Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Reverse (-)

10053765 .. 10059853

Gene Structure 6089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGCGGGCCGAGCTTTATTGTAAATCAAAAGATCCAATCCCGTCTATATAAAGCGGGCCTTGATAAGGTGATAAGCTCACGTGGCAGAAACCCAGTTACTGCTCTACACCCTATACTCCTTAGTCCTTACAAACACTCTCTCTCGCCTCCCCAATCCTCTCCCAACCAAGCCATGGCCTCACCAACACTCCTAACTCCCACCTCTAAACTCAAATCACTCGTTCCCATCAAGGCCACCAAAACCACCAGCTCCACCGCCACTGCCTCCACAACCTCAGTCCCACAAGCTCGCCGCCGTGAATTCTTATCTATCGCGGCGGCGACTCTCTCGTTGCCAGCATGGTTCTTCCCACTAACACCAGCAGCCCTCGCTGCTTCGGACGAAGAGTACGTTAAAGAGACCGAGGAGGTGATCCAGAAGGTCAAGAGCACCATCAGCATGGACAAGAACGACCCCAATGTGGCCACCGCAGTTGCCGAGCTCAGAGAAACGTCTAACTCGTGGGTGGCTAAGTACAGGAGGGAGAAAAATCTGCTGGCTAGGGTTTCATTTAGAGACATGTACTCGGCGATCAATGCAGTTTCCGGACACTATGTTAGTTTCGGGCCAACGGCTCCGATTCCGGCGAAGAGAAAGGCGAGGATCTTGGAAGAGGTCGAAACTGCAGAGAAAAACCTATTAAGGGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

231

Amino Acids

25.21

Weight (kDa)

10.1

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	87 - 227	3.9e-33	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	1 cut(s)	317
AccIII	TCCGGA	1 cut(s)	587
AciI	CCGC	7 cut(s)	6, 56, 258, 295, 317, 320, 471
AclWI	GGATC	3 cut(s)	28, 409, 653
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	302
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	392, 518, 566
AfiI	CCNNNNNNNGG	4 cut(s)	67, 175, 463, 685
AflIII	ACRYGT	1 cut(s)	561
AluBI	AGCT	5 cut(s)	15, 78, 252, 290, 484
AluI	AGCT	5 cut(s)	15, 78, 252, 290, 484
Alw21I	GWGCWC	2 cut(s)	434, 486
Alw26I	GTCTC	2 cut(s)	395, 552
AlwI	GGATC	3 cut(s)	28, 409, 653
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	587
AoxI	GGCC	6 cut(s)	8, 58, 177, 234, 465, 608
ApeKI	GCWGC	2 cut(s)	365, 374
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	8, 58, 608
AsuHPI	GGTGA	3 cut(s)	82, 174, 424
BalI	TGGCCA	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	502
BbrPI	CACGTG	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	434, 486
BbvI	GCAGC	2 cut(s)	361, 377
BccI	CCATC	2 cut(s)	236, 443
BceAI	ACGGC	2 cut(s)	282, 630
BcoDI	GTCTC	2 cut(s)	395, 552
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	666
BisI	GCNGC	5 cut(s)	295, 318, 321, 366, 375
BlsI	GCNGC	5 cut(s)	296, 319, 322, 367, 376
BmgT120I	GGNCC	3 cut(s)	8, 58, 608
BmiI	GGNNCC	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	174, 405
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 175, 463, 685
Bse1I	ACTGG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	174, 405
BseLI	CCNNNNNNNGG	4 cut(s)	67, 175, 463, 685
BseMII	CTCAG	2 cut(s)	291, 499
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	361, 377
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	6 cut(s)	10, 60, 179, 236, 467, 610
BsiHKAI	GWGCWC	2 cut(s)	434, 486
BsiSI	CCGG	2 cut(s)	588, 626
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	4 cut(s)	67, 175, 463, 685
BsmAI	GTCTC	2 cut(s)	395, 552
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	6 cut(s)	10, 60, 179, 236, 467, 610
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	434, 486
Bsp13I	TCCGGA	1 cut(s)	587
Bsp143I	GATC	4 cut(s)	33, 414, 573, 645
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	7 cut(s)	6, 56, 258, 295, 317, 320, 471
BspANI	GGCC	6 cut(s)	10, 60, 179, 236, 467, 610
BspCNI	CTCAG	2 cut(s)	290, 498
BspEI	TCCGGA	1 cut(s)	587
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	670
BspPI	GGATC	3 cut(s)	28, 409, 653
BspTNI	GGTCTC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	174, 405
BssMI	GATC	4 cut(s)	33, 414, 573, 645
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	502
Bst6I	CTCTTC	3 cut(s)	381, 626, 648
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	5 cut(s)	8, 58, 292, 339, 540
BstDEI	CTNAG	4 cut(s)	122, 277, 485, 513
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	4 cut(s)	36, 417, 576, 648
BstMAI	GTCTC	2 cut(s)	395, 552
BstMBI	GATC	4 cut(s)	33, 414, 573, 645
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 84, 371, 374, 438, 578
BstNSI	RCATGY	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	361, 377
BstX2I	RGATCY	2 cut(s)	33, 645
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	33, 645
BsuRI	GGCC	6 cut(s)	10, 60, 179, 236, 467, 610
BtgI	CCRYGG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	5 cut(s)	8, 58, 292, 339, 540
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	8, 58, 608
Csp6I	GTAC	3 cut(s)	391, 517, 565
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	4 cut(s)	175, 342, 442, 562
CviQI	GTAC	3 cut(s)	391, 517, 565
DdeI	CTNAG	4 cut(s)	122, 277, 485, 513
DpnI	GATC	4 cut(s)	35, 416, 575, 647
DpnII	GATC	4 cut(s)	33, 414, 573, 645
EaeI	YGGCCR	1 cut(s)	465
Eam1104I	CTCTTC	3 cut(s)	381, 626, 648
EarI	CTCTTC	3 cut(s)	381, 626, 648
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	484
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	178, 345, 445, 565
FaiI	YATR	8 cut(s)	49, 51, 116, 176, 343, 443, 563, 597
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	174, 341, 441, 561
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	5 cut(s)	295, 318, 321, 366, 375
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	5 cut(s)	295, 318, 321, 366, 375
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	5 cut(s)	295, 318, 321, 366, 375
HaeIII	GGCC	6 cut(s)	10, 60, 179, 236, 467, 610
HapII	CCGG	2 cut(s)	588, 626
Hin1II	CATG	4 cut(s)	178, 345, 445, 565
HinfI	GANTC	2 cut(s)	325, 622
HpaII	CCGG	2 cut(s)	588, 626
HphI	GGTGA	3 cut(s)	82, 174, 424
Hpy188I	TCNGA	3 cut(s)	382, 488, 621
Hpy188III	TCNNGA	3 cut(s)	418, 427, 588
HpyAV	CCTTC	1 cut(s)	415
HpyCH4IV	ACGT	3 cut(s)	82, 393, 494
HpyCH4V	TGCA	2 cut(s)	581, 668
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 84, 371, 374, 438, 578
HpyF3I	CTNAG	4 cut(s)	122, 277, 485, 513
HpySE526I	ACGT	3 cut(s)	82, 393, 494
Hsp92II	CATG	4 cut(s)	178, 345, 445, 565
Kpn2I	TCCGGA	1 cut(s)	587
Kzo9I	GATC	4 cut(s)	33, 414, 573, 645
LmnI	GCTCC	2 cut(s)	257, 622
LpnPI	CCDG	9 cut(s)	108, 262, 351, 375, 431, 505, 524, 601, 639
Lsp1109I	GCAGC	2 cut(s)	361, 377
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	3 cut(s)	82, 393, 494
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	35, 416, 575, 647
MboI	GATC	4 cut(s)	33, 414, 573, 645
MboII	GAAGA	4 cut(s)	340, 398, 643, 665
MflI	RGATCY	2 cut(s)	33, 645
MhlI	GDGCHC	2 cut(s)	434, 486
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	319
Mox20I	TGGCCA	1 cut(s)	467
MroI	TCCGGA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	2 cut(s)	396, 683
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	467
MspI	CCGG	2 cut(s)	588, 626
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	12, 84, 371, 374, 438, 578
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	33, 414, 573, 645
NlaIII	CATG	4 cut(s)	178, 345, 445, 565
NlaIV	GGNNCC	1 cut(s)	618
NmeAIII	GCCGAG	3 cut(s)	36, 505, 548
NspI	RCATGY	1 cut(s)	565
PciI	ACATGT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 500
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	296, 319, 322, 367, 376
PleI	GAGTC	1 cut(s)	319
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	8, 58, 608
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	33, 645
RsaI	GTAC	3 cut(s)	392, 518, 566
RsaNI	GTAC	3 cut(s)	391, 517, 565
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	396, 683
SatI	GCNGC	5 cut(s)	295, 318, 321, 366, 375
Sau3AI	GATC	4 cut(s)	33, 414, 573, 645
Sau96I	GGNCC	3 cut(s)	8, 58, 608
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	434, 486
SfcI	CTRYAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	7 cut(s)	6, 56, 258, 295, 317, 320, 471
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	3 cut(s)	85, 396, 497
TaqI	TCGA	1 cut(s)	660
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	1 cut(s)	302
TatI	WGTACW	2 cut(s)	516, 564
TauI	GCSGC	3 cut(s)	297, 320, 323
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	2 cut(s)	396, 683
Tru9I	TTAA	2 cut(s)	396, 683
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	2 cut(s)	365, 374
TspDTI	ATGAA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.