Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004020.1

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Reverse (-)

43823 .. 44350

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004020.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcctcaccaacactcctaactcccacctctaaactcaaatcactcgttcccatcaaggccaccaaaaccaccacctccatcgccaccgccactgcctccacaacctcagtcccacaagctcgccgccgtgaattcttatctatcgcggcggcgactctctcgtcgccagcatggctcttcccactaacaccagcagccctcgctgcttcggacgaagagtacgttaaagagaccgaggaggtgatccagaaggtcaagagcaccatcagcatggacaagaacgaccccaatgtggccaccgcagttgccgagctcagagaaacgtctaactcgtgggtggcgaagtacaggagggagaaaaatctgctggctagggtttcattcagagacatgtactcggcgatcaatgccgtttcgggacactatgttagtttcgggccaacggctccgattccggccaagagaaaggcgaggatcttggaagaggtcgaaactgcagagaaaaacctattaaggggtagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

175

Amino Acids

19.08

Weight (kDa)

9.84

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AccII	CGCG	1 cut(s)	149
AciI	CCGC	5 cut(s)	90, 127, 149, 152, 303
AclWI	GGATC	2 cut(s)	241, 485
AcoI	YGGCCR	2 cut(s)	297, 459
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	3 cut(s)	224, 350, 398
AfiI	CCNNNNNNNGG	2 cut(s)	295, 517
AflIII	ACRYGT	1 cut(s)	393
AluBI	AGCT	2 cut(s)	122, 316
AluI	AGCT	2 cut(s)	122, 316
Alw21I	GWGCWC	2 cut(s)	266, 318
Alw26I	GTCTC	2 cut(s)	227, 384
AlwI	GGATC	2 cut(s)	241, 485
AoxI	GGCC	5 cut(s)	3, 60, 297, 440, 459
ApeKI	GCWGC	2 cut(s)	197, 206
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	266, 318
BbvI	GCAGC	2 cut(s)	193, 209
BccI	CCATC	3 cut(s)	62, 89, 275
BceAI	ACGGC	3 cut(s)	114, 398, 462
BcoDI	GTCTC	2 cut(s)	227, 384
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	498
BglI	GCCNNNNNGGC	1 cut(s)	175
BisI	GCNGC	5 cut(s)	127, 150, 153, 198, 207
BlsI	GCNGC	5 cut(s)	128, 151, 154, 199, 208
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 517
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	295, 517
BseMII	CTCAG	2 cut(s)	123, 331
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	193, 209
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	5 cut(s)	5, 62, 299, 442, 461
BsiHKAI	GWGCWC	2 cut(s)	266, 318
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	98, 435
BslI	CCNNNNNNNGG	2 cut(s)	295, 517
BsmAI	GTCTC	2 cut(s)	227, 384
BsmFI	GGGAC	2 cut(s)	98, 435
BsnI	GGCC	5 cut(s)	5, 62, 299, 442, 461
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	266, 318
Bsp143I	GATC	3 cut(s)	246, 405, 477
BspACI	CCGC	5 cut(s)	90, 127, 149, 152, 303
BspANI	GGCC	5 cut(s)	5, 62, 299, 442, 461
BspCNI	CTCAG	2 cut(s)	122, 330
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	241, 485
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	3 cut(s)	246, 405, 477
BssSI	CACGAG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	334
Bst6I	CTCTTC	3 cut(s)	185, 213, 480
BstC8I	GCNNGC	3 cut(s)	124, 171, 372
BstDEI	CTNAG	2 cut(s)	109, 317
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	249, 408, 480
BstMAI	GTCTC	2 cut(s)	227, 384
BstMBI	GATC	3 cut(s)	246, 405, 477
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 203, 206, 270, 410
BstNSI	RCATGY	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	193, 209
BstX2I	RGATCY	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	5 cut(s)	5, 62, 299, 442, 461
BtgZI	GCGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	124, 171, 372
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	223, 349, 397
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	3 cut(s)	174, 274, 394
CviQI	GTAC	3 cut(s)	223, 349, 397
DdeI	CTNAG	2 cut(s)	109, 317
DpnI	GATC	3 cut(s)	248, 407, 479
DpnII	GATC	3 cut(s)	246, 405, 477
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	297, 459
Eam1104I	CTCTTC	3 cut(s)	185, 213, 480
EarI	CTCTTC	3 cut(s)	185, 213, 480
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	3 cut(s)	177, 277, 397
FaiI	YATR	4 cut(s)	175, 275, 395, 429
FaqI	GGGAC	2 cut(s)	98, 435
FatI	CATG	3 cut(s)	173, 273, 393
Fnu4HI	GCNGC	5 cut(s)	127, 150, 153, 198, 207
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	127, 150, 153, 198, 207
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	5 cut(s)	127, 150, 153, 198, 207
HaeIII	GGCC	5 cut(s)	5, 62, 299, 442, 461
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	3 cut(s)	177, 277, 397
HinfI	GANTC	2 cut(s)	157, 454
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	214, 320, 389, 453
Hpy188III	TCNNGA	3 cut(s)	250, 259, 420
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	225, 326
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 203, 206, 270, 410
HpyF3I	CTNAG	2 cut(s)	109, 317
HpySE526I	ACGT	2 cut(s)	225, 326
Hsp92II	CATG	3 cut(s)	177, 277, 397
Kzo9I	GATC	3 cut(s)	246, 405, 477
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	183, 207, 263, 337, 356, 471
Lsp1109I	GCAGC	2 cut(s)	193, 209
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	2 cut(s)	225, 326
MalI	GATC	3 cut(s)	248, 407, 479
MboI	GATC	3 cut(s)	246, 405, 477
MboII	GAAGA	3 cut(s)	172, 230, 497
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	266, 318
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	151
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	2 cut(s)	228, 515
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	175, 203, 206, 270, 410
NdeII	GATC	3 cut(s)	246, 405, 477
NlaIII	CATG	3 cut(s)	177, 277, 397
NlaIV	GGNNCC	1 cut(s)	450
NmeAIII	GCCGAG	2 cut(s)	337, 380
NspI	RCATGY	1 cut(s)	397
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 332, 341
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	128, 151, 154, 199, 208
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PscI	ACATGT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	3 cut(s)	224, 350, 398
RsaNI	GTAC	3 cut(s)	223, 349, 397
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	228, 515
SatI	GCNGC	5 cut(s)	127, 150, 153, 198, 207
Sau3AI	GATC	3 cut(s)	246, 405, 477
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	266, 318
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	5 cut(s)	90, 127, 149, 152, 303
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	318
TaiI	ACGT	2 cut(s)	228, 329
TaqI	TCGA	1 cut(s)	492
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	134
TatI	WGTACW	2 cut(s)	348, 396
TauI	GCSGC	3 cut(s)	129, 152, 155
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	228, 515
Tru9I	TTAA	2 cut(s)	228, 515
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	197, 206
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.