FvH4_4g13990

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
17537036 .. 17538079
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13990.t1

Sequence Viewer

Length: 1044 bp
ATGGCCTTGTGGGCAGCTTCATCTCCTCACCTTCTACTCCTTGGTCTCCTGTCCATTCTCCTCCTCCACCCCAACGTCGGCATTCGCCTCGGCATTGTCCTACGTCCCTCCCCAGTCATCCCCAACTTTCGGGAAGCCCCGGGATTCCAGAACGGTGACCAATGCGGCTCGGGAAACACTGACGATATCCATGTGGCCATGACCCTTGACGCCAATTACATCCAGGGCACAATGGCAGCTGTCTTCTCTTTGTTACAACATTCAACCTGCCCTGAAAACCTCAAGTTCCACTTTCTGTCTGCGCGCGCTGAGCCGGAGCTCTTTTCGAGAATCAAGTCCACCTTCCCCTACTTGAGCTTCAAGACTTACGCCTTTGGTTCAAACAGAGTTCGTGGGAAGATATCAAGGTCCATAAGACGAGCACTGGATCAACCTATGAACTATGCGAGAATTTACCTGGCTCATATTCTTCCAAGTGATATGAGACGTGTTATTTACTTGGATTCAGACCTTGTTGTGGTCGATGACATTGCAAAGCTGTGGGGGGTGGACATGGAAGACAGGGTGGTGGCCGCCCCAGAATATTGCCAAGCAAATTTCACACAATACTTCACAGATGCATTGTGGTCCGACCCGGATTTGTCAAAGACGTTCCGAGGAAGAAAGCCATGTTATTTCAACACAGGTGTGATGGTGATGGATGTAGATAAATGGAGAAAAGGAGGGTATACAAAGAAAGTAGAGGGGTGGATGACCCTGCAAAAGAGAAAGAGGCTATACAATTTGGGGTCTTTGCCGCCATTTTTACTGGTCTTGGCTGGGAACATCAAGGCCGTGGATCACAGATGGAACCAGCATGGACTTGGTGGTGACAACTTTGAAGGAAGGTGTAGGAGACTCCACCCAGGTCCCATTAGTCTTCTTCATTGGAGTGGGAAGGGTAAGCCATGGCTGCGGTTGGATTCTACAAGACCATGCACCGCCGATCATCTTTGGGCGCCATACGATCTCTACCATTCTTCAAAAAGCTTCCTGGAAGAATAG

Protein Analysis

348

Amino Acids

39.41

Weight (kDa)

9.3

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 64 - 319 3e-54 Glycosyl transferase family 8
Glyco_transf_24 PF18404 122 - 241 1.4e-07 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 728
AccII CGCG 2 cut(s) 304, 306
AciI CCGC 5 cut(s) 165, 573, 797, 955, 981
AclWI GGATC 2 cut(s) 435, 846
AcoI YGGCCR 2 cut(s) 195, 570
AcsI RAATTY 2 cut(s) 450, 595
AcyI GRCGYC 2 cut(s) 210, 998
AfiI CCNNNNNNNGG 3 cut(s) 77, 129, 517
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 6 cut(s) 264, 361, 381, 679, 881, 1023
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 4 cut(s) 222, 456, 904, 1032
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 6 cut(s) 17, 239, 319, 357, 538, 1029
AluI AGCT 6 cut(s) 17, 239, 319, 357, 538, 1029
Alw21I GWGCWC 2 cut(s) 321, 424
Alw26I GTCTC 3 cut(s) 50, 478, 889
AlwI GGATC 2 cut(s) 435, 846
Ama87I CYCGRG 2 cut(s) 139, 169
AoxI GGCC 4 cut(s) 3, 195, 570, 831
ApeKI GCWGC 3 cut(s) 14, 236, 952
ApoI RAATTY 2 cut(s) 450, 595
AspLEI GCGC 4 cut(s) 304, 306, 308, 1000
AspS9I GGNCC 3 cut(s) 408, 627, 908
AsuC2I CCSGG 3 cut(s) 140, 141, 635
AsuHPI GGTGA 4 cut(s) 20, 167, 706, 881
AvaI CYCGRG 2 cut(s) 139, 169
AvaII GGWCC 3 cut(s) 408, 627, 908
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 997
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 3 cut(s) 235, 564, 911
Bbv12I GWGCWC 2 cut(s) 321, 424
BbvI GCAGC 3 cut(s) 26, 248, 939
BccI CCATC 3 cut(s) 685, 691, 840
BceAI ACGGC 1 cut(s) 818
BcgI CGANNNNNNTGC 4 cut(s) 70, 104, 512, 546
BciT130I CCWGG 4 cut(s) 224, 458, 906, 1034
BcnI CCSGG 3 cut(s) 140, 141, 635
BcoDI GTCTC 3 cut(s) 50, 478, 889
BfoI RGCGCY 1 cut(s) 1001
BfuAI ACCTGC 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 6 cut(s) 15, 166, 237, 573, 797, 953
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 16, 167, 238, 574, 798, 954
Bme1390I CCNGG 7 cut(s) 140, 141, 224, 458, 635, 906, 1034
Bme18I GGWCC 3 cut(s) 408, 627, 908
BmeT110I CYCGRG 2 cut(s) 139, 169
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 3 cut(s) 408, 627, 908
BmiI GGNNCC 3 cut(s) 851, 910, 999
BmrFI CCNGG 7 cut(s) 140, 141, 224, 458, 635, 906, 1034
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 3 cut(s) 235, 564, 911
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 266, 373
BpuMI CCSGG 3 cut(s) 140, 141, 635
BsaHI GRCGYC 2 cut(s) 210, 998
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 9 cut(s) 40, 88, 138, 139, 223, 655, 834, 904, 947
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 129, 517
Bse1I ACTGG 3 cut(s) 113, 429, 813
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 4 cut(s) 224, 458, 906, 1034
BseDI CCNNGG 9 cut(s) 40, 88, 138, 139, 223, 655, 834, 904, 947
BseGI GGATG 4 cut(s) 117, 219, 706, 756
BseLI CCNNNNNNNGG 3 cut(s) 77, 129, 517
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 113, 429, 813
BsePI GCGCGC 2 cut(s) 302, 304
BseRI GAGGAG 3 cut(s) 15, 50, 53
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 3 cut(s) 26, 248, 939
BseYI CCCAGC 1 cut(s) 818
Bsh1236I CGCG 2 cut(s) 304, 306
BshFI GGCC 4 cut(s) 5, 197, 572, 833
BshNI GGYRCC 1 cut(s) 997
BsiHKAI GWGCWC 2 cut(s) 321, 424
BsiHKCI CYCGRG 2 cut(s) 139, 169
BsiSI CCGG 3 cut(s) 140, 314, 635
BslFI GGGAC 2 cut(s) 90, 894
BslI CCNNNNNNNGG 3 cut(s) 77, 129, 517
BsmAI GTCTC 3 cut(s) 50, 478, 889
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 90, 894
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 4 cut(s) 5, 197, 572, 833
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 2 cut(s) 139, 169
Bsp1286I GDGCHC 3 cut(s) 230, 321, 424
Bsp143I GATC 4 cut(s) 427, 838, 985, 1006
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 947
BspACI CCGC 5 cut(s) 165, 573, 797, 955, 981
BspANI GGCC 4 cut(s) 5, 197, 572, 833
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 2 cut(s) 304, 306
BspLI GGNNCC 3 cut(s) 851, 910, 999
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 435, 846
BspT107I GGYRCC 1 cut(s) 997
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 3 cut(s) 113, 429, 813
BssECI CCNNGG 9 cut(s) 40, 88, 138, 139, 223, 655, 834, 904, 947
BssHII GCGCGC 2 cut(s) 302, 304
BssMI GATC 4 cut(s) 427, 838, 985, 1006
BssNAI GTATAC 1 cut(s) 729
BssNI GRCGYC 2 cut(s) 210, 998
BssT1I CCWWGG 2 cut(s) 40, 947
Bst1107I GTATAC 1 cut(s) 729
Bst2UI CCWGG 4 cut(s) 224, 458, 906, 1034
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 210, 998
BstC8I GCNNGC 2 cut(s) 304, 306
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 2 cut(s) 834, 947
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 4 cut(s) 117, 219, 706, 756
BstFNI CGCG 2 cut(s) 304, 306
BstH2I RGCGCY 1 cut(s) 1001
BstHHI GCGC 4 cut(s) 304, 306, 308, 1000
BstKTI GATC 4 cut(s) 430, 841, 988, 1009
BstMAI GTCTC 3 cut(s) 50, 478, 889
BstMBI GATC 4 cut(s) 427, 838, 985, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 11, 310, 952
BstNI CCWGG 4 cut(s) 224, 458, 906, 1034
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 7 cut(s) 138, 139, 222, 456, 633, 904, 1032
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 2 cut(s) 304, 306
BstV1I GCAGC 3 cut(s) 26, 248, 939
BstV2I GAAGAC 3 cut(s) 235, 564, 911
BstZ17I GTATAC 1 cut(s) 729
BsuRI GGCC 4 cut(s) 5, 197, 572, 833
BtgI CCRYGG 2 cut(s) 834, 947
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 4 cut(s) 117, 219, 706, 756
BtsIMutI CAGTG 2 cut(s) 177, 422
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 2 cut(s) 304, 306
CfoI GCGC 4 cut(s) 304, 306, 308, 1000
Cfr13I GGNCC 3 cut(s) 408, 627, 908
Cfr9I CCCGGG 1 cut(s) 139
CseI GACGC 1 cut(s) 218
CviAII CATG 7 cut(s) 191, 199, 553, 669, 857, 948, 975
DdeI CTNAG 1 cut(s) 309
DinI GGCGCC 1 cut(s) 999
DpnI GATC 4 cut(s) 429, 840, 987, 1008
DpnII GATC 4 cut(s) 427, 838, 985, 1006
EaeI YGGCCR 2 cut(s) 195, 570
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 40, 947
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 2 cut(s) 187, 402
Eco47I GGWCC 3 cut(s) 408, 627, 908
Eco53kI GAGCTC 1 cut(s) 319
Eco88I CYCGRG 2 cut(s) 139, 169
Eco91I GGTNACC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 4 cut(s) 222, 456, 904, 1032
EcoRV GATATC 2 cut(s) 187, 402
EcoT14I CCWWGG 2 cut(s) 40, 947
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 999
EheI GGCGCC 1 cut(s) 999
ErhI CCWWGG 2 cut(s) 40, 947
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 7 cut(s) 194, 202, 556, 672, 860, 951, 978
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 326, 358
FaqI GGGAC 2 cut(s) 90, 894
FatI CATG 7 cut(s) 190, 198, 552, 668, 856, 947, 974
FblI GTMKAC 1 cut(s) 728
Fnu4HI GCNGC 6 cut(s) 15, 166, 237, 573, 797, 953
FokI GGATG 4 cut(s) 104, 206, 713, 763
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 6 cut(s) 15, 166, 237, 573, 797, 953
GlaI GCGC 4 cut(s) 303, 305, 307, 999
GluI GCNGC 6 cut(s) 15, 166, 237, 573, 797, 953
GsaI CCCAGC 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 1001
HaeIII GGCC 4 cut(s) 5, 197, 572, 833
HapII CCGG 3 cut(s) 140, 314, 635
HgaI GACGC 1 cut(s) 218
HhaI GCGC 4 cut(s) 304, 306, 308, 1000
Hin1I GRCGYC 2 cut(s) 210, 998
Hin1II CATG 7 cut(s) 194, 202, 556, 672, 860, 951, 978
Hin6I GCGC 4 cut(s) 302, 304, 306, 998
HinP1I GCGC 4 cut(s) 302, 304, 306, 998
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 5 cut(s) 144, 330, 503, 897, 962
HpaII CCGG 3 cut(s) 140, 314, 635
HphI GGTGA 4 cut(s) 20, 167, 706, 881
Hpy166II GTNNAC 3 cut(s) 339, 550, 729
Hpy188I TCNGA 3 cut(s) 508, 631, 656
Hpy188III TCNNGA 5 cut(s) 131, 148, 171, 327, 361
Hpy8I GTNNAC 3 cut(s) 339, 550, 729
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 5 cut(s) 41, 352, 875, 879, 931
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 4 cut(s) 75, 103, 487, 650
HpyCH4V TGCA 4 cut(s) 533, 620, 760, 978
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 310, 952
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 4 cut(s) 75, 103, 487, 650
Hsp92I GRCGYC 2 cut(s) 210, 998
Hsp92II CATG 7 cut(s) 194, 202, 556, 672, 860, 951, 978
HspAI GCGC 4 cut(s) 302, 304, 306, 998
KasI GGCGCC 1 cut(s) 997
Kzo9I GATC 4 cut(s) 427, 838, 985, 1006
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 26, 248, 939
LweI GCATC 1 cut(s) 607
MaeII ACGT 4 cut(s) 75, 103, 487, 650
MaeIII GTNAC 3 cut(s) 155, 252, 869
MalI GATC 4 cut(s) 429, 840, 987, 1008
MboI GATC 4 cut(s) 427, 838, 985, 1006
MboII GAAGA 8 cut(s) 235, 409, 461, 569, 672, 911, 914, 1011
MhlI GDGCHC 3 cut(s) 230, 321, 424
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 4 cut(s) 214, 450, 595, 781
MluNI TGGCCA 1 cut(s) 197
Mly113I GGCGCC 1 cut(s) 998
MlyI GAGTC 1 cut(s) 891
MmeI TCCRAC 2 cut(s) 654, 939
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 622
MscI TGGCCA 1 cut(s) 197
MslI CAYNNNNRTG 2 cut(s) 686, 930
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 140, 314, 635
MspR9I CCNGG 7 cut(s) 140, 141, 224, 458, 635, 906, 1034
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 4 cut(s) 224, 458, 906, 1034
MvnI CGCG 2 cut(s) 304, 306
MwoI GCNNNNNNNGC 3 cut(s) 11, 310, 952
NarI GGCGCC 1 cut(s) 998
NciI CCSGG 3 cut(s) 140, 141, 635
NcoI CCATGG 1 cut(s) 947
NdeII GATC 4 cut(s) 427, 838, 985, 1006
NlaIII CATG 7 cut(s) 194, 202, 556, 672, 860, 951, 978
NlaIV GGNNCC 3 cut(s) 851, 910, 999
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 2 cut(s) 155, 869
NsiI ATGCAT 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 686
PauI GCGCGC 2 cut(s) 302, 304
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 4 cut(s) 144, 330, 503, 962
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 6 cut(s) 16, 167, 238, 574, 798, 954
PleI GAGTC 1 cut(s) 891
PluTI GGCGCC 1 cut(s) 1001
PpsI GAGTC 1 cut(s) 891
PpuMI RGGWCCY 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 4 cut(s) 222, 456, 904, 1032
PspEI GGTNACC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 4 cut(s) 222, 456, 904, 1032
PspN4I GGNNCC 3 cut(s) 851, 910, 999
PspPI GGNCC 3 cut(s) 408, 627, 908
PspPPI RGGWCCY 1 cut(s) 908
PteI GCGCGC 2 cut(s) 302, 304
PvuII CAGCTG 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 686, 930
SacI GAGCTC 1 cut(s) 321
SatI GCNGC 6 cut(s) 15, 166, 237, 573, 797, 953
Sau3AI GATC 4 cut(s) 427, 838, 985, 1006
Sau96I GGNCC 3 cut(s) 408, 627, 908
SchI GAGTC 1 cut(s) 891
ScrFI CCNGG 7 cut(s) 140, 141, 224, 458, 635, 906, 1034
SduI GDGCHC 3 cut(s) 230, 321, 424
SfaNI GCATC 1 cut(s) 607
SfoI GGCGCC 1 cut(s) 999
SinI GGWCC 3 cut(s) 408, 627, 908
SmaI CCCGGG 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 686, 930
SmlI CTYRAG 2 cut(s) 281, 352
SmoI CTYRAG 2 cut(s) 281, 352
Sse9I AATT 4 cut(s) 214, 450, 595, 781
SsiI CCGC 5 cut(s) 165, 573, 797, 955, 981
SspDI GGCGCC 1 cut(s) 997
SspI AATATT 1 cut(s) 584
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 7 cut(s) 138, 139, 222, 456, 633, 904, 1032
StyI CCWWGG 2 cut(s) 40, 947
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 4 cut(s) 78, 106, 490, 653
TaqI TCGA 2 cut(s) 326, 522
TasI AATT 4 cut(s) 214, 450, 595, 781
TauI GCSGC 3 cut(s) 168, 575, 799
TfiI GAWTC 4 cut(s) 144, 330, 503, 962
TscAI CASTG 2 cut(s) 184, 429
TseFI GTSAC 2 cut(s) 155, 869
TseI GCWGC 3 cut(s) 14, 236, 952
Tsp45I GTSAC 2 cut(s) 155, 869
TspDTI ATGAA 3 cut(s) 9, 452, 914
TspMI CCCGGG 1 cut(s) 139
TspRI CASTG 2 cut(s) 184, 429
VpaK11BI GGWCC 3 cut(s) 408, 627, 908
XapI RAATTY 2 cut(s) 450, 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmaI CCCGGG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.