Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Forward (+)

34598687 .. 34599716

Gene Structure 1030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCTCACCAACACTCCTAACTCCCACCTCTAAACTCAAATCACTCGTTCCCATCAAGGCCACCAAAACCACCACCTCCACCGCAGCCTCCACTACCTCAGTCTCACAAGCTCGGCGCCGCGAGTTCTTATCAATCGCCGCAGCAACTCTCTCGTCGCCTGCATGGCTCTTCCCATCAACACCAGCAGCCCTTGCTGCTTCGGATGAAGAGTACGTTAAAGAGACCGAGGAGGTGATCCAGAAGGTTAAGAGCACCATCAACATGGACAAGAACGACCCCAATGTGGCCAACGCAGTTGCGGAGCTCAGAGAAACGTCGAACACGTGGGTTGCTAAGTACAGGAGGGAGAAGAGTCTGCTGGCAAGGGTTTCTTTCAGAGACATGTACTCGGCGATCAATGCCGTTTCGGGACACTATGTTAGTTTCGGGCCAACGGCTCCGATTCCGGCGAAGAGAAAGGCGAGGATCTTGGAAGAGGTCGAAACTGCAGAGAAAAACCTATTAAGGGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

173

Amino Acids

18.79

Weight (kDa)

9.84

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	38 - 168	6.4e-34	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	117
AccII	CGCG	1 cut(s)	123
AciI	CCGC	4 cut(s)	84, 121, 141, 302
AclWI	GGATC	2 cut(s)	232, 476
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	118
AfaI	GTAC	3 cut(s)	215, 341, 389
AfiI	CCNNNNNNNGG	2 cut(s)	286, 508
AflIII	ACRYGT	2 cut(s)	324, 384
AluBI	AGCT	2 cut(s)	113, 307
AluI	AGCT	2 cut(s)	113, 307
Alw21I	GWGCWC	2 cut(s)	257, 309
Alw26I	GTCTC	3 cut(s)	109, 218, 375
AlwI	GGATC	2 cut(s)	232, 476
AoxI	GGCC	4 cut(s)	3, 60, 288, 431
ApeKI	GCWGC	4 cut(s)	86, 143, 188, 197
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	257, 309
BbvI	GCAGC	4 cut(s)	98, 155, 184, 200
BccI	CCATC	3 cut(s)	62, 184, 266
BceAI	ACGGC	2 cut(s)	389, 453
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcoDI	GTCTC	3 cut(s)	109, 218, 375
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	6 cut(s)	87, 121, 141, 144, 189, 198
BlsI	GCNGC	6 cut(s)	88, 122, 142, 145, 190, 199
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	119, 441
BsaAI	YACGTR	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 508
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	286, 508
BseMII	CTCAG	2 cut(s)	114, 322
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	98, 155, 184, 200
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	5, 62, 290, 433
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	257, 309
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	286, 508
BsmAI	GTCTC	3 cut(s)	109, 218, 375
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	4 cut(s)	5, 62, 290, 433
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	257, 309
Bsp143I	GATC	3 cut(s)	237, 396, 468
BspACI	CCGC	4 cut(s)	84, 121, 141, 302
BspANI	GGCC	4 cut(s)	5, 62, 290, 433
BspCNI	CTCAG	2 cut(s)	113, 321
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	119, 441
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	232, 476
BspQI	GCTCTTC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	237, 396, 468
BssNI	GRCGYC	1 cut(s)	118
Bst6I	CTCTTC	5 cut(s)	176, 204, 347, 449, 471
BstACI	GRCGYC	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	162, 363
BstDEI	CTNAG	3 cut(s)	100, 308, 336
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	240, 399, 471
BstMAI	GTCTC	3 cut(s)	109, 218, 375
BstMBI	GATC	3 cut(s)	237, 396, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 194, 197, 401
BstNSI	RCATGY	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	98, 155, 184, 200
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	5, 62, 290, 433
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	162, 363
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	214, 340, 388
CviAII	CATG	3 cut(s)	165, 265, 385
CviQI	GTAC	3 cut(s)	214, 340, 388
DdeI	CTNAG	3 cut(s)	100, 308, 336
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	3 cut(s)	239, 398, 470
DpnII	GATC	3 cut(s)	237, 396, 468
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	5 cut(s)	176, 204, 347, 449, 471
EarI	CTCTTC	5 cut(s)	176, 204, 347, 449, 471
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
FaeI	CATG	3 cut(s)	168, 268, 388
FaiI	YATR	4 cut(s)	166, 266, 386, 420
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	3 cut(s)	164, 264, 384
Fnu4HI	GCNGC	6 cut(s)	87, 121, 141, 144, 189, 198
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	87, 121, 141, 144, 189, 198
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	6 cut(s)	87, 121, 141, 144, 189, 198
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	5, 62, 290, 433
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	168, 268, 388
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	355, 445
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	205, 311, 380, 444
Hpy188III	TCNNGA	2 cut(s)	241, 411
Hpy99I	CGWCG	2 cut(s)	160, 322
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	3 cut(s)	216, 317, 326
HpyCH4V	TGCA	2 cut(s)	164, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 194, 197, 401
HpyF3I	CTNAG	3 cut(s)	100, 308, 336
HpySE526I	ACGT	3 cut(s)	216, 317, 326
Hsp92I	GRCGYC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	168, 268, 388
HspAI	GCGC	1 cut(s)	118
KasI	GGCGCC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	237, 396, 468
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	304, 445
LpnPI	CCDG	6 cut(s)	174, 198, 254, 328, 347, 462
Lsp1109I	GCAGC	4 cut(s)	98, 155, 184, 200
MaeII	ACGT	3 cut(s)	216, 317, 326
MalI	GATC	3 cut(s)	239, 398, 470
MboI	GATC	3 cut(s)	237, 396, 468
MboII	GAAGA	5 cut(s)	163, 221, 364, 466, 488
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	2 cut(s)	257, 309
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	364
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	3 cut(s)	219, 249, 506
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	166, 194, 197, 401
NarI	GGCGCC	1 cut(s)	118
NdeII	GATC	3 cut(s)	237, 396, 468
NlaIII	CATG	3 cut(s)	168, 268, 388
NlaIV	GGNNCC	2 cut(s)	119, 441
NmeAIII	GCCGAG	2 cut(s)	94, 371
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	88, 122, 142, 145, 190, 199
PleI	GAGTC	1 cut(s)	363
PluTI	GGCGCC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	327
PmlI	CACGTG	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	327
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	119, 441
PspPI	GGNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	3 cut(s)	215, 341, 389
RsaNI	GTAC	3 cut(s)	214, 340, 388
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	219, 249, 506
SatI	GCNGC	6 cut(s)	87, 121, 141, 144, 189, 198
Sau3AI	GATC	3 cut(s)	237, 396, 468
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	257, 309
SfcI	CTRYAG	1 cut(s)	489
SfoI	GGCGCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	263
SsiI	CCGC	4 cut(s)	84, 121, 141, 302
SspDI	GGCGCC	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	309
TaiI	ACGT	3 cut(s)	219, 320, 329
TaqI	TCGA	2 cut(s)	320, 483
TaqII	GACCGA	1 cut(s)	242
TatI	WGTACW	2 cut(s)	339, 387
TauI	GCSGC	2 cut(s)	123, 143
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	219, 249, 506
Tru9I	TTAA	3 cut(s)	219, 249, 506
TseI	GCWGC	4 cut(s)	86, 143, 188, 197
TspDTI	ATGAA	1 cut(s)	222
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.