Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Reverse (-)

6598529 .. 6599044

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1079700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCTCACCAACACTCCTAACTCCCACCTCTAAACTCAAATCTCTTCCACCAATCAAGTCCACCAAATCCACCGCCACCGCCACAATCCCACAACCTCGACGCCGCGAATTCTTATCGTTCGTGGCGGCAGCAGCTGCAGCAACTCTGTCCTCGCCAGCATGGCTCTTCCCGCTCACACCAGCTGCATTTGCCGCTTCGGACGAGGAGTACGTAAAAGAAACGGAGGAGGTGATAAACAAGGTCAAAACCACCATTAACATGGATAGGAACGACCCCAATGTGGCTTCTGCAGTGGCGGAGCTCAGAGAAACATCAAACTCATGGGTGGCCAAGTACAGGAGGGAGAAGACTCTGCTCGGTAGGGTTTCTTTTAGGGACATTTACTCCGCAATCAATGCAGTTTCAGGGCATTATGTCAGTTTTGGACCGACTGCTCCGCTTCCTGCAAAGAGAAAGGCGAGGATTTTGGAAGAGGTGGAAACTGCAGAGAAGGCATTGTTGAGGGGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

172

Amino Acids

18.7

Weight (kDa)

9.88

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	35 - 167	3.1e-35	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	175
AccII	CGCG	1 cut(s)	108
AciI	CCGC	9 cut(s)	75, 81, 106, 128, 173, 195, 299, 390, 440
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	2 cut(s)	212, 338
AfiI	CCNNNNNNNGG	2 cut(s)	283, 339
AluBI	AGCT	3 cut(s)	137, 185, 304
AluI	AGCT	3 cut(s)	137, 185, 304
Alw21I	GWGCWC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	3, 330
ApeKI	GCWGC	5 cut(s)	131, 134, 137, 140, 185
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	5 cut(s)	124, 143, 146, 152, 172
BfmI	CTRYAG	3 cut(s)	138, 291, 486
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	8 cut(s)	106, 129, 132, 135, 138, 141, 186, 195
BlsI	GCNGC	8 cut(s)	107, 130, 133, 136, 139, 142, 187, 196
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	103
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 339
BseLI	CCNNNNNNNGG	2 cut(s)	283, 339
BseMII	CTCAG	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	221, 242
BseXI	GCAGC	5 cut(s)	124, 143, 146, 152, 172
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	5, 332
BsiHKAI	GWGCWC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	283, 339
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	5, 332
Bsp1286I	GDGCHC	1 cut(s)	306
BspACI	CCGC	9 cut(s)	75, 81, 106, 128, 173, 195, 299, 390, 440
BspANI	GGCC	2 cut(s)	5, 332
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	108
BspMAI	CTGCAG	3 cut(s)	142, 295, 490
BspQI	GCTCTTC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	103
Bst6I	CTCTTC	3 cut(s)	51, 173, 468
BstACI	GRCGYC	1 cut(s)	103
BstAPI	GCANNNNNTGC	2 cut(s)	137, 398
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	9 cut(s)	134, 137, 140, 163, 172, 191, 194, 398, 494
BstSFI	CTRYAG	3 cut(s)	138, 291, 486
BstSNI	TACGTA	1 cut(s)	214
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	5 cut(s)	124, 143, 146, 152, 172
BstV2I	GAAGAC	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	5, 332
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	211, 337
CviAII	CATG	3 cut(s)	162, 262, 324
CviJI	RGCY	7 cut(s)	5, 137, 166, 185, 287, 304, 332
CviKI_1	RGCY	7 cut(s)	5, 137, 166, 185, 287, 304, 332
CviQI	GTAC	2 cut(s)	211, 337
DdeI	CTNAG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	51, 173, 468
EarI	CTCTTC	3 cut(s)	51, 173, 468
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	304
Eco105I	TACGTA	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	3 cut(s)	165, 265, 327
FaiI	YATR	4 cut(s)	163, 263, 325, 417
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	161, 261, 323
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	8 cut(s)	106, 129, 132, 135, 138, 141, 186, 195
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	8 cut(s)	106, 129, 132, 135, 138, 141, 186, 195
GluI	GCNGC	8 cut(s)	106, 129, 132, 135, 138, 141, 186, 195
HaeIII	GGCC	2 cut(s)	5, 332
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	165, 265, 327
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	202, 308
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	6 cut(s)	140, 188, 293, 401, 449, 488
HpyF10VI	GCNNNNNNNGC	9 cut(s)	134, 137, 140, 163, 172, 191, 194, 398, 494
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	165, 265, 327
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	301, 442
LpnPI	CCDG	5 cut(s)	171, 195, 325, 393, 459
Lsp1109I	GCAGC	5 cut(s)	124, 143, 146, 152, 172
MaeII	ACGT	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	175
MboII	GAAGA	4 cut(s)	38, 160, 361, 485
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	346
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	137, 185
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	9 cut(s)	134, 137, 140, 163, 172, 191, 194, 398, 494
NlaIII	CATG	3 cut(s)	165, 265, 327
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PkrI	GCNGC	8 cut(s)	107, 130, 133, 136, 139, 142, 187, 196
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	3 cut(s)	142, 295, 490
PstNI	CAGNNNCTG	1 cut(s)	137
PvuII	CAGCTG	2 cut(s)	137, 185
RsaI	GTAC	2 cut(s)	212, 338
RsaNI	GTAC	2 cut(s)	211, 337
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	8 cut(s)	106, 129, 132, 135, 138, 141, 186, 195
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	32, 100, 139, 187, 216, 234, 246, 306, 480
SfcI	CTRYAG	3 cut(s)	138, 291, 486
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	260
SnaBI	TACGTA	1 cut(s)	214
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	9 cut(s)	75, 81, 106, 128, 173, 195, 299, 390, 440
SstI	GAGCTC	1 cut(s)	306
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	100
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	3 cut(s)	108, 131, 197
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	5 cut(s)	131, 134, 137, 140, 185
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.