zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03790 AT5G44260 |
| fragaria_vesca | FvH4_5g18230 |
| malus_domestica | MD09G1243500.v1.1 MD17G1235500.v1.1 |
| prunus_persica | Prupe.3G133500_v2.0.a1 |
| pyrus_communis | pycom09g16210 |
| rosa_chinensis | RchiOBHm_Chr2g0127531 |
| rosa_laevigata | RLG00000018959 |
| rosa_multiflora | Rmu_sc0004744.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00116460 |
| rosa_rugosa | Rorug02G0273700 |
| rosa_samantha | Rh2AG325500 Rh2BG335000 Rh2CG312900 Rh2DG352600 |
| rosa_wichuraiana | Rw2G026400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 9 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1022 |
| AccI | GTMKAC | 1 cut(s) | 37 |
| AccII | CGCG | 2 cut(s) | 114, 217 |
| AccIII | TCCGGA | 1 cut(s) | 183 |
| AciI | CCGC | 9 cut(s) | 78, 363, 531, 656, 703, 714, 869, 1058, 1061 |
| AclWI | GGATC | 4 cut(s) | 155, 168, 196, 544 |
| AcoI | YGGCCR | 3 cut(s) | 25, 967, 1024 |
| AcsI | RAATTY | 3 cut(s) | 194, 628, 1007 |
| AcuI | CTGAAG | 1 cut(s) | 959 |
| AcvI | CACGTG | 1 cut(s) | 1019 |
| AcyI | GRCGYC | 1 cut(s) | 6 |
| AdeI | CACNNNGTG | 2 cut(s) | 1019, 1022 |
| AfaI | GTAC | 4 cut(s) | 191, 415, 619, 720 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 170, 559, 1022, 1071, 1072 |
| AflII | CTTAAG | 1 cut(s) | 751 |
| AflIII | ACRYGT | 1 cut(s) | 215 |
| AgsI | TTSAA | 5 cut(s) | 102, 199, 628, 948, 1091 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 243 |
| AjiI | CACGTC | 1 cut(s) | 479 |
| Alw21I | GWGCWC | 1 cut(s) | 215 |
| Alw26I | GTCTC | 7 cut(s) | 90, 168, 657, 669, 761, 792, 882 |
| Alw44I | GTGCAC | 1 cut(s) | 211 |
| AlwI | GGATC | 4 cut(s) | 155, 168, 196, 544 |
| Aor13HI | TCCGGA | 1 cut(s) | 183 |
| AoxI | GGCC | 4 cut(s) | 25, 967, 1024, 1062 |
| ApaLI | GTGCAC | 1 cut(s) | 211 |
| ApeKI | GCWGC | 5 cut(s) | 773, 843, 1049, 1052, 1055 |
| ApoI | RAATTY | 3 cut(s) | 194, 628, 1007 |
| AspS9I | GGNCC | 2 cut(s) | 237, 1063 |
| AsuC2I | CCSGG | 2 cut(s) | 261, 506 |
| AsuHPI | GGTGA | 7 cut(s) | 275, 350, 365, 531, 633, 930, 1138 |
| AvaII | GGWCC | 1 cut(s) | 237 |
| BaeGI | GKGCMC | 1 cut(s) | 215 |
| BalI | TGGCCA | 1 cut(s) | 969 |
| BamHI | GGATCC | 1 cut(s) | 160 |
| BbrPI | CACGTG | 1 cut(s) | 1019 |
| BbsI | GAAGAC | 1 cut(s) | 857 |
| Bbv12I | GWGCWC | 1 cut(s) | 215 |
| BbvI | GCAGC | 5 cut(s) | 785, 855, 1036, 1042, 1064 |
| BccI | CCATC | 1 cut(s) | 1116 |
| BceAI | ACGGC | 9 cut(s) | 207, 264, 315, 333, 690, 701, 710, 828, 856 |
| BcnI | CCSGG | 2 cut(s) | 261, 506 |
| BcoDI | GTCTC | 7 cut(s) | 90, 168, 657, 669, 761, 792, 882 |
| BfaI | CTAG | 3 cut(s) | 1071, 1101, 1118 |
| BfmI | CTRYAG | 1 cut(s) | 1050 |
| BfrI | CTTAAG | 1 cut(s) | 751 |
| BglII | AGATCT | 1 cut(s) | 895 |
| BisI | GCNGC | 8 cut(s) | 703, 774, 844, 1050, 1053, 1056, 1059, 1062 |
| BlpI | GCTNAGC | 2 cut(s) | 698, 1031 |
| BlsI | GCNGC | 8 cut(s) | 704, 775, 845, 1051, 1054, 1057, 1060, 1063 |
| BmcAI | AGTACT | 1 cut(s) | 619 |
| Bme1390I | CCNGG | 2 cut(s) | 261, 506 |
| Bme18I | GGWCC | 1 cut(s) | 237 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 243 |
| BmgBI | CACGTC | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 2 cut(s) | 237, 1063 |
| BmiI | GGNNCC | 1 cut(s) | 162 |
| BmrFI | CCNGG | 2 cut(s) | 261, 506 |
| BmsI | GCATC | 2 cut(s) | 566, 673 |
| BpiI | GAAGAC | 1 cut(s) | 857 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 904, 936 |
| BpmI | CTGGAG | 2 cut(s) | 192, 651 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 698, 1031 |
| BpuMI | CCSGG | 2 cut(s) | 261, 506 |
| Bsa29I | ATCGAT | 1 cut(s) | 583 |
| BsaAI | YACGTR | 1 cut(s) | 1019 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1113 |
| BsaHI | GRCGYC | 1 cut(s) | 6 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 6 cut(s) | 59, 349, 504, 810, 872, 964 |
| BsaWI | WCCGGW | 3 cut(s) | 183, 305, 521 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 170, 559, 1022, 1071, 1072 |
| Bse118I | RCCGGY | 2 cut(s) | 291, 1026 |
| Bse1I | ACTGG | 1 cut(s) | 239 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1113 |
| BseAI | TCCGGA | 1 cut(s) | 183 |
| BseCI | ATCGAT | 1 cut(s) | 583 |
| BseDI | CCNNGG | 6 cut(s) | 59, 349, 504, 810, 872, 964 |
| BseGI | GGATG | 5 cut(s) | 192, 256, 397, 548, 1127 |
| BseJI | GATNNNNATC | 1 cut(s) | 1113 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 170, 559, 1022, 1071, 1072 |
| BseMII | CTCAG | 4 cut(s) | 147, 312, 476, 689 |
| BseNI | ACTGG | 1 cut(s) | 239 |
| BseSI | GKGCMC | 1 cut(s) | 215 |
| BseXI | GCAGC | 5 cut(s) | 785, 855, 1036, 1042, 1064 |
| Bsh1236I | CGCG | 2 cut(s) | 114, 217 |
| BshFI | GGCC | 4 cut(s) | 27, 969, 1026, 1064 |
| BshVI | ATCGAT | 1 cut(s) | 583 |
| BsiHKAI | GWGCWC | 1 cut(s) | 215 |
| BsiSI | CCGG | 8 cut(s) | 24, 184, 261, 292, 306, 506, 522, 1027 |
| BsiWI | CGTACG | 1 cut(s) | 413 |
| BslFI | GGGAC | 2 cut(s) | 90, 487 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 170, 559, 1022, 1071, 1072 |
| BsmAI | GTCTC | 7 cut(s) | 90, 168, 657, 669, 761, 792, 882 |
| BsmBI | CGTCTC | 2 cut(s) | 657, 792 |
| BsmFI | GGGAC | 2 cut(s) | 90, 487 |
| BsmI | GAATGC | 1 cut(s) | 365 |
| BsnI | GGCC | 4 cut(s) | 27, 969, 1026, 1064 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 1 cut(s) | 215 |
| Bsp13I | TCCGGA | 1 cut(s) | 183 |
| Bsp143I | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 698, 1031 |
| Bsp19I | CCATGG | 1 cut(s) | 964 |
| Bsp68I | TCGCGA | 1 cut(s) | 114 |
| BspACI | CCGC | 9 cut(s) | 78, 363, 531, 656, 703, 714, 869, 1058, 1061 |
| BspANI | GGCC | 4 cut(s) | 27, 969, 1026, 1064 |
| BspCNI | CTCAG | 4 cut(s) | 148, 313, 477, 690 |
| BspDI | ATCGAT | 1 cut(s) | 583 |
| BspEI | TCCGGA | 1 cut(s) | 183 |
| BspFNI | CGCG | 2 cut(s) | 114, 217 |
| BspLI | GGNNCC | 1 cut(s) | 162 |
| BspMAI | CTGCAG | 1 cut(s) | 1054 |
| BspPI | GGATC | 4 cut(s) | 155, 168, 196, 544 |
| BspTI | CTTAAG | 1 cut(s) | 751 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrFI | RCCGGY | 2 cut(s) | 291, 1026 |
| BsrI | ACTGG | 1 cut(s) | 239 |
| BssAI | RCCGGY | 2 cut(s) | 291, 1026 |
| BssECI | CCNNGG | 6 cut(s) | 59, 349, 504, 810, 872, 964 |
| BssMI | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| BssNI | GRCGYC | 1 cut(s) | 6 |
| BssT1I | CCWWGG | 1 cut(s) | 964 |
| BstACI | GRCGYC | 1 cut(s) | 6 |
| BstAFI | CTTAAG | 1 cut(s) | 751 |
| BstBAI | YACGTR | 1 cut(s) | 1019 |
| BstC8I | GCNNGC | 3 cut(s) | 215, 971, 1028 |
| BstDEI | CTNAG | 6 cut(s) | 156, 321, 485, 698, 839, 1031 |
| BstDSI | CCRYGG | 4 cut(s) | 349, 810, 872, 964 |
| BstF5I | GGATG | 5 cut(s) | 192, 256, 397, 548, 1127 |
| BstFNI | CGCG | 2 cut(s) | 114, 217 |
| BstKTI | GATC | 9 cut(s) | 163, 204, 539, 641, 825, 898, 1111, 1117, 1135 |
| BstMAI | GTCTC | 7 cut(s) | 90, 168, 657, 669, 761, 792, 882 |
| BstMBI | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| BstSCI | CCNGG | 2 cut(s) | 259, 504 |
| BstSFI | CTRYAG | 1 cut(s) | 1050 |
| BstSLI | GKGCMC | 1 cut(s) | 215 |
| BstUI | CGCG | 2 cut(s) | 114, 217 |
| BstV1I | GCAGC | 5 cut(s) | 785, 855, 1036, 1042, 1064 |
| BstV2I | GAAGAC | 1 cut(s) | 857 |
| BstX2I | RGATCY | 3 cut(s) | 160, 201, 895 |
| BstYI | RGATCY | 3 cut(s) | 160, 201, 895 |
| Bsu15I | ATCGAT | 1 cut(s) | 583 |
| BsuRI | GGCC | 4 cut(s) | 27, 969, 1026, 1064 |
| BsuTUI | ATCGAT | 1 cut(s) | 583 |
| BtgI | CCRYGG | 4 cut(s) | 349, 810, 872, 964 |
| BtgZI | GCGATG | 1 cut(s) | 1017 |
| BtrI | CACGTC | 1 cut(s) | 479 |
| BtsCI | GGATG | 5 cut(s) | 192, 256, 397, 548, 1127 |
| BtuMI | TCGCGA | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 3 cut(s) | 215, 971, 1028 |
| Cfr10I | RCCGGY | 2 cut(s) | 291, 1026 |
| Cfr13I | GGNCC | 2 cut(s) | 237, 1063 |
| ClaI | ATCGAT | 1 cut(s) | 583 |
| Csp6I | GTAC | 4 cut(s) | 190, 414, 618, 719 |
| CviAII | CATG | 4 cut(s) | 230, 799, 965, 1143 |
| CviQI | GTAC | 4 cut(s) | 190, 414, 618, 719 |
| DdeI | CTNAG | 6 cut(s) | 156, 321, 485, 698, 839, 1031 |
| DpnI | GATC | 9 cut(s) | 162, 203, 538, 640, 824, 897, 1110, 1116, 1134 |
| DpnII | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| DraIII | CACNNNGTG | 2 cut(s) | 1019, 1022 |
| DriI | GACNNNNNGTC | 1 cut(s) | 243 |
| EaeI | YGGCCR | 3 cut(s) | 25, 967, 1024 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 243 |
| EciI | GGCGGA | 3 cut(s) | 67, 645, 858 |
| Eco130I | CCWWGG | 1 cut(s) | 964 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 237 |
| Eco57I | CTGAAG | 1 cut(s) | 959 |
| Eco72I | CACGTG | 1 cut(s) | 1019 |
| EcoRI | GAATTC | 2 cut(s) | 194, 1007 |
| EcoT14I | CCWWGG | 1 cut(s) | 964 |
| EcoT22I | ATGCAT | 1 cut(s) | 688 |
| ErhI | CCWWGG | 1 cut(s) | 964 |
| Esp3I | CGTCTC | 2 cut(s) | 657, 792 |
| FaeI | CATG | 4 cut(s) | 233, 802, 968, 1146 |
| FaiI | YATR | 7 cut(s) | 120, 231, 316, 516, 800, 966, 1144 |
| FaqI | GGGAC | 2 cut(s) | 90, 487 |
| FatI | CATG | 4 cut(s) | 229, 798, 964, 1142 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 8 cut(s) | 703, 774, 844, 1050, 1053, 1056, 1059, 1062 |
| FokI | GGATG | 5 cut(s) | 199, 243, 384, 535, 1134 |
| Fsp4HI | GCNGC | 8 cut(s) | 703, 774, 844, 1050, 1053, 1056, 1059, 1062 |
| FspBI | CTAG | 3 cut(s) | 1071, 1101, 1118 |
| GluI | GCNGC | 8 cut(s) | 703, 774, 844, 1050, 1053, 1056, 1059, 1062 |
| GsuI | CTGGAG | 2 cut(s) | 192, 651 |
| HaeIII | GGCC | 4 cut(s) | 27, 969, 1026, 1064 |
| HapII | CCGG | 8 cut(s) | 24, 184, 261, 292, 306, 506, 522, 1027 |
| Hin1I | GRCGYC | 1 cut(s) | 6 |
| Hin1II | CATG | 4 cut(s) | 233, 802, 968, 1146 |
| HindIII | AAGCTT | 2 cut(s) | 65, 420 |
| HinfI | GANTC | 6 cut(s) | 146, 152, 403, 511, 746, 835 |
| HpaII | CCGG | 8 cut(s) | 24, 184, 261, 292, 306, 506, 522, 1027 |
| HphI | GGTGA | 7 cut(s) | 275, 350, 365, 531, 633, 930, 1138 |
| Hpy166II | GTNNAC | 3 cut(s) | 38, 213, 1129 |
| Hpy188I | TCNGA | 6 cut(s) | 151, 157, 206, 402, 612, 887 |
| Hpy188III | TCNNGA | 6 cut(s) | 113, 184, 199, 625, 636, 1112 |
| Hpy8I | GTNNAC | 3 cut(s) | 38, 213, 1129 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 94, 210, 279, 547, 616, 711, 820, 991 |
| HpyAV | CCTTC | 3 cut(s) | 119, 654, 951 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 478, 1018 |
| HpyCH4V | TGCA | 5 cut(s) | 213, 557, 686, 773, 1052 |
| HpyF3I | CTNAG | 6 cut(s) | 156, 321, 485, 698, 839, 1031 |
| HpySE526I | ACGT | 3 cut(s) | 6, 478, 1018 |
| Hsp92I | GRCGYC | 1 cut(s) | 6 |
| Hsp92II | CATG | 4 cut(s) | 233, 802, 968, 1146 |
| Kpn2I | TCCGGA | 1 cut(s) | 183 |
| KroI | GCCGGC | 1 cut(s) | 1026 |
| KroNI | GCCGGC | 1 cut(s) | 1028 |
| Kzo9I | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| Lsp1109I | GCAGC | 5 cut(s) | 785, 855, 1036, 1042, 1064 |
| LweI | GCATC | 2 cut(s) | 566, 673 |
| MaeI | CTAG | 3 cut(s) | 1071, 1101, 1118 |
| MaeII | ACGT | 3 cut(s) | 6, 478, 1018 |
| MaeIII | GTNAC | 6 cut(s) | 140, 281, 332, 407, 793, 956 |
| MalI | GATC | 9 cut(s) | 162, 203, 538, 640, 824, 897, 1110, 1116, 1134 |
| MboI | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| MboII | GAAGA | 4 cut(s) | 485, 771, 857, 936 |
| MflI | RGATCY | 3 cut(s) | 160, 201, 895 |
| MhlI | GDGCHC | 1 cut(s) | 215 |
| MlsI | TGGCCA | 1 cut(s) | 969 |
| MluCI | AATT | 4 cut(s) | 194, 628, 902, 1007 |
| MluI | ACGCGT | 1 cut(s) | 215 |
| MluNI | TGGCCA | 1 cut(s) | 969 |
| MlyI | GAGTC | 3 cut(s) | 140, 146, 412 |
| MmeI | TCCRAC | 3 cut(s) | 229, 635, 865 |
| MnlI | CCTC | 7 cut(s) | 54, 85, 151, 297, 441, 930, 971 |
| Mox20I | TGGCCA | 1 cut(s) | 969 |
| Mph1103I | ATGCAT | 1 cut(s) | 688 |
| MroI | TCCGGA | 1 cut(s) | 183 |
| MroNI | GCCGGC | 1 cut(s) | 1026 |
| MscI | TGGCCA | 1 cut(s) | 969 |
| MseI | TTAA | 2 cut(s) | 566, 752 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| Msp20I | TGGCCA | 1 cut(s) | 969 |
| MspA1I | CMGCKG | 3 cut(s) | 484, 671, 1055 |
| MspCI | CTTAAG | 1 cut(s) | 751 |
| MspI | CCGG | 8 cut(s) | 24, 184, 261, 292, 306, 506, 522, 1027 |
| MspR9I | CCNGG | 2 cut(s) | 261, 506 |
| Mva1269I | GAATGC | 1 cut(s) | 365 |
| MvnI | CGCG | 2 cut(s) | 114, 217 |
| NaeI | GCCGGC | 1 cut(s) | 1028 |
| NciI | CCSGG | 2 cut(s) | 261, 506 |
| NcoI | CCATGG | 1 cut(s) | 964 |
| NdeII | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| NgoMIV | GCCGGC | 1 cut(s) | 1026 |
| NlaIII | CATG | 4 cut(s) | 233, 802, 968, 1146 |
| NlaIV | GGNNCC | 1 cut(s) | 162 |
| NmuCI | GTSAC | 2 cut(s) | 281, 332 |
| NruI | TCGCGA | 1 cut(s) | 114 |
| NsiI | ATGCAT | 1 cut(s) | 688 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 214, 381 |
| PctI | GAATGC | 1 cut(s) | 365 |
| PdiI | GCCGGC | 1 cut(s) | 1028 |
| PfeI | GAWTC | 3 cut(s) | 511, 746, 835 |
| Pfl23II | CGTACG | 1 cut(s) | 413 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1022 |
| PkrI | GCNGC | 8 cut(s) | 704, 775, 845, 1051, 1054, 1057, 1060, 1063 |
| PleI | GAGTC | 3 cut(s) | 140, 146, 411 |
| PmaCI | CACGTG | 1 cut(s) | 1019 |
| PmlI | CACGTG | 1 cut(s) | 1019 |
| PpsI | GAGTC | 3 cut(s) | 140, 146, 411 |
| Ppu21I | YACGTR | 1 cut(s) | 1019 |
| PspCI | CACGTG | 1 cut(s) | 1019 |
| PspLI | CGTACG | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 1 cut(s) | 162 |
| PspPI | GGNCC | 2 cut(s) | 237, 1063 |
| PstI | CTGCAG | 1 cut(s) | 1054 |
| PsuI | RGATCY | 3 cut(s) | 160, 201, 895 |
| PvuII | CAGCTG | 3 cut(s) | 484, 671, 1055 |
| RruI | TCGCGA | 1 cut(s) | 114 |
| RsaI | GTAC | 4 cut(s) | 191, 415, 619, 720 |
| RsaNI | GTAC | 4 cut(s) | 190, 414, 618, 719 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 566, 752 |
| SatI | GCNGC | 8 cut(s) | 703, 774, 844, 1050, 1053, 1056, 1059, 1062 |
| Sau3AI | GATC | 9 cut(s) | 160, 201, 536, 638, 822, 895, 1108, 1114, 1132 |
| Sau96I | GGNCC | 2 cut(s) | 237, 1063 |
| ScaI | AGTACT | 1 cut(s) | 619 |
| SchI | GAGTC | 3 cut(s) | 140, 146, 412 |
| ScrFI | CCNGG | 2 cut(s) | 261, 506 |
| SduI | GDGCHC | 1 cut(s) | 215 |
| SfaNI | GCATC | 2 cut(s) | 566, 673 |
| SfcI | CTRYAG | 1 cut(s) | 1050 |
| SinI | GGWCC | 1 cut(s) | 237 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 1 cut(s) | 751 |
| SmoI | CTYRAG | 1 cut(s) | 751 |
| Sse9I | AATT | 4 cut(s) | 194, 628, 902, 1007 |
| SsiI | CCGC | 9 cut(s) | 78, 363, 531, 656, 703, 714, 869, 1058, 1061 |
| SspMI | CTAG | 3 cut(s) | 1071, 1101, 1118 |
| StyD4I | CCNGG | 2 cut(s) | 259, 504 |
| StyI | CCWWGG | 1 cut(s) | 964 |
| TaiI | ACGT | 3 cut(s) | 9, 481, 1021 |
| TaqI | TCGA | 5 cut(s) | 9, 384, 583, 833, 989 |
| TaqII | GACCGA | 1 cut(s) | 254 |
| TasI | AATT | 4 cut(s) | 194, 628, 902, 1007 |
| TatI | WGTACW | 1 cut(s) | 617 |
| TauI | GCSGC | 3 cut(s) | 705, 1061, 1064 |
| TfiI | GAWTC | 3 cut(s) | 511, 746, 835 |
| Tru1I | TTAA | 2 cut(s) | 566, 752 |
| Tru9I | TTAA | 2 cut(s) | 566, 752 |
| TseFI | GTSAC | 2 cut(s) | 281, 332 |
| TseI | GCWGC | 5 cut(s) | 773, 843, 1049, 1052, 1055 |
| Tsp45I | GTSAC | 2 cut(s) | 281, 332 |
| TspDTI | ATGAA | 6 cut(s) | 372, 386, 636, 771, 819, 1020 |
| TspGWI | ACGGA | 3 cut(s) | 78, 431, 776 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1022 |
| Vha464I | CTTAAG | 1 cut(s) | 751 |
| VneI | GTGCAC | 1 cut(s) | 211 |
| VpaK11BI | GGWCC | 1 cut(s) | 237 |
| XapI | RAATTY | 3 cut(s) | 194, 628, 1007 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XspI | CTAG | 3 cut(s) | 1071, 1101, 1118 |
| ZraI | GACGTC | 1 cut(s) | 7 |
| ZrmI | AGTACT | 1 cut(s) | 619 |
| Zsp2I | ATGCAT | 1 cut(s) | 688 |