Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Forward (+)

898480 .. 899794

Gene Structure 1315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTCAGCATCAGCGACAGCTACTCTTCTCAAACCCAATCTTCCGCCGCATAAACCGACCATCATCGCCTCCTCCGTATCTCCGCCTCTTCCTCCTCCACGTCGCAACCACCTCCTCCGCCGCGATTTCCTCTCCCTGGCGGCAACATCCACGCTTCTAACACAATCGATTCAGTTTCTAGCTCCGGCGCCGGTCTCCGCCGCTGAAGATGAAGAGTATATCAAAGATACGTCGGCAGTGATCAGTAAAGTAAGGAGTACGCTTTCGATGCAGAAGACAGATCCGAATGTGGCTGATGCGGTGGCGGAGCTGAGAGAAGCGTCGAATTCTTGGGTTGCCAAGTACCGGAAAGAGAAAGCTCTTCTCGGAAAAGCTTCTTTCCGGGATATATACTCGGCGTTGAATGCTGTTTCAGGTCATTATGTGAGTTTTGGTCCGACGGCTCCGATTCCGGCGAAGAGGAAGGCGAGGATTCTTGAAGAGATGGAAACTGCTGAGAAAGCTCTCACAAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

174

Amino Acids

18.83

Weight (kDa)

9.88

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	41 - 170	1.4e-35	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	126
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	2 cut(s)	262, 347
AfiI	CCNNNNNNNGG	2 cut(s)	139, 348
AgsI	TTSAA	2 cut(s)	406, 482
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	6 cut(s)	23, 185, 313, 362, 377, 506
AluI	AGCT	6 cut(s)	23, 185, 313, 362, 377, 506
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	2 cut(s)	71, 481
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	4 cut(s)	50, 124, 144, 204
BlsI	GCNGC	4 cut(s)	51, 125, 145, 205
Bme1390I	CCNGG	2 cut(s)	140, 386
Bme18I	GGWCC	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	192, 447
BmrFI	CCNGG	2 cut(s)	140, 386
BmsI	GCATC	3 cut(s)	20, 261, 289
BpiI	GAAGAC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 348
Bse118I	RCCGGY	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	139, 348
BseMII	CTCAG	2 cut(s)	305, 489
BseRI	GAGGAG	3 cut(s)	64, 87, 107
Bsh1236I	CGCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	170
BsiSI	CCGG	5 cut(s)	188, 194, 349, 385, 455
BslI	CCNNNNNNNGG	2 cut(s)	139, 348
BsmAI	GTCTC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	243, 283
BspCNI	CTCAG	2 cut(s)	306, 490
BspDI	ATCGAT	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	192, 447
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	243, 283
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	140
Bst6I	CTCTTC	6 cut(s)	33, 96, 210, 369, 455, 477
BstACI	GRCGYC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	314, 498
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	246, 286
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	243, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 407, 503
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	138, 384
BstUI	CGCG	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	170
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	261, 346
CviJI	RGCY	9 cut(s)	5, 23, 185, 296, 313, 362, 377, 446, 506
CviKI_1	RGCY	9 cut(s)	5, 23, 185, 296, 313, 362, 377, 446, 506
CviQI	GTAC	2 cut(s)	261, 346
DdeI	CTNAG	2 cut(s)	314, 498
DinI	GGCGCC	1 cut(s)	192
DpnI	GATC	2 cut(s)	245, 285
DpnII	GATC	2 cut(s)	243, 283
Eam1104I	CTCTTC	6 cut(s)	33, 96, 210, 369, 455, 477
EarI	CTCTTC	6 cut(s)	33, 96, 210, 369, 455, 477
EciI	GGCGGA	5 cut(s)	36, 75, 110, 190, 323
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
FaiI	YATR	5 cut(s)	54, 222, 392, 394, 426
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	50, 124, 144, 204
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	50, 124, 144, 204
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	50, 124, 144, 204
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	5 cut(s)	188, 194, 349, 385, 455
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	3 cut(s)	172, 451, 475
HpaII	CCGG	5 cut(s)	188, 194, 349, 385, 455
Hpy188I	TCNGA	4 cut(s)	288, 371, 441, 450
Hpy188III	TCNNGA	1 cut(s)	479
Hpy99I	CGWCG	4 cut(s)	108, 238, 328, 445
HpyAV	CCTTC	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	103, 233
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 407, 503
HpyF3I	CTNAG	2 cut(s)	314, 498
HpySE526I	ACGT	2 cut(s)	103, 233
Hsp92I	GRCGYC	1 cut(s)	191
HspAI	GCGC	1 cut(s)	191
KasI	GGCGCC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	243, 283
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	190, 310, 451
LpnPI	CCDG	8 cut(s)	125, 152, 201, 207, 362, 398, 402, 468
LweI	GCATC	3 cut(s)	20, 261, 289
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	103, 233
MalI	GATC	2 cut(s)	245, 285
MboI	GATC	2 cut(s)	243, 283
MboII	GAAGA	9 cut(s)	20, 35, 83, 221, 227, 289, 356, 472, 494
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	328
Mly113I	GGCGCC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	5 cut(s)	188, 194, 349, 385, 455
MspR9I	CCNGG	2 cut(s)	140, 386
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	271, 407, 503
NarI	GGCGCC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	243, 283
NlaIV	GGNNCC	2 cut(s)	192, 447
NmeAIII	GCCGAG	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	172, 451, 475
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	51, 125, 145, 205
PluTI	GGCGCC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	192, 447
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	262, 347
RsaNI	GTAC	2 cut(s)	261, 346
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	4 cut(s)	50, 124, 144, 204
Sau3AI	GATC	2 cut(s)	243, 283
Sau96I	GGNCC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	140, 386
SfaNI	GCATC	3 cut(s)	20, 261, 289
SfoI	GGCGCC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	328
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	138, 384
TaiI	ACGT	2 cut(s)	106, 236
TaqI	TCGA	3 cut(s)	170, 269, 326
TasI	AATT	1 cut(s)	328
TauI	GCSGC	4 cut(s)	52, 126, 146, 206
TfiI	GAWTC	3 cut(s)	172, 451, 475
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.