Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015394

Physical Location & Seq

Genomic Coordinates Reverse (-)

1223704 .. 1224318

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATAAGCACACGTGGCACAAATCCAATAACTGCTTACTCCTACAAACACTCTCTCTCTCCTCCCCAATCCTCTCTTCCTCCACTCCCAACCATGGCCTCACCAACACTCCTAACTCCTACCTCTAAACTCAAATCTCTTCCTCCAATCAAGTCCACCAAATCCACTACCACCACCACAACCACAATCCCACAACCTCGACGCCGCCAATTCTTATCCTTCGTAGCGGCAGCAGCAGTAGCAACTCTGTCCTCGCCAGCATGGCTCTTCCCGCTCACACCAGCAGCATTTGCCGCTTCGGACGAGGAGTACGTAAAAGAAACGGAGGAGATTATCAACAAGGTCAGAACGACCATTAACATGGATAGAAACGACCCCAATGTGGCTTCTGCCGTGGCGGAGCTGAGAGAAACATCAAACTCATGGGTGGCCAAGTACAGGAGGGAGAAGACTCTGCTCAGTAGGGTTTCTTTTAGAGACATTTACTCGGCAATCAATGCCGTTTCAGGGCATTATGTTAGTTTTGGACCGACAGCTCCGCTTCCGGCGAAGAGAAAGGCGAGGATTTTAGAAGAGGTGGAAACTGCAGAGAAGGCTTTGTTAAGGGGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009628 GO:0009642 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055035 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071704 GO:0104004 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII_Pbs27

Protein Analysis

205

Amino Acids

22.39

Weight (kDa)

10.08

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_Pbs27	PF13326	68 - 200	1.2e-34	Photosystem II Pbs27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03600
fragaria_vesca	FvH4_6g45050
malus_domestica	MD09G1090500.v1.1 MD17G1079700.v1.1
prunus_persica	Prupe.3G235100_v2.0.a1
pyrus_communis	pycom09g01520
rosa_chinensis	RchiOBHm_Chr2g0162381
rosa_laevigata	RLG00000021342
rosa_multiflora	Rmu_sc0004020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087970
rosa_rugosa	Rorug02G0497500
rosa_samantha	Rh2AG563400 Rh2BG575900 Rh2CG546200 Rh2DG586100
rosa_wichuraiana	Rw2G046620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	274
AciI	CCGC	6 cut(s)	205, 227, 272, 294, 398, 539
AcoI	YGGCCR	1 cut(s)	429
AcvI	CACGTG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	2 cut(s)	311, 437
AfiI	CCNNNNNNNGG	4 cut(s)	94, 382, 438, 507
AflIII	ACRYGT	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	2 cut(s)	403, 536
AluI	AGCT	2 cut(s)	403, 536
Alw26I	GTCTC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	96, 429
ApeKI	GCWGC	3 cut(s)	230, 233, 284
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	242, 245, 296
BceAI	ACGGC	2 cut(s)	377, 485
BcoDI	GTCTC	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	585
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	6 cut(s)	205, 228, 231, 234, 285, 294
BlsI	GCNGC	6 cut(s)	206, 229, 232, 235, 286, 295
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	455
BsaAI	YACGTR	2 cut(s)	14, 313
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	93, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 382, 438, 507
BseDI	CCNNGG	2 cut(s)	93, 393
BseLI	CCNNNNNNNGG	4 cut(s)	94, 382, 438, 507
BseMII	CTCAG	2 cut(s)	395, 472
BseRI	GAGGAG	3 cut(s)	51, 320, 341
BseXI	GCAGC	3 cut(s)	242, 245, 296
BshFI	GGCC	2 cut(s)	98, 431
BsiSI	CCGG	1 cut(s)	545
BslI	CCNNNNNNNGG	4 cut(s)	94, 382, 438, 507
BsmAI	GTCTC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	98, 431
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	6 cut(s)	205, 227, 272, 294, 398, 539
BspANI	GGCC	2 cut(s)	98, 431
BspCNI	CTCAG	2 cut(s)	396, 471
BspMAI	CTGCAG	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	93, 393
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	93
Bst6I	CTCTTC	5 cut(s)	81, 144, 272, 545, 567
BstACI	GRCGYC	1 cut(s)	202
BstAPI	GCANNNNNTGC	2 cut(s)	290, 497
BstBAI	YACGTR	2 cut(s)	14, 313
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	404, 458
BstDSI	CCRYGG	2 cut(s)	93, 393
BstMAI	GTCTC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 233, 239, 262, 271, 290, 293, 497, 593
BstSFI	CTRYAG	1 cut(s)	585
BstSNI	TACGTA	1 cut(s)	313
BstV1I	GCAGC	3 cut(s)	242, 245, 296
BstV2I	GAAGAC	1 cut(s)	455
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	98, 431
BtgI	CCRYGG	2 cut(s)	93, 393
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	527
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	310, 436
CviAII	CATG	4 cut(s)	94, 261, 361, 423
CviJI	RGCY	7 cut(s)	98, 265, 386, 403, 431, 536, 596
CviKI_1	RGCY	7 cut(s)	98, 265, 386, 403, 431, 536, 596
CviQI	GTAC	2 cut(s)	310, 436
DdeI	CTNAG	2 cut(s)	404, 458
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	5 cut(s)	81, 144, 272, 545, 567
EarI	CTCTTC	5 cut(s)	81, 144, 272, 545, 567
EciI	GGCGGA	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	527
Eco72I	CACGTG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	97, 264, 364, 426
FaiI	YATR	5 cut(s)	95, 262, 362, 424, 516
FatI	CATG	4 cut(s)	93, 260, 360, 422
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	205, 228, 231, 234, 285, 294
Fsp4HI	GCNGC	6 cut(s)	205, 228, 231, 234, 285, 294
GluI	GCNGC	6 cut(s)	205, 228, 231, 234, 285, 294
HaeIII	GGCC	2 cut(s)	98, 431
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	97, 264, 364, 426
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	301, 347
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	229, 586
HpyCH4IV	ACGT	2 cut(s)	13, 312
HpyCH4V	TGCA	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 233, 239, 262, 271, 290, 293, 497, 593
HpyF3I	CTNAG	2 cut(s)	404, 458
HpySE526I	ACGT	2 cut(s)	13, 312
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	97, 264, 364, 426
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	400, 541
LpnPI	CCDG	5 cut(s)	270, 294, 424, 492, 558
Lsp1109I	GCAGC	3 cut(s)	242, 245, 296
MaeII	ACGT	2 cut(s)	13, 312
MbiI	CCGCTC	1 cut(s)	274
MboII	GAAGA	6 cut(s)	68, 131, 259, 460, 562, 584
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	445
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	2 cut(s)	357, 602
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	9 cut(s)	15, 233, 239, 262, 271, 290, 293, 497, 593
NcoI	CCATGG	1 cut(s)	93
NlaIII	CATG	4 cut(s)	97, 264, 364, 426
NmeAIII	GCCGAG	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PkrI	GCNGC	6 cut(s)	206, 229, 232, 235, 286, 295
PleI	GAGTC	1 cut(s)	445
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	445
Ppu21I	YACGTR	2 cut(s)	14, 313
PspCI	CACGTG	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	589
RsaI	GTAC	2 cut(s)	311, 437
RsaNI	GTAC	2 cut(s)	310, 436
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	357, 602
SatI	GCNGC	6 cut(s)	205, 228, 231, 234, 285, 294
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	445
SetI	ASST	8 cut(s)	16, 125, 199, 315, 345, 405, 538, 579
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	359
SnaBI	TACGTA	1 cut(s)	313
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	6 cut(s)	205, 227, 272, 294, 398, 539
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	2 cut(s)	16, 315
TaqI	TCGA	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	544
TasI	AATT	1 cut(s)	209
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	3 cut(s)	207, 230, 296
Tru1I	TTAA	2 cut(s)	357, 602
Tru9I	TTAA	2 cut(s)	357, 602
TseI	GCWGC	3 cut(s)	230, 233, 284
TspGWI	ACGGA	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.