Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Forward (+)

14939162 .. 14940214

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1178900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCCTTGTTGAGTACGCCAACCCCTCTCCCTATACTCCTTGGCCTCCTGTCCATCCTCCTCTTCCACCCCATCACCACCACCTCCGGCATTCGCCTAGGCATCCTTCGCCGTCCCTCCCCTCACCTCCCTGTCTTCCGTGAAGCACCCGCCTTCCGAAACGGGGAGCAATGTGGCTCCGAAAACACGGATGCCATCCATGTTGCCATGACTCTAGATGCTAATTACATCCGCGGCACAATGGCTGCCGTGTTCTCCTTGTTGCAACACTCGACGTGCCCCGAAAACCTCTATTTTCACTTCCTCTCCGCGCGTATTGCACCGGAGTTCTTTTCCAGCATAAAGTCTACGTTCCCTTACTTGAACTTCAAGACATATGCCTTTGATTCGAACCGGGTTCGCTGGAAGATATCAAAATCTATAAGGCAAGCATTGGATCAGCCAATTAATTATGCTAGAATCTATCTTGCTGACATCCTTCCGACCGATATGAGGCGTGTTATATACTTGGACTCGGACCTCATTGTGGTGGACGACATTGCCAAGCTATGGAGCGTGGACATGGAAGACAAGGTGGTGGCTGCACCGGAATATTGCCGGGCAAATTTCTCACAGTATTTCACTGACGCATTTTGGTCTGACCCGGATTTGTCGAAGACATTCCAAGGAAGAAACCCGTGTTATTTCAACACAGGAGTGATGGTGGTGGATGTGGATAAATGGAGGAAAGGAGGGTATACACAGAAGGTTGAGGAGTGGATGGCGTTGCAAAAGCGAAAGAGGCTATACCATTTGGGGTCTTTGCCGCCCTTTCTGCTGGTTTTGGCCGGAAACATCAAGGGTGTGGATCACCGGTGGAACCAGCATGGGTTAGGAGGTGACAACTTTGAAGGAAGGTGTAGGAACCTCCACCCTGGTCCCATTAGTCTTCTGCACTGGAGCGGGAAGGGTAAGCCATGGTTGAGGTTGGACGCCCGGAAGCCATGCACCGTCGATCATCTCTGGGCACCGTACGATCTCTACCATTCGGCGAGACACTTTCTGGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

351

Amino Acids

40.1

Weight (kDa)

8.92

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	67 - 322	7.7e-58	Glycosyl transferase family 8
Glyco_transf_24	PF18404	81 - 245	4.7e-11	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccBSI	CCGCTC	1 cut(s)	942
AccI	GTMKAC	2 cut(s)	347, 737
AccII	CGCG	3 cut(s)	234, 311, 313
AciI	CCGC	6 cut(s)	150, 232, 234, 309, 806, 942
AclWI	GGATC	2 cut(s)	444, 855
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	972
AfaI	GTAC	2 cut(s)	16, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	163, 492, 526, 549
AgeI	ACCGGT	1 cut(s)	852
AgsI	TTSAA	4 cut(s)	364, 370, 688, 890
AjiI	CACGTC	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	913
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	1027
AlwI	GGATC	2 cut(s)	444, 855
AoxI	GGCC	3 cut(s)	3, 43, 825
ApeKI	GCWGC	2 cut(s)	245, 581
ApoI	RAATTY	1 cut(s)	604
AseI	ATTAAT	1 cut(s)	447
AsiGI	ACCGGT	1 cut(s)	852
Asp700I	GAANNNNTTC	1 cut(s)	659
AspA2I	CCTAGG	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	517, 917
AsuC2I	CCSGG	4 cut(s)	395, 599, 644, 976
AsuHPI	GGTGA	4 cut(s)	67, 116, 842, 890
AsuII	TTCGAA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	517, 917
AvrII	CCTAGG	1 cut(s)	97
BaeGI	GKGCMC	2 cut(s)	281, 1009
BanI	GGYRCC	1 cut(s)	1006
BbsI	GAAGAC	4 cut(s)	127, 573, 662, 920
BbvI	GCAGC	2 cut(s)	232, 568
BccI	CCATC	5 cut(s)	62, 80, 203, 694, 754
BceAI	ACGGC	2 cut(s)	96, 233
BciT130I	CCWGG	1 cut(s)	915
BcnI	CCSGG	4 cut(s)	395, 599, 644, 976
BcoDI	GTCTC	1 cut(s)	1027
BfaI	CTAG	3 cut(s)	98, 215, 456
BisI	GCNGC	4 cut(s)	235, 246, 582, 806
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	4 cut(s)	236, 247, 583, 807
Bme1390I	CCNGG	5 cut(s)	395, 599, 644, 915, 976
Bme18I	GGWCC	2 cut(s)	517, 917
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	517, 917
BmiI	GGNNCC	5 cut(s)	178, 860, 905, 919, 1008
BmrFI	CCNGG	5 cut(s)	395, 599, 644, 915, 976
BmsI	GCATC	3 cut(s)	111, 181, 208
BpiI	GAAGAC	4 cut(s)	127, 573, 662, 920
BpmI	CTGGAG	1 cut(s)	958
Bpu14I	TTCGAA	1 cut(s)	389
BpuMI	CCSGG	4 cut(s)	395, 599, 644, 976
BsaHI	GRCGYC	1 cut(s)	972
BsaJI	CCNNGG	6 cut(s)	40, 97, 232, 664, 913, 956
BsaWI	WCCGGW	3 cut(s)	322, 586, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 687, 717
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 492, 526, 549
Bse118I	RCCGGY	1 cut(s)	852
Bse1I	ACTGG	1 cut(s)	941
Bse3DI	GCAATG	2 cut(s)	176, 537
BseBI	CCWGG	1 cut(s)	915
BseDI	CCNNGG	6 cut(s)	40, 97, 232, 664, 913, 956
BseGI	GGATG	8 cut(s)	54, 102, 195, 196, 228, 474, 715, 765
BseLI	CCNNNNNNNGG	4 cut(s)	163, 492, 526, 549
BseMI	GCAATG	2 cut(s)	176, 537
BseNI	ACTGG	1 cut(s)	941
BseRI	GAGGAG	2 cut(s)	50, 767
BseSI	GKGCMC	2 cut(s)	281, 1009
BseXI	GCAGC	2 cut(s)	232, 568
BsgI	GTGCAG	2 cut(s)	567, 917
Bsh1236I	CGCG	3 cut(s)	234, 311, 313
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	3 cut(s)	5, 45, 827
BshNI	GGYRCC	1 cut(s)	1006
BshTI	ACCGGT	1 cut(s)	852
BsiEI	CGRYCG	1 cut(s)	486
BsiSI	CCGG	9 cut(s)	87, 323, 394, 587, 598, 644, 828, 853, 976
BsiWI	CGTACG	1 cut(s)	1011
BslFI	GGGAC	2 cut(s)	99, 903
BslI	CCNNNNNNNGG	4 cut(s)	163, 492, 526, 549
BsmAI	GTCTC	1 cut(s)	1027
BsmFI	GGGAC	2 cut(s)	99, 903
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	5, 45, 827
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	281, 1009
Bsp143I	GATC	4 cut(s)	436, 847, 994, 1015
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	6 cut(s)	150, 232, 234, 309, 806, 942
BspANI	GGCC	3 cut(s)	5, 45, 827
BspFNI	CGCG	3 cut(s)	234, 311, 313
BspLI	GGNNCC	5 cut(s)	178, 860, 905, 919, 1008
BspPI	GGATC	2 cut(s)	444, 855
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	1006
BsrBI	CCGCTC	1 cut(s)	942
BsrDI	GCAATG	2 cut(s)	176, 537
BsrFI	RCCGGY	1 cut(s)	852
BsrI	ACTGG	1 cut(s)	941
BssAI	RCCGGY	1 cut(s)	852
BssECI	CCNNGG	6 cut(s)	40, 97, 232, 664, 913, 956
BssMI	GATC	4 cut(s)	436, 847, 994, 1015
BssNAI	GTATAC	1 cut(s)	738
BssNI	GRCGYC	1 cut(s)	972
BssT1I	CCWWGG	4 cut(s)	40, 97, 664, 956
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	3 cut(s)	615, 991, 1011
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	972
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	429
BstDSI	CCRYGG	2 cut(s)	232, 956
BstF5I	GGATG	8 cut(s)	54, 102, 195, 196, 228, 474, 715, 765
BstFNI	CGCG	3 cut(s)	234, 311, 313
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	439, 850, 997, 1018
BstMAI	GTCTC	1 cut(s)	1027
BstMBI	GATC	4 cut(s)	436, 847, 994, 1015
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 317, 781, 814
BstNI	CCWGG	1 cut(s)	915
BstSCI	CCNGG	5 cut(s)	393, 597, 642, 913, 974
BstSLI	GKGCMC	2 cut(s)	281, 1009
BstUI	CGCG	3 cut(s)	234, 311, 313
BstV1I	GCAGC	2 cut(s)	232, 568
BstV2I	GAAGAC	4 cut(s)	127, 573, 662, 920
BstZ17I	GTATAC	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	5, 45, 827
BtgI	CCRYGG	2 cut(s)	232, 956
BtrI	CACGTC	1 cut(s)	276
BtsCI	GGATG	8 cut(s)	54, 102, 195, 196, 228, 474, 715, 765
BtsIMutI	CAGTG	2 cut(s)	621, 934
Cac8I	GCNNGC	1 cut(s)	429
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	517, 917
Cfr42I	CCGCGG	1 cut(s)	235
CseI	GACGC	2 cut(s)	635, 980
Csp6I	GTAC	2 cut(s)	15, 1012
CspAI	ACCGGT	1 cut(s)	852
CviAII	CATG	6 cut(s)	200, 208, 562, 866, 957, 984
CviQI	GTAC	2 cut(s)	15, 1012
DpnI	GATC	4 cut(s)	438, 849, 996, 1017
DpnII	GATC	4 cut(s)	436, 847, 994, 1015
EaeI	YGGCCR	1 cut(s)	825
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	4 cut(s)	40, 97, 664, 956
Eco32I	GATATC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	517, 917
EcoRII	CCWGG	1 cut(s)	913
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	4 cut(s)	40, 97, 664, 956
ErhI	CCWWGG	4 cut(s)	40, 97, 664, 956
FaeI	CATG	6 cut(s)	203, 211, 565, 869, 960, 987
FaqI	GGGAC	2 cut(s)	99, 903
FatI	CATG	6 cut(s)	199, 207, 561, 865, 956, 983
FauI	CCCGC	2 cut(s)	157, 935
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	347, 737
Fnu4HI	GCNGC	4 cut(s)	235, 246, 582, 806
FokI	GGATG	8 cut(s)	41, 89, 182, 203, 215, 461, 722, 772
Fsp4HI	GCNGC	4 cut(s)	235, 246, 582, 806
FspBI	CTAG	3 cut(s)	98, 215, 456
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	4 cut(s)	235, 246, 582, 806
GsuI	CTGGAG	1 cut(s)	958
HaeIII	GGCC	3 cut(s)	5, 45, 827
HapII	CCGG	9 cut(s)	87, 323, 394, 587, 598, 644, 828, 853, 976
HgaI	GACGC	2 cut(s)	635, 980
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	972
Hin1II	CATG	6 cut(s)	203, 211, 565, 869, 960, 987
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	4 cut(s)	211, 386, 459, 512
HpaII	CCGG	9 cut(s)	87, 323, 394, 587, 598, 644, 828, 853, 976
HphI	GGTGA	4 cut(s)	67, 116, 842, 890
Hpy166II	GTNNAC	4 cut(s)	348, 532, 559, 738
Hpy188I	TCNGA	5 cut(s)	158, 181, 483, 517, 640
Hpy188III	TCNNGA	3 cut(s)	215, 370, 1043
Hpy8I	GTNNAC	4 cut(s)	348, 532, 559, 738
Hpy99I	CGWCG	2 cut(s)	277, 995
HpyAV	CCTTC	7 cut(s)	116, 163, 488, 739, 884, 888, 940
HpyCH4III	ACNGT	3 cut(s)	615, 991, 1011
HpyCH4IV	ACGT	2 cut(s)	275, 350
HpyCH4V	TGCA	6 cut(s)	265, 320, 584, 769, 934, 987
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 317, 781, 814
HpySE526I	ACGT	2 cut(s)	275, 350
Hsp92I	GRCGYC	1 cut(s)	972
Hsp92II	CATG	6 cut(s)	203, 211, 565, 869, 960, 987
HspAI	GCGC	1 cut(s)	311
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	436, 847, 994, 1015
LmnI	GCTCC	4 cut(s)	166, 182, 552, 939
Lsp1109I	GCAGC	2 cut(s)	232, 568
LweI	GCATC	3 cut(s)	111, 181, 208
MaeI	CTAG	3 cut(s)	98, 215, 456
MaeII	ACGT	2 cut(s)	275, 350
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	4 cut(s)	438, 849, 996, 1017
MbiI	CCGCTC	1 cut(s)	942
MboI	GATC	4 cut(s)	436, 847, 994, 1015
MboII	GAAGA	7 cut(s)	55, 127, 418, 578, 667, 681, 920
MhlI	GDGCHC	2 cut(s)	281, 1009
MluCI	AATT	4 cut(s)	223, 444, 448, 604
MlyI	GAGTC	2 cut(s)	205, 506
MmeI	TCCRAC	2 cut(s)	506, 948
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	527, 695
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	9 cut(s)	87, 323, 394, 587, 598, 644, 828, 853, 976
MspR9I	CCNGG	5 cut(s)	395, 599, 644, 915, 976
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	915
MvnI	CGCG	3 cut(s)	234, 311, 313
MwoI	GCNNNNNNNGC	4 cut(s)	108, 317, 781, 814
NciI	CCSGG	4 cut(s)	395, 599, 644, 976
NcoI	CCATGG	1 cut(s)	956
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	4 cut(s)	436, 847, 994, 1015
NlaIII	CATG	6 cut(s)	203, 211, 565, 869, 960, 987
NlaIV	GGNNCC	5 cut(s)	178, 860, 905, 919, 1008
NmuCI	GTSAC	1 cut(s)	878
NspV	TTCGAA	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	695
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	386, 459
Pfl23II	CGTACG	1 cut(s)	1011
PflMI	CCANNNNNTGG	1 cut(s)	549
PinAI	ACCGGT	1 cut(s)	852
PkrI	GCNGC	4 cut(s)	236, 247, 583, 807
PleI	GAGTC	2 cut(s)	205, 506
PpsI	GAGTC	2 cut(s)	205, 506
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspLI	CGTACG	1 cut(s)	1011
PspN4I	GGNNCC	5 cut(s)	178, 860, 905, 919, 1008
PspPI	GGNCC	2 cut(s)	517, 917
RsaI	GTAC	2 cut(s)	16, 1013
RsaNI	GTAC	2 cut(s)	15, 1012
RseI	CAYNNNNRTG	2 cut(s)	527, 695
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	235, 246, 582, 806
Sau3AI	GATC	4 cut(s)	436, 847, 994, 1015
Sau96I	GGNCC	2 cut(s)	517, 917
SchI	GAGTC	2 cut(s)	205, 506
ScrFI	CCNGG	5 cut(s)	395, 599, 644, 915, 976
SduI	GDGCHC	2 cut(s)	281, 1009
SfaNI	GCATC	3 cut(s)	111, 181, 208
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	852
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	517, 917
SmiMI	CAYNNNNRTG	2 cut(s)	527, 695
Sse9I	AATT	4 cut(s)	223, 444, 448, 604
SsiI	CCGC	6 cut(s)	150, 232, 234, 309, 806, 942
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	3 cut(s)	98, 215, 456
StyD4I	CCNGG	5 cut(s)	393, 597, 642, 913, 974
StyI	CCWWGG	4 cut(s)	40, 97, 664, 956
TaaI	ACNGT	3 cut(s)	615, 991, 1011
TaiI	ACGT	2 cut(s)	278, 353
TaqI	TCGA	4 cut(s)	272, 389, 653, 993
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	4 cut(s)	223, 444, 448, 604
TauI	GCSGC	2 cut(s)	237, 808
TfiI	GAWTC	2 cut(s)	386, 459
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	628, 941
TseFI	GTSAC	1 cut(s)	878
TseI	GCWGC	2 cut(s)	245, 581
Tsp45I	GTSAC	1 cut(s)	878
TspGWI	ACGGA	2 cut(s)	128, 203
TspRI	CASTG	2 cut(s)	628, 941
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	2 cut(s)	517, 917
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	604
XbaI	TCTAGA	1 cut(s)	214
XmaJI	CCTAGG	1 cut(s)	97
XmiI	GTMKAC	2 cut(s)	347, 737
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	3 cut(s)	98, 215, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.