Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Reverse (-)

35474376 .. 35475470

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1271300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCCACCTCATCGACATCTCATGGCCTCCTGTCTCTCCTCCTCCTCATCTTCCTCCACTGCCTCACCCATGGTGCCGCCACCACAGGCATCCGCCTTGGCATCATTCGGAAAATTTCTCCAGATGTTGCCATCTTTCAAGAAGCTCCAGCTTTTCGAAACGGGGATGTTTGCGAGCATGCAAAGAAAATTCACATCGCTATGACACTTGACTCCAATTACCTAAGAGGCACCATGTCGGCTGTGCTTTCAATCCTGCAACACTCGACGTGCCCAGAGATTGTCGAGTTTCACTTTCTCTGGGCACGGTTCGAGCCCGAGGTGCTCTCCAACATCAAATCCACCTTCCCCTACCTCAAATTCAACGTCTACCGCTTCGATTCGAAGAGGGTACGTGGGAAAATATCAAAGTCGATACGTCAAGCCTTGGACCAACCCTTAAACTATGCACGTATTTACCTAGCCGACATAATCCCAGTTGATGTGAATAGGGTTCTATACCTAGACTCGGACCTTGTGGTTGTGGATGACGTGGCAAAGTTATGGAAGGTTGACTTGCAAGGCAAGGTATTGGCAGCGCCAGAATATTGCCATGCAAACTTCACCCAATATTTCACAGAATCGTTCTGGTCCGACAACGAAATGTCCAAAACGTTTGAGGGCAGAAATCCTTGCTATTTCAACACAGGGGTGATGGTGGTGGACGTGGATAAATGGAGACAAGGTGGGTACACTAAGAAAATGGAGGAGTGGATGCTAGTGCAGAAGCAGAAGCGAATTTACCATTTGGGGTCTTTGCCGCCGTTTTTGTTGGTTTTGGCTGGGGACATCACGGCCGTTCATCACAGGTGGAACCAGCATGGACTTGGTGGGGATAATCTCGAAGGCAAGTGTAGGAGTTTGCATCCTGGCCCTATAAGCTTGCTGCATTGGAGTGGGAAGGGCAAGCCCTGGTTGAGGTTAGATTCAAGAAGGCCCTGCACCGTTGATCATCTGTGGGCCCCTTATGATCTCTACCGTTCATCAACTCATTATTTTGAAGAACGAGAGATGATGAGATCAACGGTGTGGGAAGGGCAAGAAGGTGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

365

Amino Acids

41.8

Weight (kDa)

8.56

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	65 - 320	7.5e-58	Glycosyl transferase family 8
Glyco_transf_24	PF18404	82 - 244	4.5e-10	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	74, 230
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	4 cut(s)	78, 94, 373, 800
AclI	AACGTT	1 cut(s)	653
AcoI	YGGCCR	2 cut(s)	3, 834
AcsI	RAATTY	4 cut(s)	114, 189, 359, 777
AfaI	GTAC	2 cut(s)	393, 731
AfiI	CCNNNNNNNGG	2 cut(s)	508, 957
AgsI	TTSAA	6 cut(s)	140, 252, 364, 682, 969, 1040
AjiI	CACGTC	3 cut(s)	270, 532, 706
AjnI	CCWGG	2 cut(s)	907, 950
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	3 cut(s)	146, 152, 921
AluI	AGCT	3 cut(s)	146, 152, 921
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	39, 712
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	6 cut(s)	3, 25, 834, 910, 974, 999
ApaI	GGGCCC	1 cut(s)	1003
ApeKI	GCWGC	2 cut(s)	575, 925
ApoI	RAATTY	4 cut(s)	114, 189, 359, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	7 cut(s)	430, 511, 630, 911, 975, 999, 1000
AsuHPI	GGTGA	3 cut(s)	58, 595, 703
AsuII	TTCGAA	2 cut(s)	157, 383
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	3 cut(s)	430, 511, 630
BaeGI	GKGCMC	3 cut(s)	275, 307, 1003
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	74, 230
BanII	GRGCYC	2 cut(s)	318, 1003
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	587, 912
BccI	CCATC	2 cut(s)	140, 688
BceAI	ACGGC	3 cut(s)	787, 821, 849
BciT130I	CCWGG	2 cut(s)	909, 952
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	2 cut(s)	39, 712
BfaI	CTAG	3 cut(s)	461, 503, 758
BfoI	RGCGCY	1 cut(s)	581
BisI	GCNGC	4 cut(s)	78, 576, 800, 926
BlsI	GCNGC	4 cut(s)	79, 577, 801, 927
Bme1390I	CCNGG	2 cut(s)	909, 952
Bme18I	GGWCC	3 cut(s)	430, 511, 630
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	3 cut(s)	270, 532, 706
BmgT120I	GGNCC	7 cut(s)	430, 511, 630, 911, 975, 999, 1000
BmiI	GGNNCC	5 cut(s)	76, 232, 854, 1001, 1002
BmrFI	CCNGG	2 cut(s)	909, 952
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	4 cut(s)	99, 111, 744, 913
BmuI	ACTGGG	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	2 cut(s)	105, 132
Bpu14I	TTCGAA	2 cut(s)	157, 383
BsaAI	YACGTR	2 cut(s)	395, 452
BsaJI	CCNNGG	5 cut(s)	70, 97, 318, 426, 950
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 957
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	909, 952
BseDI	CCNNGG	5 cut(s)	70, 97, 318, 426, 950
BseGI	GGATG	5 cut(s)	90, 172, 532, 759, 904
BseLI	CCNNNNNNNGG	2 cut(s)	508, 957
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	4 cut(s)	29, 32, 35, 761
BseSI	GKGCMC	3 cut(s)	275, 307, 1003
BseX3I	CGGCCG	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	587, 912
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	2 cut(s)	782, 964
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	6 cut(s)	5, 27, 836, 912, 976, 1001
BshNI	GGYRCC	2 cut(s)	74, 230
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	508, 957
BsmAI	GTCTC	2 cut(s)	39, 712
BsmFI	GGGAC	1 cut(s)	839
BsnI	GGCC	6 cut(s)	5, 27, 836, 912, 976, 1001
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	2 cut(s)	157, 383
Bsp120I	GGGCCC	1 cut(s)	999
Bsp1286I	GDGCHC	5 cut(s)	275, 307, 318, 327, 1003
Bsp143I	GATC	3 cut(s)	988, 1009, 1058
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	4 cut(s)	78, 94, 373, 800
BspANI	GGCC	6 cut(s)	5, 27, 836, 912, 976, 1001
BspLI	GGNNCC	5 cut(s)	76, 232, 854, 1001, 1002
BspT104I	TTCGAA	2 cut(s)	157, 383
BspT107I	GGYRCC	2 cut(s)	74, 230
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	5 cut(s)	70, 97, 318, 426, 950
BssMI	GATC	3 cut(s)	988, 1009, 1058
BssT1I	CCWWGG	3 cut(s)	70, 97, 426
Bst2UI	CCWGG	2 cut(s)	909, 952
Bst4CI	ACNGT	4 cut(s)	309, 985, 1019, 1066
Bst6I	CTCTTC	1 cut(s)	380
BstBAI	YACGTR	2 cut(s)	395, 452
BstBI	TTCGAA	2 cut(s)	157, 383
BstC8I	GCNNGC	4 cut(s)	176, 180, 923, 947
BstDEI	CTNAG	2 cut(s)	224, 735
BstDSI	CCRYGG	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	955
BstF5I	GGATG	5 cut(s)	90, 172, 532, 759, 904
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	3 cut(s)	991, 1012, 1061
BstMAI	GTCTC	2 cut(s)	39, 712
BstMBI	GATC	3 cut(s)	988, 1009, 1058
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 918
BstNI	CCWGG	2 cut(s)	909, 952
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	907, 950
BstSLI	GKGCMC	3 cut(s)	275, 307, 1003
BstV1I	GCAGC	2 cut(s)	587, 912
BstZI	CGGCCG	1 cut(s)	834
BsuRI	GGCC	6 cut(s)	5, 27, 836, 912, 976, 1001
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	181
BtrI	CACGTC	3 cut(s)	270, 532, 706
BtsCI	GGATG	5 cut(s)	90, 172, 532, 759, 904
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	4 cut(s)	176, 180, 923, 947
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	7 cut(s)	430, 511, 630, 911, 975, 999, 1000
Csp6I	GTAC	2 cut(s)	392, 730
CviAII	CATG	6 cut(s)	23, 71, 179, 235, 593, 860
CviQI	GTAC	2 cut(s)	392, 730
DdeI	CTNAG	2 cut(s)	224, 735
DpnI	GATC	3 cut(s)	990, 1011, 1060
DpnII	GATC	3 cut(s)	988, 1009, 1058
EaeI	YGGCCR	2 cut(s)	3, 834
EagI	CGGCCG	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	834
Eco130I	CCWWGG	3 cut(s)	70, 97, 426
Eco24I	GRGCYC	2 cut(s)	318, 1003
Eco47I	GGWCC	3 cut(s)	430, 511, 630
Eco52I	CGGCCG	1 cut(s)	834
Eco88I	CYCGRG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	955
EcoO109I	RGGNCCY	2 cut(s)	975, 1000
EcoRII	CCWGG	2 cut(s)	907, 950
EcoT14I	CCWWGG	3 cut(s)	70, 97, 426
EcoT38I	GRGCYC	2 cut(s)	318, 1003
ErhI	CCWWGG	3 cut(s)	70, 97, 426
FaeI	CATG	6 cut(s)	26, 74, 182, 238, 596, 863
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	6 cut(s)	22, 70, 178, 234, 592, 859
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	78, 576, 800, 926
FokI	GGATG	5 cut(s)	77, 179, 539, 766, 891
FriOI	GRGCYC	2 cut(s)	318, 1003
Fsp4HI	GCNGC	4 cut(s)	78, 576, 800, 926
FspBI	CTAG	3 cut(s)	461, 503, 758
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	4 cut(s)	78, 576, 800, 926
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	2 cut(s)	105, 132
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	6 cut(s)	5, 27, 836, 912, 976, 1001
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	6 cut(s)	26, 74, 182, 238, 596, 863
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	919
HinfI	GANTC	5 cut(s)	212, 380, 506, 620, 965
HphI	GGTGA	3 cut(s)	58, 595, 703
Hpy166II	GTNNAC	4 cut(s)	370, 553, 703, 732
Hpy188I	TCNGA	3 cut(s)	111, 511, 634
Hpy188III	TCNNGA	4 cut(s)	122, 140, 881, 969
Hpy8I	GTNNAC	4 cut(s)	370, 553, 703, 732
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	7 cut(s)	355, 541, 878, 934, 966, 1067, 1076
HpyCH4III	ACNGT	4 cut(s)	309, 985, 1019, 1066
HpyCH4IV	ACGT	8 cut(s)	269, 366, 394, 418, 451, 531, 653, 705
HpyCH4V	TGCA	9 cut(s)	182, 259, 449, 559, 596, 763, 904, 928, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 918
HpyF3I	CTNAG	2 cut(s)	224, 735
HpySE526I	ACGT	8 cut(s)	269, 366, 394, 418, 451, 531, 653, 705
Hsp92II	CATG	6 cut(s)	26, 74, 182, 238, 596, 863
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	3 cut(s)	988, 1009, 1058
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	587, 912
LweI	GCATC	4 cut(s)	99, 111, 744, 913
MaeI	CTAG	3 cut(s)	461, 503, 758
MaeII	ACGT	8 cut(s)	269, 366, 394, 418, 451, 531, 653, 705
MalI	GATC	3 cut(s)	990, 1011, 1060
MboI	GATC	3 cut(s)	988, 1009, 1058
MboII	GAAGA	3 cut(s)	43, 397, 1052
MhlI	GDGCHC	5 cut(s)	275, 307, 318, 327, 1003
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	114, 189, 217, 359, 777
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	206, 500
MmeI	TCCRAC	2 cut(s)	354, 657
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	3 cut(s)	200, 689, 933
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	909, 952
MvaI	CCWGG	2 cut(s)	909, 952
MwoI	GCNNNNNNNGC	2 cut(s)	322, 918
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	3 cut(s)	988, 1009, 1058
NlaIII	CATG	6 cut(s)	26, 74, 182, 238, 596, 863
NlaIV	GGNNCC	5 cut(s)	76, 232, 854, 1001, 1002
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	2 cut(s)	157, 383
OliI	CACNNNNGTG	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	182
PfeI	GAWTC	3 cut(s)	380, 620, 965
PkrI	GCNGC	4 cut(s)	79, 577, 801, 927
PleI	GAGTC	2 cut(s)	206, 500
PpsI	GAGTC	2 cut(s)	206, 500
Ppu21I	YACGTR	2 cut(s)	395, 452
Psp1406I	AACGTT	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	907, 950
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	2 cut(s)	907, 950
PspN4I	GGNNCC	5 cut(s)	76, 232, 854, 1001, 1002
PspOMI	GGGCCC	1 cut(s)	999
PspPI	GGNCC	7 cut(s)	430, 511, 630, 911, 975, 999, 1000
RsaI	GTAC	2 cut(s)	393, 731
RsaNI	GTAC	2 cut(s)	392, 730
RseI	CAYNNNNRTG	3 cut(s)	200, 689, 933
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	4 cut(s)	78, 576, 800, 926
Sau3AI	GATC	3 cut(s)	988, 1009, 1058
Sau96I	GGNCC	7 cut(s)	430, 511, 630, 911, 975, 999, 1000
SchI	GAGTC	2 cut(s)	206, 500
ScrFI	CCNGG	2 cut(s)	909, 952
SduI	GDGCHC	5 cut(s)	275, 307, 318, 327, 1003
SfaNI	GCATC	4 cut(s)	99, 111, 744, 913
SfuI	TTCGAA	2 cut(s)	157, 383
SinI	GGWCC	3 cut(s)	430, 511, 630
SmiMI	CAYNNNNRTG	3 cut(s)	200, 689, 933
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	5 cut(s)	114, 189, 217, 359, 777
SsiI	CCGC	4 cut(s)	78, 94, 373, 800
SspI	AATATT	2 cut(s)	587, 611
SspMI	CTAG	3 cut(s)	461, 503, 758
StyD4I	CCNGG	2 cut(s)	907, 950
StyI	CCWWGG	3 cut(s)	70, 97, 426
TaaI	ACNGT	4 cut(s)	309, 985, 1019, 1066
TaiI	ACGT	8 cut(s)	272, 369, 397, 421, 454, 534, 656, 708
TaqI	TCGA	9 cut(s)	14, 157, 266, 285, 312, 378, 383, 413, 882
TasI	AATT	5 cut(s)	114, 189, 217, 359, 777
TauI	GCSGC	2 cut(s)	80, 802
TfiI	GAWTC	3 cut(s)	380, 620, 965
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	2 cut(s)	575, 925
TspDTI	ATGAA	2 cut(s)	830, 1011
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	3 cut(s)	430, 511, 630
XagI	CCTNNNNNAGG	1 cut(s)	955
XapI	RAATTY	4 cut(s)	114, 189, 359, 777
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	3 cut(s)	461, 503, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.