MD09G1243500.v1.1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
31115750 .. 31117069
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1243500.v1.1.491

Sequence Viewer

Length: 1320 bp
ATGAGTAGTGTTTGCGACGAGCAGCACAATTTCCACCCCTCCCACCAGCTCCAATCATTCAAGAAAACCCTCCTCAGGGACAGCAACACTGACATCCCACCGAGGAAGCTCCTCACCCGCCGCAGCCCCCAAGAATTTCCCTCTTCTGACATGTACGCCGCAGCTGACTGCGGATCCCCGCGCTTCTCCTCCGCTGACGAGGCCCTCGTCCGCAAATTCCTCCCCTGCAACACCGGCTCTGATGACTCTGATGACGACGAGGTCGATCCCTACTCCTCCGACCACTTCCGCATGTTTGAGTTCAAGGTCCGCCGGTGCACCCGCAGCCGCAGCCACGACTGGACTGACTGCCCTTTCGCCCACCCCGGAGAGAAGGCTCGCCGGCGGGACCCGCGCCGCCATCACTACTCAGGCACCGTGTGCGCGGACTATCGGCGTGGATCATGCAGCCGCGGCGACAGCTGTGAATTTTCGCACGGAGTCTTTGAGTGCTGGCTGCACCCGGCGAGGTATAGAACTGAGGCTTGCAAAGACGGGAAGAACTGCAAGAGGAAGGTGTGCTTCTTTGCGCACACGCCACGTCAGCTTAGGGTTTTGCCGGCGGATCAGGTGCTTTCCCCCATGGCTGGTTCCAAGAAGTACCACCTGAACAACTCATCGGTGGGGTCGCCCCGTTCCTGTTCGAACAACAATAAACAGTACTGCTGTTTGTTCTGTCATTCAGCGGCGGCGACGTCGTCTCCAACTTCGACTCTGTTGGACGGTATGTCTCATCATTTGTCGCCGCCTGTGTCGCCAGCAGCTAAACACTGCTCGTCGGTGGACGAGTTTCATAATTCGCCAGTTATGTCTCCCTGTGGTGGGTTAGGGTTGGGGTGTTTGGATCAGGTGCATGCAAGCACAGGTGGGTTGATGAGCTACAACGAAGTGGTTGCTGAGCTCATGAGCTCCTTGGAGGCCATGAAATTCCATGAAGCTGCCGCTGCCGCTGCTGCTTCTCAGAAGAGGTGGGTCGACATTTCATTTGATGTGAATATGAATTATGCTGCTGCTGATGACGATCTGCAGCAGCAGCAACAACAGTTTATTCTTTCACCGTCCACTCCGAGCCCAAGCCAACCATTTGGAGGCGGAAAAGGACGCGGGATCAATTTTTTTGACGGGGATGAAAATTGGTCATCAAGAAATGGAAGCTTGTTGGGTTTTGATCGTGATACCAATATGCCCATAAAAAATAACGAGATCATTAACGGAGGAGGGTTTACCTCAGCCGCTGACTCGGACCCGGATCTTGGCTGGGTTAATGACCTCTTGATGTAA

Protein Analysis

440

Amino Acids

48.52

Weight (kDa)

6.43

Isoelectric Point (pI)

69.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_AtC3H23 PF25512 95 - 128 5.2e-20 AtC3H23-like, CCCH zinc finger
zf-CCCH PF00642 139 - 160 4.6e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03790 AT5G44260
fragaria_vesca FvH4_5g18230
malus_domestica MD09G1243500.v1.1 MD17G1235500.v1.1
prunus_persica Prupe.3G133500_v2.0.a1
pyrus_communis pycom09g16210
rosa_chinensis RchiOBHm_Chr2g0127531
rosa_laevigata RLG00000018959
rosa_multiflora Rmu_sc0004744.1_g000012
rosa_roxburghii Rroxscaffold_2G00116460
rosa_rugosa Rorug02G0273700
rosa_samantha Rh2AG325500 Rh2BG335000 Rh2CG312900 Rh2DG352600
rosa_wichuraiana Rw2G026400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 737
Acc16I TGCGCA 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 5 cut(s) 181, 394, 425, 453, 1143
AclWI GGATC 8 cut(s) 168, 181, 260, 448, 612, 891, 1154, 1296
AcsI RAATTY 4 cut(s) 134, 215, 467, 965
AcyI GRCGYC 1 cut(s) 734
AdeI CACNNNGTG 1 cut(s) 420
AfaI GTAC 3 cut(s) 155, 641, 701
AfiI CCNNNNNNNGG 7 cut(s) 75, 76, 626, 860, 861, 1127, 1292
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 2 cut(s) 61, 304
AhdI GACNNNNNGTC 1 cut(s) 766
AjiI CACGTC 1 cut(s) 581
Alw21I GWGCWC 3 cut(s) 320, 942, 950
Alw26I GTCTC 3 cut(s) 744, 774, 855
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 8 cut(s) 168, 181, 260, 448, 612, 891, 1154, 1296
AlwNI CAGNNNCTG 1 cut(s) 1274
AoxI GGCC 2 cut(s) 201, 957
ApaLI GTGCAC 1 cut(s) 316
ApoI RAATTY 4 cut(s) 134, 215, 467, 965
ArsI GACNNNNNNTTYG 4 cut(s) 338, 370, 1007, 1039
AspLEI GCGC 4 cut(s) 183, 396, 425, 571
AspS9I GGNCC 4 cut(s) 202, 307, 388, 1282
AsuC2I CCSGG 3 cut(s) 366, 503, 1286
AsuHPI GGTGA 2 cut(s) 106, 1086
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 3 cut(s) 307, 388, 1282
AxyI CCTNAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 320
BamHI GGATCC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 3 cut(s) 942, 950, 1112
Bbv12I GWGCWC 3 cut(s) 320, 942, 950
BbvCI CCTCAGC 1 cut(s) 1267
BccI CCATC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 914, 948
BcnI CCSGG 3 cut(s) 366, 503, 1286
BcoDI GTCTC 3 cut(s) 744, 774, 855
BfmI CTRYAG 1 cut(s) 1064
BlpI GCTNAGC 1 cut(s) 936
BmcAI AGTACT 1 cut(s) 701
Bme1390I CCNGG 3 cut(s) 366, 503, 1286
Bme18I GGWCC 3 cut(s) 307, 388, 1282
BmeRI GACNNNNNGTC 1 cut(s) 766
BmgBI CACGTC 1 cut(s) 581
BmgT120I GGNCC 4 cut(s) 202, 307, 388, 1282
BmiI GGNNCC 6 cut(s) 175, 389, 390, 415, 631, 1284
BmrFI CCNGG 3 cut(s) 366, 503, 1286
Bpu10I CCTNAGC 2 cut(s) 587, 1267
Bpu1102I GCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 683
BpuMI CCSGG 3 cut(s) 366, 503, 1286
BsaBI GATNNNNATC 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 5 cut(s) 101, 364, 451, 621, 951
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 7 cut(s) 75, 76, 626, 860, 861, 1127, 1292
Bse118I RCCGGY 4 cut(s) 233, 312, 381, 598
Bse1I ACTGG 2 cut(s) 344, 842
Bse21I CCTNAGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 1059
BseDI CCNNGG 5 cut(s) 101, 364, 451, 621, 951
BseGI GGATG 2 cut(s) 93, 1171
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 7 cut(s) 75, 76, 626, 860, 861, 1127, 1292
BseMII CTCAG 6 cut(s) 88, 423, 510, 927, 1013, 1281
BseNI ACTGG 2 cut(s) 344, 842
BseRI GAGGAG 5 cut(s) 62, 101, 178, 265, 1269
BseSI GKGCMC 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 1296
BsgI GTGCAG 1 cut(s) 482
Bsh1236I CGCG 5 cut(s) 181, 394, 425, 453, 1143
BshFI GGCC 2 cut(s) 203, 959
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 3 cut(s) 320, 942, 950
BsiSI CCGG 7 cut(s) 234, 313, 366, 382, 503, 599, 1286
BslFI GGGAC 2 cut(s) 92, 401
BslI CCNNNNNNNGG 7 cut(s) 75, 76, 626, 860, 861, 1127, 1292
BsmAI GTCTC 3 cut(s) 744, 774, 855
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 2 cut(s) 92, 401
BsnI GGCC 2 cut(s) 203, 959
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 4 cut(s) 320, 942, 950, 1112
Bsp1720I GCTNAGC 1 cut(s) 936
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 2 cut(s) 203, 959
BspCNI CTCAG 6 cut(s) 87, 422, 511, 928, 1012, 1280
BspFNI CGCG 5 cut(s) 181, 394, 425, 453, 1143
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 6 cut(s) 175, 389, 390, 415, 631, 1284
BspMAI CTGCAG 1 cut(s) 1068
BspPI GGATC 8 cut(s) 168, 181, 260, 448, 612, 891, 1154, 1296
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 4 cut(s) 233, 312, 381, 598
BsrI ACTGG 2 cut(s) 344, 842
BssAI RCCGGY 4 cut(s) 233, 312, 381, 598
BssECI CCNNGG 5 cut(s) 101, 364, 451, 621, 951
BssNI GRCGYC 1 cut(s) 734
BssT1I CCWWGG 2 cut(s) 621, 951
Bst4CI ACNGT 5 cut(s) 418, 699, 764, 1083, 1098
Bst6I CTCTTC 2 cut(s) 148, 998
BstACI GRCGYC 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 8 cut(s) 379, 383, 494, 526, 600, 798, 894, 898
BstDEI CTNAG 7 cut(s) 74, 409, 519, 587, 936, 999, 1267
BstDSI CCRYGG 2 cut(s) 451, 621
BstF5I GGATG 2 cut(s) 93, 1171
BstFNI CGCG 5 cut(s) 181, 394, 425, 453, 1143
BstHHI GCGC 4 cut(s) 183, 396, 425, 571
BstMAI GTCTC 3 cut(s) 744, 774, 855
BstNSI RCATGY 3 cut(s) 154, 295, 896
BstSCI CCNGG 3 cut(s) 364, 501, 1284
BstSFI CTRYAG 1 cut(s) 1064
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 5 cut(s) 181, 394, 425, 453, 1143
BstX2I RGATCY 2 cut(s) 173, 1288
BstXI CCANNNNNNTGG 1 cut(s) 1124
BstYI RGATCY 2 cut(s) 173, 1288
Bsu36I CCTNAGG 1 cut(s) 74
BsuRI GGCC 2 cut(s) 203, 959
BtgI CCRYGG 2 cut(s) 451, 621
BtrI CACGTC 1 cut(s) 581
BtsCI GGATG 2 cut(s) 93, 1171
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 87, 808
Cac8I GCNNGC 8 cut(s) 379, 383, 494, 526, 600, 798, 894, 898
CaiI CAGNNNCTG 1 cut(s) 1274
CciI TCATGA 1 cut(s) 942
CfoI GCGC 4 cut(s) 183, 396, 425, 571
Cfr10I RCCGGY 4 cut(s) 233, 312, 381, 598
Cfr13I GGNCC 4 cut(s) 202, 307, 388, 1282
Cfr42I CCGCGG 1 cut(s) 454
CseI GACGC 1 cut(s) 1149
Csp6I GTAC 3 cut(s) 154, 640, 700
CviAII CATG 8 cut(s) 151, 292, 444, 622, 893, 943, 961, 971
CviQI GTAC 3 cut(s) 154, 640, 700
DdeI CTNAG 7 cut(s) 74, 409, 519, 587, 936, 999, 1267
DraIII CACNNNGTG 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 766
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 148, 998
Eam1105I GACNNNNNGTC 1 cut(s) 766
EarI CTCTTC 2 cut(s) 148, 998
EciI GGCGGA 3 cut(s) 299, 617, 1146
Ecl136II GAGCTC 2 cut(s) 940, 948
Eco130I CCWWGG 2 cut(s) 621, 951
Eco24I GRGCYC 3 cut(s) 942, 950, 1112
Eco47I GGWCC 3 cut(s) 307, 388, 1282
Eco53kI GAGCTC 2 cut(s) 940, 948
Eco81I CCTNAGG 1 cut(s) 74
EcoICRI GAGCTC 2 cut(s) 940, 948
EcoO109I RGGNCCY 2 cut(s) 202, 388
EcoT14I CCWWGG 2 cut(s) 621, 951
EcoT38I GRGCYC 3 cut(s) 942, 950, 1112
ErhI CCWWGG 2 cut(s) 621, 951
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 8 cut(s) 154, 295, 447, 625, 896, 946, 964, 974
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 92, 401
FatI CATG 8 cut(s) 150, 291, 443, 621, 892, 942, 960, 970
FauI CCCGC 6 cut(s) 125, 186, 329, 378, 399, 1136
FblI GTMKAC 1 cut(s) 1014
FokI GGATG 2 cut(s) 80, 1178
FriOI GRGCYC 3 cut(s) 942, 950, 1112
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 4 cut(s) 182, 395, 424, 570
GsaI CCCAGC 1 cut(s) 1300
HaeIII GGCC 2 cut(s) 203, 959
HapII CCGG 7 cut(s) 234, 313, 366, 382, 503, 599, 1286
HgaI GACGC 1 cut(s) 1149
HhaI GCGC 4 cut(s) 183, 396, 425, 571
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 8 cut(s) 154, 295, 447, 625, 896, 946, 964, 974
Hin6I GCGC 4 cut(s) 181, 394, 423, 569
HinP1I GCGC 4 cut(s) 181, 394, 423, 569
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 1192
HinfI GANTC 4 cut(s) 245, 480, 751, 1277
HpaII CCGG 7 cut(s) 234, 313, 366, 382, 503, 599, 1286
HphI GGTGA 2 cut(s) 106, 1086
Hpy166II GTNNAC 5 cut(s) 318, 823, 1015, 1101, 1263
Hpy188I TCNGA 7 cut(s) 148, 241, 250, 280, 1002, 1107, 1282
Hpy188III TCNNGA 5 cut(s) 61, 943, 1182, 1211, 1312
Hpy8I GTNNAC 5 cut(s) 318, 823, 1015, 1101, 1263
Hpy99I CGWCG 5 cut(s) 20, 260, 736, 739, 820
HpyAV CCTTC 2 cut(s) 367, 547
HpyCH4III ACNGT 5 cut(s) 418, 699, 764, 1083, 1098
HpyCH4IV ACGT 2 cut(s) 580, 734
HpyCH4V TGCA 9 cut(s) 228, 318, 447, 499, 528, 546, 892, 896, 1066
HpyF3I CTNAG 7 cut(s) 74, 409, 519, 587, 936, 999, 1267
HpySE526I ACGT 2 cut(s) 580, 734
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 8 cut(s) 154, 295, 447, 625, 896, 946, 964, 974
HspAI GCGC 4 cut(s) 181, 394, 423, 569
KflI GGGWCCC 1 cut(s) 388
KroI GCCGGC 2 cut(s) 381, 598
KroNI GCCGGC 2 cut(s) 383, 600
KspI CCGCGG 1 cut(s) 454
LmnI GCTCC 3 cut(s) 54, 114, 953
MaeII ACGT 2 cut(s) 580, 734
MboII GAAGA 3 cut(s) 135, 550, 1015
MflI RGATCY 2 cut(s) 173, 1288
MhlI GDGCHC 4 cut(s) 320, 942, 950, 1112
MluCI AATT 9 cut(s) 28, 134, 215, 467, 835, 965, 1039, 1150, 1171
MlyI GAGTC 4 cut(s) 239, 489, 745, 1271
MmeI TCCRAC 3 cut(s) 303, 738, 767
MreI CGCCGGCG 1 cut(s) 381
MroNI GCCGGC 2 cut(s) 381, 598
MseI TTAA 2 cut(s) 1248, 1302
MspA1I CMGCKG 8 cut(s) 164, 194, 453, 462, 725, 983, 989, 1274
MspI CCGG 7 cut(s) 234, 313, 366, 382, 503, 599, 1286
MspR9I CCNGG 3 cut(s) 366, 503, 1286
MvnI CGCG 5 cut(s) 181, 394, 425, 453, 1143
NaeI GCCGGC 2 cut(s) 383, 600
NciI CCSGG 3 cut(s) 366, 503, 1286
NcoI CCATGG 1 cut(s) 621
NgoMIV GCCGGC 2 cut(s) 381, 598
NlaIII CATG 8 cut(s) 154, 295, 447, 625, 896, 946, 964, 974
NlaIV GGNNCC 6 cut(s) 175, 389, 390, 415, 631, 1284
NsbI TGCGCA 1 cut(s) 570
NspI RCATGY 3 cut(s) 154, 295, 896
NspV TTCGAA 1 cut(s) 683
PaeI GCATGC 1 cut(s) 896
PagI TCATGA 1 cut(s) 942
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 261
PdiI GCCGGC 2 cut(s) 383, 600
PflFI GACNNNGTC 2 cut(s) 260, 736
PleI GAGTC 4 cut(s) 239, 488, 745, 1271
PpsI GAGTC 4 cut(s) 239, 488, 745, 1271
PpuMI RGGWCCY 1 cut(s) 388
PscI ACATGT 1 cut(s) 150
Psp124BI GAGCTC 2 cut(s) 942, 950
Psp5II RGGWCCY 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 1296
PspN4I GGNNCC 6 cut(s) 175, 389, 390, 415, 631, 1284
PspPI GGNCC 4 cut(s) 202, 307, 388, 1282
PspPPI RGGWCCY 1 cut(s) 388
PstI CTGCAG 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 1274
PsuI RGATCY 2 cut(s) 173, 1288
PsyI GACNNNGTC 2 cut(s) 260, 736
PvuII CAGCTG 2 cut(s) 164, 462
RsaI GTAC 3 cut(s) 155, 641, 701
RsaNI GTAC 3 cut(s) 154, 640, 700
SacI GAGCTC 2 cut(s) 942, 950
SacII CCGCGG 1 cut(s) 454
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 2 cut(s) 1248, 1302
Sau96I GGNCC 4 cut(s) 202, 307, 388, 1282
ScaI AGTACT 1 cut(s) 701
SchI GAGTC 4 cut(s) 239, 489, 745, 1271
ScrFI CCNGG 3 cut(s) 366, 503, 1286
SduI GDGCHC 4 cut(s) 320, 942, 950, 1112
SfcI CTRYAG 1 cut(s) 1064
Sfr303I CCGCGG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 2 cut(s) 312, 381
SgrBI CCGCGG 1 cut(s) 454
SinI GGWCC 3 cut(s) 307, 388, 1282
SphI GCATGC 1 cut(s) 896
Sse9I AATT 9 cut(s) 28, 134, 215, 467, 835, 965, 1039, 1150, 1171
SstI GAGCTC 2 cut(s) 942, 950
StyD4I CCNGG 3 cut(s) 364, 501, 1284
StyI CCWWGG 2 cut(s) 621, 951
TaaI ACNGT 5 cut(s) 418, 699, 764, 1083, 1098
TaiI ACGT 2 cut(s) 583, 737
TaqI TCGA 4 cut(s) 264, 683, 749, 1014
TasI AATT 9 cut(s) 28, 134, 215, 467, 835, 965, 1039, 1150, 1171
TatI WGTACW 1 cut(s) 699
Tru1I TTAA 2 cut(s) 1248, 1302
Tru9I TTAA 2 cut(s) 1248, 1302
TscAI CASTG 2 cut(s) 94, 815
TspDTI ATGAA 6 cut(s) 821, 977, 987, 1011, 1052, 1182
TspGWI ACGGA 2 cut(s) 492, 1266
TspRI CASTG 2 cut(s) 94, 815
Tth111I GACNNNGTC 2 cut(s) 260, 736
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 3 cut(s) 307, 388, 1282
XapI RAATTY 4 cut(s) 134, 215, 467, 965
XceI RCATGY 3 cut(s) 154, 295, 896
XmiI GTMKAC 1 cut(s) 1014
ZraI GACGTC 1 cut(s) 735
ZrmI AGTACT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.