Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Forward (+)

23046834 .. 23048058

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G235100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCTCAACCACGCTCCTAACTCCCACCTCTAAACTCAAATCCCTCCCTCCAATCAAGGCCACCAAACCCACCACCACAACCACAATTCCACAACCCCGCCGCCGCGAATTCTTATCTTTCGCGGCTGCGGCGGCAGCAACTCTGTCGTCACCAGCATGGCTTTTCCCACTGACACCATCCGCATTTGCGGCTTCTGACGAAGAGTACGTTAAGGAAACAGAGGAGGTGATCAGCAAGGTGAGAAACACCATTAACATGGACAGGAATGATCCCAATGTGGCTTCTGCTGTGGCTGAGCTCAGAGAGACATCAAATTCTTGGGTGGCTAAGTACAGGCGGGAGAAGACTCTGCTTAGCAGGGCCTCTTTCAGAGACATGTATTCGGCAATCAATGCAGTGTCAGGGCATTATGTTAGTTTTGGACCAACAGCTCCACTTCCGGCAAAGAGAAAGGCGAGGATTTTGGAAGAGGTGGAAACTGCAGAGAAGGCCTTATTAAGAGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

9.93

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccII	CGCG	2 cut(s)	108, 125
AciI	CCGC	9 cut(s)	100, 103, 106, 125, 131, 134, 183, 191, 340
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	110, 316
AfaI	GTAC	2 cut(s)	209, 335
AflIII	ACRYGT	1 cut(s)	378
AluBI	AGCT	2 cut(s)	301, 434
AluI	AGCT	2 cut(s)	301, 434
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	302, 369
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	4 cut(s)	3, 60, 363, 492
ApeKI	GCWGC	2 cut(s)	128, 137
ApoI	RAATTY	2 cut(s)	110, 316
AspS9I	GGNCC	2 cut(s)	363, 425
AsuHPI	GGTGA	3 cut(s)	144, 241, 253
AvaII	GGWCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	115, 149
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	302, 369
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	8 cut(s)	103, 106, 126, 129, 132, 135, 138, 192
BlpI	GCTNAGC	2 cut(s)	297, 356
BlsI	GCNGC	8 cut(s)	104, 107, 127, 130, 133, 136, 139, 193
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	363, 425
BpiI	GAAGAC	1 cut(s)	353
Bpu1102I	GCTNAGC	2 cut(s)	297, 356
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	288, 316
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	115, 149
Bsh1236I	CGCG	2 cut(s)	108, 125
BshFI	GGCC	4 cut(s)	5, 62, 365, 494
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	302, 369
BsnI	GGCC	4 cut(s)	5, 62, 365, 494
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	231, 271
Bsp1720I	GCTNAGC	2 cut(s)	297, 356
BspACI	CCGC	9 cut(s)	100, 103, 106, 125, 131, 134, 183, 191, 340
BspANI	GGCC	4 cut(s)	5, 62, 365, 494
BspCNI	CTCAG	2 cut(s)	289, 315
BspFNI	CGCG	2 cut(s)	108, 125
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	266
BssMI	GATC	2 cut(s)	231, 271
Bst6I	CTCTTC	2 cut(s)	198, 465
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	297, 302, 330, 356
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	2 cut(s)	108, 125
BstKTI	GATC	2 cut(s)	234, 274
BstMAI	GTCTC	2 cut(s)	302, 369
BstMBI	GATC	2 cut(s)	231, 271
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 134, 137, 191, 395, 491
BstNSI	RCATGY	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	108, 125
BstV1I	GCAGC	2 cut(s)	115, 149
BstV2I	GAAGAC	1 cut(s)	353
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	5, 62, 365, 494
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	170, 405
BveI	ACCTGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	363, 425
Csp6I	GTAC	2 cut(s)	208, 334
CviAII	CATG	3 cut(s)	159, 259, 379
CviQI	GTAC	2 cut(s)	208, 334
DdeI	CTNAG	4 cut(s)	297, 302, 330, 356
DpnI	GATC	2 cut(s)	233, 273
DpnII	GATC	2 cut(s)	231, 271
Eam1104I	CTCTTC	2 cut(s)	198, 465
EarI	CTCTTC	2 cut(s)	198, 465
Ecl136II	GAGCTC	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	494
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	162, 262, 382
FaiI	YATR	4 cut(s)	160, 260, 380, 414
FatI	CATG	3 cut(s)	158, 258, 378
FauI	CCCGC	2 cut(s)	107, 333
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	8 cut(s)	103, 106, 126, 129, 132, 135, 138, 192
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	8 cut(s)	103, 106, 126, 129, 132, 135, 138, 192
GluI	GCNGC	8 cut(s)	103, 106, 126, 129, 132, 135, 138, 192
HaeIII	GGCC	4 cut(s)	5, 62, 365, 494
HapII	CCGG	1 cut(s)	443
Hin1II	CATG	3 cut(s)	162, 262, 382
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	3 cut(s)	144, 241, 253
Hpy188I	TCNGA	3 cut(s)	199, 305, 374
HpyAV	CCTTC	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	398, 485
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 134, 137, 191, 395, 491
HpyF3I	CTNAG	4 cut(s)	297, 302, 330, 356
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	162, 262, 382
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	231, 271
LmnI	GCTCC	2 cut(s)	21, 439
LpnPI	CCDG	7 cut(s)	168, 250, 322, 346, 390, 456, 493
Lsp1109I	GCAGC	2 cut(s)	115, 149
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	233, 273
MboI	GATC	2 cut(s)	231, 271
MboII	GAAGA	3 cut(s)	215, 358, 482
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	3 cut(s)	87, 110, 316
MlyI	GAGTC	1 cut(s)	343
MseI	TTAA	3 cut(s)	213, 255, 500
MslI	CAYNNNNRTG	2 cut(s)	157, 257
MspI	CCGG	1 cut(s)	443
MvnI	CGCG	2 cut(s)	108, 125
MwoI	GCNNNNNNNGC	6 cut(s)	131, 134, 137, 191, 395, 491
NdeII	GATC	2 cut(s)	231, 271
NlaIII	CATG	3 cut(s)	162, 262, 382
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	494
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PkrI	GCNGC	8 cut(s)	104, 107, 127, 130, 133, 136, 139, 193
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	363, 425
PstI	CTGCAG	1 cut(s)	487
RsaI	GTAC	2 cut(s)	209, 335
RsaNI	GTAC	2 cut(s)	208, 334
RseI	CAYNNNNRTG	2 cut(s)	157, 257
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	213, 255, 500
SatI	GCNGC	8 cut(s)	103, 106, 126, 129, 132, 135, 138, 192
Sau3AI	GATC	2 cut(s)	231, 271
Sau96I	GGNCC	2 cut(s)	363, 425
SchI	GAGTC	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	8 cut(s)	32, 213, 231, 243, 303, 436, 477, 512
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	157, 257
Sse9I	AATT	3 cut(s)	87, 110, 316
SseBI	AGGCCT	1 cut(s)	494
SsiI	CCGC	9 cut(s)	100, 103, 106, 125, 131, 134, 183, 191, 340
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	213
TasI	AATT	3 cut(s)	87, 110, 316
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	6 cut(s)	105, 108, 128, 134, 137, 194
Tru1I	TTAA	3 cut(s)	213, 255, 500
Tru9I	TTAA	3 cut(s)	213, 255, 500
TscAI	CASTG	2 cut(s)	177, 405
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	128, 137
Tsp45I	GTSAC	1 cut(s)	150
TspRI	CASTG	2 cut(s)	177, 405
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	110, 316
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.