Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014049

Physical Location & Seq

Genomic Coordinates Forward (+)

954290 .. 956144

Gene Structure 1855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATGTCGTTTGTACGGAACATCAAATGAGGAAGCCAACGGTGGAGATTCCTCCGAGAAAGCTTCTTTTATCTTCCAAGAGTTTTCCTTCTGATTCTTCTTCCCCTCGCTCGCCGCGTAAACATAACTGGAACAAAAGCAACAAGATTACATCTGAACATGAAGAAGACAACGAAGACAACAACAGAGAGAATAAAGAGTACTGTTATGATTCTGACTCTGATGATCCTTACGCAAGTGATCATTTCCGGATGTTCGAATTCAAGATCCGTCGTTGCACTCGTAGCCGAAGCCACGATTGGACTGATTGTCCTTTTGCTCATCCCGGTGAGAAAGCTCGCCGTCGTGACCCTCGTCGCTTTCAATACTCCGGTGAGGTTTGTCCCGAGTTTCGTCGTGGTGGTGATTGTAGCCGTGGAGATGATTGTGAGTTTGCTCATGGAGTCTTCGAGTGTTGGCTCCATCCTATTCGTTACCGTACTGAAGCTTGTAAAGACGGTAAACACTGTAAAAGGAAAGTCTGTTTCTTTGCTCATTCGCCACGTCAGCTTAGGGTTCTTCCTCCGGAGAACGTTTCCGGTGTCTCAGCGTCGCCTTCTCCTGCGGCGAAGAATCCATGTTGCTTGTTTTGTAGCAGCTCTCCCACGAGCACTCTTTTGGGTAATTTGTCTCATCTTTCTCGATCTCCGTCTCTGTCTCCACCTATGTCTCCGGCTAATAAAGCCGCTGCTTTTTCACGGTTGAGGAACCGCGCCGCTTCTGCCGTTTCCGCCGCTGCAGCCGCTGGTTCAATGAACTATAAAGACGTTTTGAGCGAGCTTGTGAATTCTTTGGATTCCATGAGCTTAGCGGAAGCGCTGCAGGCGAGTTCCTCGTCGCCCGTTACAACTCCGGTTTCCGCTGCGGCTGCCGCGTTTGCGTCGTCCTGCGGTCTGAGCAATCAGCGTCTCCATCTCCAGCAACAACAACCAAGTAGCCCTTTGCAATTTGCTCTTTCGCCTTCCACTCCAAGTTACCTAACTAACTCACCTCAGGCGAACTTCTTCAGTGATGATTTCACTCCTCGCCGGAGACAGATGAACGATTTCACGGCGATGACGGCCGTTAGGGAGAATACTAACATTGAGGATGGTTCTTGTGGTGACCCTGATCTAGGATGGGTCAATGATCTCTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010029 GO:0010187 GO:0010468 GO:0010494 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1900140 GO:1903506 GO:1990904 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

393

Amino Acids

43.61

Weight (kDa)

8.12

Isoelectric Point (pI)

76.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	82 - 115	6.6e-20	AtC3H23-like, CCCH zinc finger
zf-CCCH	PF00642	126 - 148	6.5e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03790 AT5G44260
fragaria_vesca	FvH4_5g18230
malus_domestica	MD09G1243500.v1.1 MD17G1235500.v1.1
prunus_persica	Prupe.3G133500_v2.0.a1
pyrus_communis	pycom09g16210
rosa_chinensis	RchiOBHm_Chr2g0127531
rosa_laevigata	RLG00000018959
rosa_multiflora	Rmu_sc0004744.1_g000012
rosa_roxburghii	Rroxscaffold_2G00116460
rosa_rugosa	Rorug02G0273700
rosa_samantha	Rh2AG325500 Rh2BG335000 Rh2CG312900 Rh2DG352600
rosa_wichuraiana	Rw2G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	118, 753, 914
AccIII	TCCGGA	2 cut(s)	249, 565
AclI	AACGTT	1 cut(s)	573
AclWI	GGATC	2 cut(s)	221, 262
AcoI	YGGCCR	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	260, 826
AcuI	CTGAAG	2 cut(s)	504, 1030
AfaI	GTAC	3 cut(s)	16, 203, 481
AfeI	AGCGCT	1 cut(s)	858
AfiI	CCNNNNNNNGG	1 cut(s)	1154
AgsI	TTSAA	3 cut(s)	265, 365, 792
AhdI	GACNNNNNGTC	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	7 cut(s)	64, 338, 488, 550, 639, 820, 846
AluI	AGCT	7 cut(s)	64, 338, 488, 550, 639, 820, 846
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	7 cut(s)	589, 675, 696, 702, 714, 953, 1066
AlwI	GGATC	2 cut(s)	221, 262
AlwNI	CAGNNNCTG	1 cut(s)	785
Ama87I	CYCGRG	1 cut(s)	386
Aor13HI	TCCGGA	2 cut(s)	249, 565
Aor51HI	AGCGCT	1 cut(s)	858
AoxI	GGCC	1 cut(s)	1101
ApeKI	GCWGC	7 cut(s)	636, 728, 776, 779, 859, 902, 908
ApoI	RAATTY	2 cut(s)	260, 826
Asp700I	GAANNNNTTC	2 cut(s)	1043, 1085
AspLEI	GCGC	2 cut(s)	755, 859
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	5 cut(s)	341, 386, 416, 1020, 1154
AsuII	TTCGAA	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	1032
BauI	CACGAG	1 cut(s)	646
BbsI	GAAGAC	3 cut(s)	174, 183, 439
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	7 cut(s)	648, 715, 763, 791, 846, 889, 895
BccI	CCATC	4 cut(s)	471, 960, 1124, 1152
BceAI	ACGGC	6 cut(s)	327, 399, 749, 1088, 1107, 1116
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	7 cut(s)	589, 675, 696, 702, 714, 953, 1066
BfaI	CTAG	1 cut(s)	1154
BfmI	CTRYAG	2 cut(s)	777, 860
BfoI	RGCGCY	1 cut(s)	860
BlpI	GCTNAGC	1 cut(s)	847
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	461, 749
BmrFI	CCNGG	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	3 cut(s)	174, 183, 439
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	847
Bpu14I	TTCGAA	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	5 cut(s)	249, 371, 565, 578, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	1154
Bse1I	ACTGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	1032
BseAI	TCCGGA	2 cut(s)	249, 565
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	6 cut(s)	10, 258, 322, 463, 1135, 1163
BseLI	CCNNNNNNNGG	1 cut(s)	1154
BseMII	CTCAG	3 cut(s)	600, 926, 1046
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	1053
BseX3I	CGGCCG	1 cut(s)	1101
BseXI	GCAGC	7 cut(s)	648, 715, 763, 791, 846, 889, 895
Bsh1236I	CGCG	3 cut(s)	118, 753, 914
Bsh1285I	CGRYCG	1 cut(s)	1104
BshFI	GGCC	1 cut(s)	1103
BsiEI	CGRYCG	1 cut(s)	1104
BsiHKAI	GWGCWC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	8 cut(s)	250, 327, 372, 566, 579, 713, 893, 1069
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	1154
BsmAI	GTCTC	7 cut(s)	589, 675, 696, 702, 714, 953, 1066
BsmBI	CGTCTC	2 cut(s)	696, 953
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	1103
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp13I	TCCGGA	2 cut(s)	249, 565
Bsp143I	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
Bsp1720I	GCTNAGC	1 cut(s)	847
BspANI	GGCC	1 cut(s)	1103
BspCNI	CTCAG	3 cut(s)	599, 927, 1045
BspEI	TCCGGA	2 cut(s)	249, 565
BspFNI	CGCG	3 cut(s)	118, 753, 914
BspLI	GGNNCC	2 cut(s)	461, 749
BspMAI	CTGCAG	2 cut(s)	781, 864
BspPI	GGATC	2 cut(s)	221, 262
BspT104I	TTCGAA	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
BssSI	CACGAG	1 cut(s)	646
Bst2BI	CACGAG	1 cut(s)	646
Bst4CI	ACNGT	6 cut(s)	43, 206, 479, 500, 509, 741
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	113, 340, 818, 864
BstDEI	CTNAG	5 cut(s)	551, 586, 847, 935, 1032
BstDSI	CCRYGG	1 cut(s)	415
BstEII	GGTNACC	1 cut(s)	1142
BstENI	CCTNNNNNAGG	1 cut(s)	1152
BstF5I	GGATG	6 cut(s)	10, 258, 322, 463, 1135, 1163
BstFNI	CGCG	3 cut(s)	118, 753, 914
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	2 cut(s)	755, 859
BstKTI	GATC	6 cut(s)	229, 244, 270, 686, 1153, 1171
BstMAI	GTCTC	7 cut(s)	589, 675, 696, 702, 714, 953, 1066
BstMBI	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
BstMCI	CGRYCG	1 cut(s)	1104
BstPAI	GACNNNNGTC	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	1142
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	777, 860
BstUI	CGCG	3 cut(s)	118, 753, 914
BstV1I	GCAGC	7 cut(s)	648, 715, 763, 791, 846, 889, 895
BstV2I	GAAGAC	3 cut(s)	174, 183, 439
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	1101
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuRI	GGCC	1 cut(s)	1103
BtgI	CCRYGG	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	1109
BtrI	CACGTC	1 cut(s)	545
BtsCI	GGATG	6 cut(s)	10, 258, 322, 463, 1135, 1163
BtsIMutI	CAGTG	2 cut(s)	505, 1054
Cac8I	GCNNGC	4 cut(s)	113, 340, 818, 864
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	2 cut(s)	755, 859
CseI	GACGC	3 cut(s)	579, 909, 935
Csp6I	GTAC	3 cut(s)	15, 202, 480
CviAII	CATG	4 cut(s)	161, 440, 618, 841
CviQI	GTAC	3 cut(s)	15, 202, 480
DdeI	CTNAG	5 cut(s)	551, 586, 847, 935, 1032
DpnI	GATC	6 cut(s)	228, 243, 269, 685, 1152, 1170
DpnII	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
DriI	GACNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	1101
EagI	CGGCCG	1 cut(s)	1101
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	760
EclXI	CGGCCG	1 cut(s)	1101
Eco47III	AGCGCT	1 cut(s)	858
Eco52I	CGGCCG	1 cut(s)	1101
Eco57I	CTGAAG	2 cut(s)	504, 1030
Eco81I	CCTNAGG	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	1142
EcoNI	CCTNNNNNAGG	1 cut(s)	1152
EcoO65I	GGTNACC	1 cut(s)	1142
EcoRI	GAATTC	2 cut(s)	260, 826
Esp3I	CGTCTC	2 cut(s)	696, 953
FaeI	CATG	4 cut(s)	164, 443, 621, 844
FaiI	YATR	8 cut(s)	126, 162, 210, 441, 619, 707, 801, 842
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	4 cut(s)	160, 439, 617, 840
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	6 cut(s)	17, 265, 309, 450, 1142, 1170
FspBI	CTAG	1 cut(s)	1154
GlaI	GCGC	2 cut(s)	754, 858
GsuI	CTGGAG	1 cut(s)	941
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	1103
HapII	CCGG	8 cut(s)	250, 327, 372, 566, 579, 713, 893, 1069
HgaI	GACGC	3 cut(s)	579, 909, 935
HhaI	GCGC	2 cut(s)	755, 859
Hin1II	CATG	4 cut(s)	164, 443, 621, 844
Hin6I	GCGC	2 cut(s)	753, 857
HinP1I	GCGC	2 cut(s)	753, 857
HindIII	AAGCTT	2 cut(s)	62, 486
HinfI	GANTC	7 cut(s)	49, 95, 212, 218, 444, 613, 836
HpaII	CCGG	8 cut(s)	250, 327, 372, 566, 579, 713, 893, 1069
HphI	GGTGA	5 cut(s)	341, 386, 416, 1020, 1154
Hpy166II	GTNNAC	2 cut(s)	122, 503
Hpy188I	TCNGA	6 cut(s)	57, 94, 157, 217, 223, 936
Hpy188III	TCNNGA	7 cut(s)	250, 265, 347, 386, 566, 681, 1174
Hpy8I	GTNNAC	2 cut(s)	122, 503
Hpy99I	CGWCG	7 cut(s)	276, 348, 360, 399, 595, 880, 925
HpyAV	CCTTC	3 cut(s)	99, 606, 1011
HpyCH4III	ACNGT	6 cut(s)	43, 206, 479, 500, 509, 741
HpyCH4IV	ACGT	3 cut(s)	544, 573, 807
HpyCH4V	TGCA	4 cut(s)	279, 779, 862, 985
HpyF3I	CTNAG	5 cut(s)	551, 586, 847, 935, 1032
HpySE526I	ACGT	3 cut(s)	544, 573, 807
Hsp92II	CATG	4 cut(s)	164, 443, 621, 844
HspAI	GCGC	2 cut(s)	753, 857
Kpn2I	TCCGGA	2 cut(s)	249, 565
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	7 cut(s)	648, 715, 763, 791, 846, 889, 895
MaeI	CTAG	1 cut(s)	1154
MaeII	ACGT	3 cut(s)	544, 573, 807
MaeIII	GTNAC	5 cut(s)	347, 473, 883, 1013, 1142
MalI	GATC	6 cut(s)	228, 243, 269, 685, 1152, 1170
MboI	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	4 cut(s)	260, 664, 826, 986
MlyI	GAGTC	2 cut(s)	212, 453
MroI	TCCGGA	2 cut(s)	249, 565
MroXI	GAANNNNTTC	2 cut(s)	1043, 1085
MslI	CAYNNNNRTG	2 cut(s)	327, 1094
MspA1I	CMGCKG	4 cut(s)	728, 776, 785, 902
MspI	CCGG	8 cut(s)	250, 327, 372, 566, 579, 713, 893, 1069
MspR9I	CCNGG	1 cut(s)	327
MvnI	CGCG	3 cut(s)	118, 753, 914
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
NlaIII	CATG	4 cut(s)	164, 443, 621, 844
NlaIV	GGNNCC	2 cut(s)	461, 749
NmuCI	GTSAC	2 cut(s)	347, 1142
NspV	TTCGAA	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	4 cut(s)	115, 280, 352, 813
PdmI	GAANNNNTTC	2 cut(s)	1043, 1085
PfeI	GAWTC	5 cut(s)	49, 95, 212, 613, 836
PleI	GAGTC	2 cut(s)	212, 452
PpsI	GAGTC	2 cut(s)	212, 452
PshAI	GACNNNNGTC	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	573
PspEI	GGTNACC	1 cut(s)	1142
PspN4I	GGNNCC	2 cut(s)	461, 749
PstI	CTGCAG	2 cut(s)	781, 864
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	3 cut(s)	16, 203, 481
RsaNI	GTAC	3 cut(s)	15, 202, 480
RseI	CAYNNNNRTG	2 cut(s)	327, 1094
Sau3AI	GATC	6 cut(s)	226, 241, 267, 683, 1150, 1168
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	2 cut(s)	212, 453
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	777, 860
SfuI	TTCGAA	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	327, 1094
Sse9I	AATT	4 cut(s)	260, 664, 826, 986
SspMI	CTAG	1 cut(s)	1154
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	6 cut(s)	43, 206, 479, 500, 509, 741
TaiI	ACGT	3 cut(s)	547, 576, 810
TaqI	TCGA	3 cut(s)	258, 450, 682
TasI	AATT	4 cut(s)	260, 664, 826, 986
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	8 cut(s)	118, 608, 728, 758, 776, 785, 908, 914
TfiI	GAWTC	5 cut(s)	49, 95, 212, 613, 836
TscAI	CASTG	2 cut(s)	512, 1054
TseFI	GTSAC	2 cut(s)	347, 1142
TseI	GCWGC	7 cut(s)	636, 728, 776, 779, 859, 902, 908
Tsp45I	GTSAC	2 cut(s)	347, 1142
TspDTI	ATGAA	3 cut(s)	177, 809, 1094
TspGWI	ACGGA	3 cut(s)	32, 260, 678
TspRI	CASTG	2 cut(s)	512, 1054
XagI	CCTNNNNNAGG	1 cut(s)	1152
XapI	RAATTY	2 cut(s)	260, 826
XmnI	GAANNNNTTC	2 cut(s)	1043, 1085
XspI	CTAG	1 cut(s)	1154
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.