Rorug04G0159400

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005388
Physical Location & Seq
Reverse (-)
27788486 .. 27793108
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0159400.1

Sequence Viewer

Length: 1275 bp
ATGATGGCTCTCCGACTGAGAACCAACCACCACCGAACCCTCACAAACCCATCATCTCTCATCCACCTCTTCTCCACTTCCTCCTCAGACCCATCCGACTCAACAGACCCAACTGAACCCAATCCCCAGTCCGACTCTTCCTCTCTCTCCAACTACTTCAGCGATGTCAAAGCCAGCCTCAGGCAACAGCAACAGCAACAACACAGGAGCAGCAGACCCACTTCTCAGAACAACAACCCTTCTCTCTCCCACCCTTCCAAGACCGCCTCCTTGGACGAAATCCGCAACAAGCTTGCGGAGTTTCGGCTTCGATCCATTGGGCCAAACCCCACTGCACCTCCACCTCCACCTCCACCTCCGAACCCCATTTCGTTTGAGAAGCTCTATAACAAAGACGTGAGCAGCCGCAAGATGGAGTTTCAGACGATTCGGGAGAGTCTGAAGCTTATAAAGCCCAATGCCGATGAGCAGAATGAGAGGAAGGGTGAGGGTTTGCCGAAGTTGAGGTTTCCGAAAAGTTTGGATATGAATCCCAGCCAGGATGCGGGTGTTAGGAAGGGACCACTTCCGAGTTCCTTTTACAAGGAGAAGGAGAGAAGCGGAGACAAGAGCTCGGATGCATTGAGGACCGAATTTGTGAAGATTTATAGCTATAAAGAGTTGGGGGAGAAGCTGAGCAAGTTGAGGCCAGAGGAGGGGAAGGAGTTTACATTGGGGGAGTTGAGTGAGAGGTTGGTCAAGTTGAGGATGATGGAAGAGAATGAGTCTGAGTCTCGGGTTGGGGGAGTGTATGTGGACTTCAAGCACAGCTTGGAGATCTTGAAGATATCTCAAGAAGAGGAGAAGAATAGGAAAAATTTGAGGCAGAGGCTTCGTATCATAGATATAGGTCAAACTCCTGAGTATATGATGAAACCCCCAAAGGAAGGCTTGGTTGAGAAGTATTTCCATCCAGATAACATGTCTTCTGCAGAAAAGCTGAAAATTGAGCTTGGCAAAGTTAGAGATGAATTTAAAATGTCAGAGTCAGATTGTGGTTCTGCACGAGTTCAAGTGGCACAACTCACAACTAAGATCAAACATCTATCTTCAGTTTTACACAAAAAGGATAAGCATTCACTTAAGGGTCTTCAAGCAATGGTGCAGAGGAGAAAGAAGCTATTAAAGTATCTTCGAAGAACTGACTGGGACTCTTACTGCCTTGTTCTCTCCAAACTTGGTCTCCGGGACACGCCAGATGTCAAACAGGAGTACAAGAAACATTACAAGAATTAA

Protein Analysis

424

Amino Acids

48.73

Weight (kDa)

9.63

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S15 PF00312 334 - 409 1.7e-23 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AciI CCGC 6 cut(s) 264, 283, 296, 406, 545, 600
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 3 cut(s) 632, 856, 1010
AcuI CTGAAG 3 cut(s) 142, 461, 1074
AfaI GTAC 1 cut(s) 1253
AfiI CCNNNNNNNGG 5 cut(s) 180, 412, 544, 695, 926
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 1 cut(s) 960
AgsI TTSAA 4 cut(s) 802, 823, 1052, 1133
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 537
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 3 cut(s) 597, 777, 1226
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 2 cut(s) 320, 686
ApeKI GCWGC 2 cut(s) 210, 402
ApoI RAATTY 3 cut(s) 632, 856, 1010
Asp700I GAANNNNTTC 1 cut(s) 944
AspS9I GGNCC 3 cut(s) 320, 560, 627
AsuC2I CCSGG 1 cut(s) 1226
AsuHPI GGTGA 1 cut(s) 497
AsuII TTCGAA 1 cut(s) 1174
AvaI CYCGRG 1 cut(s) 774
AvaII GGWCC 2 cut(s) 560, 627
AxyI CCTNAGG 1 cut(s) 179
BanII GRGCYC 1 cut(s) 614
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
BauI CACGAG 1 cut(s) 1044
BbsI GAAGAC 2 cut(s) 957, 1121
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 2 cut(s) 222, 414
BccI CCATC 5 cut(s) 58, 100, 406, 745, 957
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 1 cut(s) 539
BcnI CCSGG 1 cut(s) 1226
BcoDI GTCTC 3 cut(s) 597, 777, 1226
BfmI CTRYAG 1 cut(s) 969
BfrI CTTAAG 1 cut(s) 1121
BglII AGATCT 1 cut(s) 816
BisI GCNGC 3 cut(s) 211, 403, 406
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 3 cut(s) 212, 404, 407
Bme1390I CCNGG 2 cut(s) 539, 1226
Bme18I GGWCC 2 cut(s) 560, 627
BmeT110I CYCGRG 1 cut(s) 774
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 320, 560, 627
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 2 cut(s) 539, 1226
BmrI ACTGGG 2 cut(s) 121, 1195
BmsI GCATC 2 cut(s) 532, 607
BmuI ACTGGG 2 cut(s) 121, 1195
BpiI GAAGAC 2 cut(s) 957, 1121
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 1174
BpuEI CTTGAG 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 1226
BsaBI GATNNNNATC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 8 cut(s) 56, 86, 322, 352, 777, 807, 1206, 1236
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 412, 544, 695, 926
Bse1I ACTGG 2 cut(s) 127, 1190
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 6 cut(s) 60, 92, 547, 622, 753, 949
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 5 cut(s) 180, 412, 544, 695, 926
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 7 cut(s) 8, 99, 193, 239, 665, 759, 891
BseNI ACTGG 2 cut(s) 127, 1190
BseRI GAGGAG 4 cut(s) 73, 707, 854, 1162
BseXI GCAGC 2 cut(s) 222, 414
BseYI CCCAGC 1 cut(s) 533
BsgI GTGCAG 3 cut(s) 318, 1026, 1163
BshFI GGCC 2 cut(s) 322, 688
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 1 cut(s) 1225
BslFI GGGAC 3 cut(s) 573, 1202, 1241
BslI CCNNNNNNNGG 5 cut(s) 180, 412, 544, 695, 926
BsmAI GTCTC 3 cut(s) 597, 777, 1226
BsmFI GGGAC 3 cut(s) 573, 1202, 1241
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 322, 688
Bso31I GGTCTC 1 cut(s) 1226
BsoBI CYCGRG 1 cut(s) 774
Bsp119I TTCGAA 1 cut(s) 1174
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 3 cut(s) 311, 816, 1074
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 6 cut(s) 264, 283, 296, 406, 545, 600
BspANI GGCC 2 cut(s) 322, 688
BspCNI CTCAG 7 cut(s) 9, 98, 192, 238, 666, 760, 892
BspLI GGNNCC 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 1174
BspTI CTTAAG 1 cut(s) 1121
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 1 cut(s) 1143
BsrI ACTGG 2 cut(s) 127, 1190
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 3 cut(s) 311, 816, 1074
BssSI CACGAG 1 cut(s) 1044
BssT1I CCWWGG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 1044
Bst2UI CCWGG 1 cut(s) 539
Bst6I CTCTTC 4 cut(s) 74, 142, 750, 831
BstAFI CTTAAG 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 1174
BstC8I GCNNGC 2 cut(s) 175, 294
BstDEI CTNAG 8 cut(s) 17, 85, 179, 225, 674, 768, 900, 1071
BstF5I GGATG 6 cut(s) 60, 92, 547, 622, 753, 949
BstKTI GATC 3 cut(s) 314, 819, 1077
BstMAI GTCTC 3 cut(s) 597, 777, 1226
BstMBI GATC 3 cut(s) 311, 816, 1074
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 2 cut(s) 537, 1224
BstSFI CTRYAG 1 cut(s) 969
BstV1I GCAGC 2 cut(s) 222, 414
BstV2I GAAGAC 2 cut(s) 957, 1121
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 322, 688
BtgZI GCGATG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 6 cut(s) 60, 92, 547, 622, 753, 949
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 175, 294
Cfr13I GGNCC 3 cut(s) 320, 560, 627
Csp6I GTAC 1 cut(s) 1252
CviAII CATG 1 cut(s) 961
CviQI GTAC 1 cut(s) 1252
DdeI CTNAG 8 cut(s) 17, 85, 179, 225, 674, 768, 900, 1071
DpnI GATC 3 cut(s) 313, 818, 1076
DpnII GATC 3 cut(s) 311, 816, 1074
DraI TTTAAA 1 cut(s) 1015
Eam1104I CTCTTC 4 cut(s) 74, 142, 750, 831
EarI CTCTTC 4 cut(s) 74, 142, 750, 831
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 1226
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 2 cut(s) 560, 627
Eco53kI GAGCTC 1 cut(s) 612
Eco57I CTGAAG 3 cut(s) 142, 461, 1074
Eco81I CCTNAGG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 537
EcoRV GATATC 1 cut(s) 828
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 964
FalI AAGNNNNNCTT 4 cut(s) 794, 826, 914, 946
FaqI GGGAC 3 cut(s) 573, 1202, 1241
FatI CATG 1 cut(s) 960
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 211, 403, 406
FokI GGATG 6 cut(s) 47, 79, 554, 629, 760, 936
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 3 cut(s) 211, 403, 406
GluI GCNGC 3 cut(s) 211, 403, 406
GsaI CCCAGC 1 cut(s) 537
HaeIII GGCC 2 cut(s) 322, 688
HapII CCGG 1 cut(s) 1225
Hin1II CATG 1 cut(s) 964
HindIII AAGCTT 2 cut(s) 290, 443
HinfI GANTC 9 cut(s) 98, 134, 427, 436, 529, 764, 770, 1025, 1190
HpaII CCGG 1 cut(s) 1225
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 708, 796
Hpy188III TCNNGA 5 cut(s) 431, 820, 833, 899, 953
Hpy8I GTNNAC 2 cut(s) 708, 796
HpyAV CCTTC 7 cut(s) 249, 264, 475, 550, 583, 694, 920
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 5 cut(s) 335, 620, 971, 1043, 1144
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 8 cut(s) 17, 85, 179, 225, 674, 768, 900, 1071
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 964
Kzo9I GATC 3 cut(s) 311, 816, 1074
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 222, 414
LweI GCATC 2 cut(s) 532, 607
MaeII ACGT 1 cut(s) 396
MalI GATC 3 cut(s) 313, 818, 1076
MboI GATC 3 cut(s) 311, 816, 1074
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 5 cut(s) 632, 856, 984, 1010, 1270
MlyI GAGTC 7 cut(s) 92, 128, 445, 773, 779, 1034, 1184
MmeI TCCRAC 4 cut(s) 37, 120, 156, 174
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 944
MseI TTAA 4 cut(s) 1014, 1122, 1163, 1273
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 1 cut(s) 1225
MspR9I CCNGG 2 cut(s) 539, 1226
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 451
NciI CCSGG 1 cut(s) 1226
NdeII GATC 3 cut(s) 311, 816, 1074
NlaIII CATG 1 cut(s) 964
NlaIV GGNNCC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 964
NspV TTCGAA 1 cut(s) 1174
PciI ACATGT 1 cut(s) 960
PctI GAATGC 1 cut(s) 1114
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 2 cut(s) 427, 529
PfoI TCCNGGA 1 cut(s) 1224
PkrI GCNGC 3 cut(s) 212, 404, 407
PleI GAGTC 7 cut(s) 92, 128, 444, 772, 778, 1033, 1184
PpsI GAGTC 7 cut(s) 92, 128, 444, 772, 778, 1033, 1184
PscI ACATGT 1 cut(s) 960
PsiI TTATAA 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 3 cut(s) 320, 560, 627
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 816
RsaI GTAC 1 cut(s) 1253
RsaNI GTAC 1 cut(s) 1252
SacI GAGCTC 1 cut(s) 614
SaqAI TTAA 4 cut(s) 1014, 1122, 1163, 1273
SatI GCNGC 3 cut(s) 211, 403, 406
Sau3AI GATC 3 cut(s) 311, 816, 1074
Sau96I GGNCC 3 cut(s) 320, 560, 627
SchI GAGTC 7 cut(s) 92, 128, 445, 773, 779, 1034, 1184
ScrFI CCNGG 2 cut(s) 539, 1226
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 2 cut(s) 532, 607
SfcI CTRYAG 1 cut(s) 969
SfuI TTCGAA 1 cut(s) 1174
SinI GGWCC 2 cut(s) 560, 627
SmlI CTYRAG 2 cut(s) 831, 1121
SmoI CTYRAG 2 cut(s) 831, 1121
Sse9I AATT 5 cut(s) 632, 856, 984, 1010, 1270
SsiI CCGC 6 cut(s) 264, 283, 296, 406, 545, 600
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 537, 1224
StyI CCWWGG 1 cut(s) 270
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 310, 1174
TaqII GACCGA 1 cut(s) 644
TasI AATT 5 cut(s) 632, 856, 984, 1010, 1270
TatI WGTACW 1 cut(s) 1251
TauI GCSGC 1 cut(s) 408
TfiI GAWTC 2 cut(s) 427, 529
Tru1I TTAA 4 cut(s) 1014, 1122, 1163, 1273
Tru9I TTAA 4 cut(s) 1014, 1122, 1163, 1273
TscAI CASTG 1 cut(s) 337
TseI GCWGC 2 cut(s) 210, 402
TspDTI ATGAA 3 cut(s) 542, 926, 1023
TspRI CASTG 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 560, 627
XapI RAATTY 3 cut(s) 632, 856, 1010
XceI RCATGY 1 cut(s) 964
XmnI GAANNNNTTC 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.