Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Reverse (-)

6613021 .. 6613542

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1090500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCTCACCAACACTCCTAACTCCTACCTCTAAACTCAAATCTCTTCCTCCAATCAAGTCCACCAAATCCACTACCATCACCACAACCACAATCCCACAACCTCGACGCCGCGAATTCTTATCGTTCGTGGCGACAGCAGCAGTAGCAACTCTGTCCTCGCCAGCATGGCTCTTCCCGCTCACACCAGCAGCATGTGCCGCTTCGGACGAGGAGTACGTAAAAGAAACGGAGGAGATTATCAACAAGGTCAGAACGACCATTAACATGGATAGAAACGACCCCAATGTGGCTTCTGCCGTGGCGGAGCTGAGAGAAACATCAAACTCATGGGTGGCCAAGTACAGGAGGGAGAAGACTCTGCTCAGTAGGGTTTCTTTTAGAGACATTTACTCAGCAATCAATGCGGTTTCAGGGCATTATGTTAGTTTTGGACCGACAGCTCCGCTTCCGGCGAAGAGAAAGGCTAGGATTTTAGAAGAGGTGGAAACTGCAGAGAAGGCATTGTTAAGGGGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

174

Amino Acids

19.06

Weight (kDa)

9.83

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	37 - 169	5.3e-35	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	112, 179, 201, 305, 407, 446
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	2 cut(s)	218, 344
AfiI	CCNNNNNNNGG	2 cut(s)	289, 345
AluBI	AGCT	2 cut(s)	310, 443
AluI	AGCT	2 cut(s)	310, 443
Alw26I	GTCTC	1 cut(s)	378
AoxI	GGCC	2 cut(s)	3, 336
ApeKI	GCWGC	2 cut(s)	140, 191
ApoI	RAATTY	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	152, 203
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	492
BglI	GCCNNNNNGGC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	112, 141, 192, 201
BlsI	GCNGC	4 cut(s)	113, 142, 193, 202
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BpiI	GAAGAC	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 345
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	289, 345
BseMII	CTCAG	3 cut(s)	302, 379, 408
BseRI	GAGGAG	2 cut(s)	227, 248
BseXI	GCAGC	2 cut(s)	152, 203
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	5, 338
BsiSI	CCGG	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	289, 345
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	5, 338
BspACI	CCGC	6 cut(s)	112, 179, 201, 305, 407, 446
BspANI	GGCC	2 cut(s)	5, 338
BspCNI	CTCAG	3 cut(s)	303, 378, 407
BspFNI	CGCG	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	496
BspQI	GCTCTTC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	109
Bst6I	CTCTTC	4 cut(s)	51, 179, 452, 474
BstACI	GRCGYC	1 cut(s)	109
BstAPI	GCANNNNNTGC	2 cut(s)	197, 404
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	311, 365, 394
BstDSI	CCRYGG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 146, 169, 178, 197, 200, 404, 500
BstNSI	RCATGY	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	492
BstSNI	TACGTA	1 cut(s)	220
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	152, 203
BstV2I	GAAGAC	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	5, 338
BtgI	CCRYGG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	217, 343
CviAII	CATG	4 cut(s)	168, 195, 268, 330
CviJI	RGCY	7 cut(s)	5, 172, 293, 310, 338, 443, 467
CviKI_1	RGCY	7 cut(s)	5, 172, 293, 310, 338, 443, 467
CviQI	GTAC	2 cut(s)	217, 343
DdeI	CTNAG	3 cut(s)	311, 365, 394
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	4 cut(s)	51, 179, 452, 474
EarI	CTCTTC	4 cut(s)	51, 179, 452, 474
EciI	GGCGGA	1 cut(s)	320
Eco105I	TACGTA	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	116
FaeI	CATG	4 cut(s)	171, 198, 271, 333
FaiI	YATR	5 cut(s)	169, 196, 269, 331, 423
FatI	CATG	4 cut(s)	167, 194, 267, 329
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	112, 141, 192, 201
Fsp4HI	GCNGC	4 cut(s)	112, 141, 192, 201
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	4 cut(s)	112, 141, 192, 201
HaeIII	GGCC	2 cut(s)	5, 338
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	171, 198, 271, 333
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	208, 254
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 146, 169, 178, 197, 200, 404, 500
HpyF3I	CTNAG	3 cut(s)	311, 365, 394
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	171, 198, 271, 333
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	307, 448
LpnPI	CCDG	5 cut(s)	177, 201, 331, 399, 465
Lsp1109I	GCAGC	2 cut(s)	152, 203
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	219
MbiI	CCGCTC	1 cut(s)	181
MboII	GAAGA	5 cut(s)	38, 166, 367, 469, 491
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	9 cut(s)	16, 40, 60, 114, 169, 205, 226, 342, 475
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	264, 509
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	1 cut(s)	452
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	8 cut(s)	140, 146, 169, 178, 197, 200, 404, 500
NlaIII	CATG	4 cut(s)	171, 198, 271, 333
NspI	RCATGY	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 216
PkrI	GCNGC	4 cut(s)	113, 142, 193, 202
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	218, 344
RsaNI	GTAC	2 cut(s)	217, 343
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	264, 509
SatI	GCNGC	4 cut(s)	112, 141, 192, 201
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	352
SetI	ASST	7 cut(s)	32, 106, 222, 252, 312, 445, 486
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	266
SnaBI	TACGTA	1 cut(s)	220
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	6 cut(s)	112, 179, 201, 305, 407, 446
SspMI	CTAG	1 cut(s)	468
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	106
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	2 cut(s)	114, 203
Tru1I	TTAA	2 cut(s)	264, 509
Tru9I	TTAA	2 cut(s)	264, 509
TseI	GCWGC	2 cut(s)	140, 191
TspGWI	ACGGA	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	198
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.