGAC	1 cut(s)	551
SatI	GCNGC	4 cut(s)	193, 267, 603, 827
Sau3AI	GATC	5 cut(s)	457, 493, 868, 1015, 1036
Sau96I	GGNCC	5 cut(s)	438, 538, 657, 784, 938
ScrFI	CCNGG	5 cut(s)	140, 167, 254, 665, 936
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	2 cut(s)	93, 637
SinI	GGWCC	4 cut(s)	438, 538, 657, 938
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	244, 469, 480, 625
SsiI	CCGC	3 cut(s)	827, 963, 985
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	2 cut(s)	357, 996
StyD4I	CCNGG	5 cut(s)	138, 165, 252, 663, 934
StyI	CCWWGG	1 cut(s)	977
TaaI	ACNGT	2 cut(s)	182, 1012
TaiI	ACGT	4 cut(s)	105, 374, 683, 928
TaqI	TCGA	4 cut(s)	237, 552, 1014, 1052
TasI	AATT	4 cut(s)	244, 469, 480, 625
TatI	WGTACW	1 cut(s)	1007
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	4 cut(s)	360, 407, 533, 992
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	2 cut(s)	182, 899
TseI	GCWGC	3 cut(s)	192, 266, 602
Tsp45I	GTSAC	2 cut(s)	182, 899
TspDTI	ATGAA	1 cut(s)	944
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	4 cut(s)	438, 538, 657, 938
XapI	RAATTY	2 cut(s)	480, 625
XbaI	TCTAGA	1 cut(s)	356
XceI	RCATGY	1 cut(s)	1008
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890
XmiI	GTMKAC	3 cut(s)	552, 758, 922
XspI	CTAG	2 cut(s)	357, 996
ZraI	GACGTC	1 cut(s)	926
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.