Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005388

Physical Location & Seq

Genomic Coordinates Reverse (-)

1892964 .. 1895091

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCTCAAGGAGCCTCTCCTATACACAACTCCTAGGCCTCCTGTCCTTTATACTCCTCTTGGTCACAACCACCACTATGGCGGTTCGTGTTGGAGTCATTCTTCATAAGCCTTCTGCTCCAACTCTTCCTGTTTTCAGAGAAGCCCCGGCTTTTCGAAACGGTGATCAATGCGGGACTCGTGAGGCTGATCAGATTCATATCGCCATGACTCTCGACACAAACTACCTCCGTGGCACAATGGCTGCCGTTTTGTCTCTCCTTCAACATTCCACTTGCCCTGAAAACCTCTCTTTTCATTTCCTGTCCCTTCCTCATTTCGAAAACGACCTTTTCACCAGCATCAAATCAACCTTTCCTTACCTAAACTTCAAGATTTATCAGTTTGATCCAAACCTCGTCCGCAGCAAGATATCGAAATCCATCAGGCAAGCCCTTGATCAGCCTCTTAACTACGCAAGAATCTACCTCGCGGATATCATCCCTAGCAGCGTTGACAGGATCATCTACTTAGACTCAGACCTCGTTGTGGTAGACGACATAGAGAAGCTGTGGCATGTGGAGATGGAAGGTAAAGTGGTGGCTGCTCCCGAGTACTGCCACGCAAACTTCACCCATTATTTCACAAGAACTTTCTGGTCAGACCCGGTATTGGTCAAAGTTCTTGAAGGAAAACGTCCGTGTTATTTCAACACAGGGGTGATGGTTGTGGATGTAAACAAATGGAGGAAAGGAATGTATACACAGAAGGTAGAAGAGTGGATGACAATTCAGAAGCAGAAGAGGATATACCATTTGGGATCATTACCTCCGTTTCTGCTGATATTCGCCGGTGATATAAAAGCGGTTAATCATAGGTGGAACCAGCATGGTCTAGGAGGTGATAATTTCGAAGGAAGATGTAGAACGTTGCATCCGGGACCGATAAGTCTTCTTCACTGGAGTGGAAAAGGGAAGCCATGGTTAAGACTAGATTCAAGGAAGCCTTGTATCGTTGATCATCTATGGGCACCGTATGATCTGTACCGTTCATCAAGACATTCATTAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:0090406 GO:0120025 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

351

Amino Acids

40.34

Weight (kDa)

8.9

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	67 - 323	1.3e-56	Glycosyl transferase family 8
Glyco_transf_24	PF18404	107 - 248	3.1e-11	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06260
fragaria_vesca	FvH4_2g24130 FvH4_4g13990
malus_domestica	MD03G1271300.v1.1 MD11G1291900.v1.1 MD13G1178900.v1.1 MD16G1180100.v1.1
prunus_persica	Prupe.1G147700_v2.0.a1 Prupe.8G247500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419651 RchiOBHm_Chr6g0291941
rosa_laevigata	RLG00000007805 RLG00000012077
rosa_multiflora	Rmu_sc0003265.1_g000022 Rmu_sc0004991.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362490 Rroxscaffold_7G00175570
rosa_rugosa	Rorug04G0159400 Rorug06G0221900
rosa_samantha	Rh4AG220900 Rh4BG222800 Rh4CG234200 Rh4DG219800 Rh6AG335600 Rh6BG343000 Rh6CG349200 Rh6DG335900
rosa_wichuraiana	Rw4G019000 Rw6G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	927
AccB1I	GGYRCC	1 cut(s)	1009
AccI	GTMKAC	2 cut(s)	534, 740
AccII	CGCG	1 cut(s)	473
AciI	CCGC	5 cut(s)	83, 174, 403, 473, 845
AclI	AACGTT	1 cut(s)	908
AclWI	GGATC	3 cut(s)	383, 509, 808
AfaI	GTAC	2 cut(s)	596, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	529, 652
AgsI	TTSAA	5 cut(s)	266, 373, 668, 691, 978
AleI	CACNNNNGTG	2 cut(s)	698, 942
AloI	GAACNNNNNNTCC	2 cut(s)	898, 930
AluBI	AGCT	1 cut(s)	550
AluI	AGCT	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	383, 509, 808
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	3, 37
ApeKI	GCWGC	4 cut(s)	245, 405, 489, 584
AspA2I	CCTAGG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	3 cut(s)	149, 647, 918
AsuHPI	GGTGA	6 cut(s)	176, 328, 604, 712, 845, 893
AsuII	TTCGAA	3 cut(s)	157, 321, 891
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	920
AvrII	CCTAGG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	1012
BanI	GGYRCC	1 cut(s)	1009
BarI	GAAGNNNNNNTAC	2 cut(s)	773, 805
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	923
BbvI	GCAGC	4 cut(s)	232, 417, 501, 571
BccI	CCATC	3 cut(s)	431, 559, 697
BceAI	ACGGC	1 cut(s)	233
BclI	TGATCA	4 cut(s)	166, 190, 439, 997
BcnI	CCSGG	3 cut(s)	149, 647, 918
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	4 cut(s)	35, 486, 875, 971
BisI	GCNGC	4 cut(s)	246, 406, 490, 585
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	4 cut(s)	247, 407, 491, 586
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	3 cut(s)	149, 647, 918
Bme18I	GGWCC	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	4 cut(s)	14, 863, 921, 1011
BmrFI	CCNGG	3 cut(s)	149, 647, 918
BmsI	GCATC	2 cut(s)	351, 922
BpiI	GAAGAC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	961
Bpu14I	TTCGAA	3 cut(s)	157, 321, 891
BpuMI	CCSGG	3 cut(s)	149, 647, 918
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	34, 147, 232, 959
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 652
Bse118I	RCCGGY	1 cut(s)	830
Bse1I	ACTGG	1 cut(s)	944
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	4 cut(s)	34, 147, 232, 959
BseGI	GGATG	4 cut(s)	480, 718, 768, 913
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	529, 652
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	944
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	4 cut(s)	232, 417, 501, 571
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	5, 39
BshNI	GGYRCC	1 cut(s)	1009
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	4 cut(s)	149, 647, 831, 917
BslFI	GGGAC	3 cut(s)	190, 292, 933
BslI	CCNNNNNNNGG	2 cut(s)	529, 652
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	3 cut(s)	190, 292, 933
BsnI	GGCC	2 cut(s)	5, 39
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	3 cut(s)	157, 321, 891
Bsp1286I	GDGCHC	1 cut(s)	1012
Bsp143I	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
Bsp19I	CCATGG	1 cut(s)	959
BspACI	CCGC	5 cut(s)	83, 174, 403, 473, 845
BspANI	GGCC	2 cut(s)	5, 39
BspCNI	CTCAG	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	4 cut(s)	14, 863, 921, 1011
BspPI	GGATC	3 cut(s)	383, 509, 808
BspT104I	TTCGAA	3 cut(s)	157, 321, 891
BspT107I	GGYRCC	1 cut(s)	1009
BsrFI	RCCGGY	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	944
BssAI	RCCGGY	1 cut(s)	830
BssECI	CCNNGG	4 cut(s)	34, 147, 232, 959
BssMI	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
BssNAI	GTATAC	1 cut(s)	741
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	34, 959
Bst1107I	GTATAC	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	164, 1014, 1028
Bst6I	CTCTTC	4 cut(s)	132, 750, 776, 1044
BstBI	TTCGAA	3 cut(s)	157, 321, 891
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	511, 517
BstDSI	CCRYGG	2 cut(s)	232, 959
BstF5I	GGATG	4 cut(s)	480, 718, 768, 913
BstFNI	CGCG	1 cut(s)	473
BstKTI	GATC	8 cut(s)	169, 193, 391, 442, 504, 803, 1000, 1021
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	147, 645, 916
BstSLI	GKGCMC	1 cut(s)	1012
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	232, 417, 501, 571
BstV2I	GAAGAC	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	5, 39
BtgI	CCRYGG	2 cut(s)	232, 959
BtsCI	GGATG	4 cut(s)	480, 718, 768, 913
BtsIMutI	CAGTG	1 cut(s)	937
Cac8I	GCNNGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	830
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	2 cut(s)	595, 1024
CviAII	CATG	4 cut(s)	208, 557, 869, 960
CviQI	GTAC	2 cut(s)	595, 1024
DdeI	CTNAG	2 cut(s)	511, 517
DpnI	GATC	8 cut(s)	168, 192, 390, 441, 503, 802, 999, 1020
DpnII	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
DrdI	GACNNNNNNGTC	1 cut(s)	927
DseDI	GACNNNNNNGTC	1 cut(s)	927
Eam1104I	CTCTTC	4 cut(s)	132, 750, 776, 1044
EarI	CTCTTC	4 cut(s)	132, 750, 776, 1044
Eco130I	CCWWGG	2 cut(s)	34, 959
Eco147I	AGGCCT	1 cut(s)	39
Eco32I	GATATC	2 cut(s)	414, 478
Eco47I	GGWCC	1 cut(s)	920
Eco88I	CYCGRG	1 cut(s)	590
EcoRV	GATATC	2 cut(s)	414, 478
EcoT14I	CCWWGG	2 cut(s)	34, 959
ErhI	CCWWGG	2 cut(s)	34, 959
FaeI	CATG	4 cut(s)	211, 560, 872, 963
FalI	AAGNNNNNCTT	2 cut(s)	970, 1002
FaqI	GGGAC	3 cut(s)	190, 292, 933
FatI	CATG	4 cut(s)	207, 556, 868, 959
FauI	CCCGC	1 cut(s)	167
FbaI	TGATCA	4 cut(s)	166, 190, 439, 997
FblI	GTMKAC	2 cut(s)	534, 740
Fnu4HI	GCNGC	4 cut(s)	246, 406, 490, 585
FokI	GGATG	4 cut(s)	467, 725, 775, 900
Fsp4HI	GCNGC	4 cut(s)	246, 406, 490, 585
FspBI	CTAG	4 cut(s)	35, 486, 875, 971
GluI	GCNGC	4 cut(s)	246, 406, 490, 585
GsuI	CTGGAG	1 cut(s)	961
HaeIII	GGCC	2 cut(s)	5, 39
HapII	CCGG	4 cut(s)	149, 647, 831, 917
Hin1II	CATG	4 cut(s)	211, 560, 872, 963
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	7 cut(s)	96, 178, 196, 211, 462, 515, 974
HpaII	CCGG	4 cut(s)	149, 647, 831, 917
HphI	GGTGA	6 cut(s)	176, 328, 604, 712, 845, 893
Hpy166II	GTNNAC	4 cut(s)	496, 535, 718, 741
Hpy188I	TCNGA	5 cut(s)	140, 195, 520, 643, 774
Hpy188III	TCNNGA	6 cut(s)	182, 215, 373, 590, 665, 1035
Hpy8I	GTNNAC	4 cut(s)	496, 535, 718, 741
HpyAV	CCTTC	7 cut(s)	123, 272, 320, 563, 662, 742, 887
HpyCH4III	ACNGT	3 cut(s)	164, 1014, 1028
HpyCH4IV	ACGT	2 cut(s)	676, 908
HpyCH4V	TGCA	1 cut(s)	913
HpyF3I	CTNAG	2 cut(s)	511, 517
HpySE526I	ACGT	2 cut(s)	676, 908
Hsp92II	CATG	4 cut(s)	211, 560, 872, 963
Ksp22I	TGATCA	4 cut(s)	166, 190, 439, 997
Kzo9I	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
LmnI	GCTCC	3 cut(s)	12, 124, 592
Lsp1109I	GCAGC	4 cut(s)	232, 417, 501, 571
LweI	GCATC	2 cut(s)	351, 922
MaeI	CTAG	4 cut(s)	35, 486, 875, 971
MaeII	ACGT	2 cut(s)	676, 908
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	8 cut(s)	168, 192, 390, 441, 503, 802, 999, 1020
MboI	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
MboII	GAAGA	7 cut(s)	95, 119, 767, 793, 909, 923, 926
MhlI	GDGCHC	1 cut(s)	1012
MluCI	AATT	2 cut(s)	768, 886
MlyI	GAGTC	4 cut(s)	105, 172, 205, 509
MmeI	TCCRAC	2 cut(s)	73, 146
MseI	TTAA	3 cut(s)	450, 849, 965
MslI	CAYNNNNRTG	3 cut(s)	77, 698, 942
MspI	CCGG	4 cut(s)	149, 647, 831, 917
MspR9I	CCNGG	3 cut(s)	149, 647, 918
MvnI	CGCG	1 cut(s)	473
NciI	CCSGG	3 cut(s)	149, 647, 918
NcoI	CCATGG	1 cut(s)	959
NdeII	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
NlaIII	CATG	4 cut(s)	211, 560, 872, 963
NlaIV	GGNNCC	4 cut(s)	14, 863, 921, 1011
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	560
NspV	TTCGAA	3 cut(s)	157, 321, 891
OliI	CACNNNNGTG	2 cut(s)	698, 942
PceI	AGGCCT	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	196, 462, 974
PfoI	TCCNGGA	1 cut(s)	916
PkrI	GCNGC	4 cut(s)	247, 407, 491, 586
PleI	GAGTC	4 cut(s)	104, 172, 205, 509
PpsI	GAGTC	4 cut(s)	104, 172, 205, 509
Psp1406I	AACGTT	1 cut(s)	908
PspN4I	GGNNCC	4 cut(s)	14, 863, 921, 1011
PspPI	GGNCC	1 cut(s)	920
RsaI	GTAC	2 cut(s)	596, 1025
RsaNI	GTAC	2 cut(s)	595, 1024
RseI	CAYNNNNRTG	3 cut(s)	77, 698, 942
SaqAI	TTAA	3 cut(s)	450, 849, 965
SatI	GCNGC	4 cut(s)	246, 406, 490, 585
Sau3AI	GATC	8 cut(s)	166, 190, 388, 439, 501, 800, 997, 1018
Sau96I	GGNCC	1 cut(s)	920
ScaI	AGTACT	1 cut(s)	596
SchI	GAGTC	4 cut(s)	105, 172, 205, 509
ScrFI	CCNGG	3 cut(s)	149, 647, 918
SduI	GDGCHC	1 cut(s)	1012
SfaNI	GCATC	2 cut(s)	351, 922
SfuI	TTCGAA	3 cut(s)	157, 321, 891
SgrAI	CRCCGGYG	1 cut(s)	830
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	3 cut(s)	77, 698, 942
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	768, 886
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	5 cut(s)	83, 174, 403, 473, 845
SspMI	CTAG	4 cut(s)	35, 486, 875, 971
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	147, 645, 916
StyI	CCWWGG	2 cut(s)	34, 959
TaaI	ACNGT	3 cut(s)	164, 1014, 1028
TaiI	ACGT	2 cut(s)	679, 911
TaqI	TCGA	5 cut(s)	157, 216, 321, 416, 891
TaqII	GACCGA	1 cut(s)	937
TasI	AATT	2 cut(s)	768, 886
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	3 cut(s)	196, 462, 974
Tru1I	TTAA	3 cut(s)	450, 849, 965
Tru9I	TTAA	3 cut(s)	450, 849, 965
TscAI	CASTG	1 cut(s)	944
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	4 cut(s)	245, 405, 489, 584
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	5 cut(s)	95, 188, 287, 1020, 1032
TspGWI	ACGGA	3 cut(s)	221, 669, 801
TspRI	CASTG	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	920
XceI	RCATGY	1 cut(s)	560
XmaJI	CCTAGG	1 cut(s)	34
XmiI	GTMKAC	2 cut(s)	534, 740
XspI	CTAG	4 cut(s)	35, 486, 875, 971
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.