Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014049

Physical Location & Seq

Genomic Coordinates Forward (+)

49346497 .. 49348032

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGCAGTGTGTGCGCCGAGCAGCACAAGTTTCACACCTCCCACCACCTCCTTTCATCCAAGAAAACCCACAACCTCCTCAGAGAAGTAGACATCCCACCGAGGAAACTCCTCACCCGCCGCACCGCCGCCCACCAAGACTTATCCTTCTCCCACGACATGTACGGCACCACCGACTCTCCCCGCTTCTCTGCTTCCGACGAGGCCCTCCTTCGCAAGTTCCTCCCCTACAACACCGGTGCCTCTGACGACGACGAAGACGACGCCTCCGACGACCCCTACTCCTCTGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGCAGCCACGACTGGACCGACTGCCCTTTTGCCCATCCCGGGGAAAAGGCCAGGCGCCGTGATCCCCGCCGCTATCACTACTCCGGCACAGTCTGTGCCGACTATCGCCGCGGAGGGTGTAGCCGTGGCGACAGCTGTGAGTTCGCACACGGTGTTTTCGAGTGCTGGCTGCATCCGGCAAGGTACAGAACCGAGGCATGCAAAGACGGCAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCACACGCCACGTCAGCTCCGCATCTTGCCTGTGAATCACTCACGGAGCTCTTCACCTGATGAAGTGATCTCTCCTAGCTCGGGTTCTTGCAAGAAGAGTATCAAGTACCTGAACTCGGCCAACTCGCCGAGTTCGACTCACTGCTGTTTGTTCTGCCGTTCTGTGACTTCTTCCCCGACTTCTACTCTGCTCGGTATGTCGCATCTGTCGCCGCCGTTGTCGCCTATGTCTCCCTACGGCGAATCCAAGTGTCACTTCTCTAGCGGATTGGATCAGATGCATGCTAGCGCAGCTGGGATGCTGAGCTACAAAGATGTGCTTTCAGAGCTCATGACCTCTTTGGAGGCCATGAAGTTCAATAACATGGAAGCAACTTCTTCACCTGTTTCATCACCAATCAGTTCTGCTGCGGCTAATTACCAGAATACCCCGTTGGTTGACGTTTCTTCATACAATGCTTTTGCTGCTGCTGCTGAAGATCAGCAGCAACAGTTCATTCTTTCACCATCTACTCCAAGCCCTTCATCAGCAGGAATTAATTTTTTCAGTCGCGGTAGTAGTACTGGAAATTGCTCGAGGAAAAGCTTGGTCTTCGATGAGCAGAACAATGCCACTGAAATTAATGGAGGATGTGGCCCCGACCCGGATCTTGGATGGGTTAACGATCTCTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010029 GO:0010187 GO:0010468 GO:0010494 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1900140 GO:1903506 GO:1990904 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH zf-CCCH_2

Protein Analysis

418

Amino Acids

46.22

Weight (kDa)

7.57

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_AtC3H23	PF25512	98 - 131	4.9e-20	AtC3H23-like, CCCH zinc finger
zf-CCCH	PF00642	142 - 163	7.5e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03790 AT5G44260
fragaria_vesca	FvH4_5g18230
malus_domestica	MD09G1243500.v1.1 MD17G1235500.v1.1
prunus_persica	Prupe.3G133500_v2.0.a1
pyrus_communis	pycom09g16210
rosa_chinensis	RchiOBHm_Chr2g0127531
rosa_laevigata	RLG00000018959
rosa_multiflora	Rmu_sc0004744.1_g000012
rosa_roxburghii	Rroxscaffold_2G00116460
rosa_rugosa	Rorug02G0273700
rosa_samantha	Rh2AG325500 Rh2BG335000 Rh2CG312900 Rh2DG352600
rosa_wichuraiana	Rw2G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	167, 239, 390
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	447, 1131
AccIII	TCCGGA	1 cut(s)	297
AclWI	GGATC	3 cut(s)	392, 858, 1233
AcoI	YGGCCR	1 cut(s)	696
AcuI	CTGAAG	1 cut(s)	1074
AcyI	GRCGYC	2 cut(s)	264, 391
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	4 cut(s)	164, 521, 686, 1141
AfiI	CCNNNNNNNGG	6 cut(s)	375, 376, 659, 694, 1222, 1229
AflIII	ACRYGT	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	313, 937
AjiI	CACGTC	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	4 cut(s)	818, 850, 995, 1027
AluBI	AGCT	8 cut(s)	471, 595, 627, 657, 872, 885, 907, 1164
AluI	AGCT	8 cut(s)	471, 595, 627, 657, 872, 885, 907, 1164
Alw21I	GWGCWC	2 cut(s)	629, 909
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	3 cut(s)	392, 858, 1233
Ama87I	CYCGRG	3 cut(s)	374, 658, 1153
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	5 cut(s)	204, 384, 696, 924, 1213
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	2 cut(s)	1116, 1200
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	17, 393, 869
AspS9I	GGNCC	4 cut(s)	205, 316, 351, 1214
AsuC2I	CCSGG	3 cut(s)	375, 376, 1223
AsuHPI	GGTGA	5 cut(s)	106, 624, 951, 963, 1074
AsuNHI	GCTAGC	1 cut(s)	863
AvaI	CYCGRG	3 cut(s)	374, 658, 1153
AvaII	GGWCC	2 cut(s)	316, 351
BanI	GGYRCC	3 cut(s)	167, 239, 390
BanII	GRGCYC	2 cut(s)	629, 909
BbsI	GAAGAC	2 cut(s)	264, 1162
Bbv12I	GWGCWC	2 cut(s)	629, 909
BccI	CCATC	3 cut(s)	378, 1093, 1227
BceAI	ACGGC	7 cut(s)	181, 378, 444, 559, 720, 778, 832
BciT130I	CCWGG	1 cut(s)	388
BcnI	CCSGG	3 cut(s)	375, 376, 1223
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	3 cut(s)	654, 840, 864
BfoI	RGCGCY	1 cut(s)	394
BlpI	GCTNAGC	1 cut(s)	881
BmcAI	AGTACT	1 cut(s)	1141
Bme1390I	CCNGG	4 cut(s)	375, 376, 388, 1223
Bme18I	GGWCC	2 cut(s)	316, 351
BmeT110I	CYCGRG	3 cut(s)	374, 658, 1153
BmgBI	CACGTC	1 cut(s)	590
BmgT120I	GGNCC	4 cut(s)	205, 316, 351, 1214
BmiI	GGNNCC	4 cut(s)	169, 241, 392, 1216
BmrFI	CCNGG	4 cut(s)	375, 376, 388, 1223
BmsI	GCATC	5 cut(s)	517, 609, 790, 846, 867
BmtI	GCTAGC	1 cut(s)	867
BpiI	GAAGAC	2 cut(s)	264, 1162
BplI	GAGNNNNNCTC	2 cut(s)	700, 732
Bpu1102I	GCTNAGC	1 cut(s)	881
BpuMI	CCSGG	3 cut(s)	375, 376, 1223
BsaHI	GRCGYC	2 cut(s)	264, 391
BsaJI	CCNNGG	6 cut(s)	101, 374, 375, 445, 460, 528
BsaWI	WCCGGW	2 cut(s)	236, 297
BsaXI	ACNNNNNCTCC	8 cut(s)	163, 193, 251, 266, 281, 296, 579, 609
Bsc4I	CCNNNNNNNGG	6 cut(s)	375, 376, 659, 694, 1222, 1229
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	353, 1147
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	6 cut(s)	101, 374, 375, 445, 460, 528
BseGI	GGATG	8 cut(s)	56, 93, 306, 370, 508, 882, 1214, 1238
BseLI	CCNNNNNNNGG	6 cut(s)	375, 376, 659, 694, 1222, 1229
BseMII	CTCAG	2 cut(s)	94, 872
BseNI	ACTGG	2 cut(s)	353, 1147
BseRI	GAGGAG	3 cut(s)	68, 101, 274
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	447, 1131
BshFI	GGCC	5 cut(s)	206, 386, 698, 926, 1215
BshNI	GGYRCC	3 cut(s)	167, 239, 390
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	629, 909
BsiHKCI	CYCGRG	3 cut(s)	374, 658, 1153
BsiSI	CCGG	6 cut(s)	237, 298, 375, 420, 512, 1223
BslI	CCNNNNNNNGG	6 cut(s)	375, 376, 659, 694, 1222, 1229
BsmAI	GTCTC	1 cut(s)	813
BsnI	GGCC	5 cut(s)	206, 386, 698, 926, 1215
BsoBI	CYCGRG	3 cut(s)	374, 658, 1153
Bsp1286I	GDGCHC	2 cut(s)	629, 909
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
Bsp1720I	GCTNAGC	1 cut(s)	881
BspANI	GGCC	5 cut(s)	206, 386, 698, 926, 1215
BspCNI	CTCAG	2 cut(s)	93, 873
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	447, 1131
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	4 cut(s)	169, 241, 392, 1216
BspOI	GCTAGC	1 cut(s)	867
BspPI	GGATC	3 cut(s)	392, 858, 1233
BspQI	GCTCTTC	1 cut(s)	634
BspT107I	GGYRCC	3 cut(s)	167, 239, 390
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	353, 1147
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	6 cut(s)	101, 374, 375, 445, 460, 528
BssMI	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
BssNI	GRCGYC	2 cut(s)	264, 391
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	4 cut(s)	427, 488, 554, 1071
Bst6I	CTCTTC	2 cut(s)	634, 668
BstACI	GRCGYC	2 cut(s)	264, 391
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	503, 535, 861, 865
BstDEI	CTNAG	2 cut(s)	80, 881
BstDSI	CCRYGG	2 cut(s)	445, 460
BstF5I	GGATG	8 cut(s)	56, 93, 306, 370, 508, 882, 1214, 1238
BstFNI	CGCG	2 cut(s)	447, 1131
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	3 cut(s)	17, 393, 869
BstKTI	GATC	6 cut(s)	400, 648, 853, 1060, 1228, 1246
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	3 cut(s)	163, 537, 863
BstSCI	CCNGG	4 cut(s)	373, 374, 386, 1221
BstUI	CGCG	2 cut(s)	447, 1131
BstV2I	GAAGAC	2 cut(s)	264, 1162
BstX2I	RGATCY	1 cut(s)	1225
BstYI	RGATCY	1 cut(s)	1225
BsuRI	GGCC	5 cut(s)	206, 386, 698, 926, 1215
BtgI	CCRYGG	2 cut(s)	445, 460
BtrI	CACGTC	1 cut(s)	590
BtsCI	GGATG	8 cut(s)	56, 93, 306, 370, 508, 882, 1214, 1238
BtsI	GCAGTG	2 cut(s)	13, 718
BtsIMutI	CAGTG	3 cut(s)	13, 718, 1191
Cac8I	GCNNGC	4 cut(s)	503, 535, 861, 865
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	3 cut(s)	17, 393, 869
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	205, 316, 351, 1214
Cfr42I	CCGCGG	1 cut(s)	448
Cfr9I	CCCGGG	1 cut(s)	374
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	4 cut(s)	163, 520, 685, 1140
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	6 cut(s)	160, 534, 860, 910, 928, 943
CviQI	GTAC	4 cut(s)	163, 520, 685, 1140
DdeI	CTNAG	2 cut(s)	80, 881
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	6 cut(s)	399, 647, 852, 1059, 1227, 1245
DpnII	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
DraIII	CACNNNGTG	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	634, 668
EarI	CTCTTC	2 cut(s)	634, 668
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	2 cut(s)	627, 907
Eco24I	GRGCYC	2 cut(s)	629, 909
Eco47I	GGWCC	2 cut(s)	316, 351
Eco53kI	GAGCTC	2 cut(s)	627, 907
Eco57I	CTGAAG	1 cut(s)	1074
Eco88I	CYCGRG	3 cut(s)	374, 658, 1153
EcoICRI	GAGCTC	2 cut(s)	627, 907
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	2 cut(s)	629, 909
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
FaeI	CATG	6 cut(s)	163, 537, 863, 913, 931, 946
FaiI	YATR	9 cut(s)	161, 535, 776, 806, 861, 911, 929, 944, 1030
FalI	AAGNNNNNCTT	4 cut(s)	818, 850, 882, 914
FatI	CATG	6 cut(s)	159, 533, 859, 909, 927, 942
FauI	CCCGC	4 cut(s)	125, 191, 338, 410
FblI	GTMKAC	1 cut(s)	90
FokI	GGATG	8 cut(s)	43, 80, 313, 357, 495, 889, 1221, 1245
FriOI	GRGCYC	2 cut(s)	629, 909
FspBI	CTAG	3 cut(s)	654, 840, 864
GlaI	GCGC	3 cut(s)	16, 392, 868
GsaI	CCCAGC	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	5 cut(s)	206, 386, 698, 926, 1215
HapII	CCGG	6 cut(s)	237, 298, 375, 420, 512, 1223
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	3 cut(s)	17, 393, 869
Hin1I	GRCGYC	2 cut(s)	264, 391
Hin1II	CATG	6 cut(s)	163, 537, 863, 913, 931, 946
Hin6I	GCGC	3 cut(s)	15, 391, 867
HinP1I	GCGC	3 cut(s)	15, 391, 867
HincII	GTYRAC	2 cut(s)	1018, 1240
HindII	GTYRAC	2 cut(s)	1018, 1240
HindIII	AAGCTT	1 cut(s)	1162
HinfI	GANTC	4 cut(s)	176, 613, 715, 821
HpaI	GTTAAC	1 cut(s)	1240
HpaII	CCGG	6 cut(s)	237, 298, 375, 420, 512, 1223
HphI	GGTGA	5 cut(s)	106, 624, 951, 963, 1074
Hpy166II	GTNNAC	3 cut(s)	91, 1018, 1240
Hpy188I	TCNGA	7 cut(s)	83, 199, 247, 271, 289, 855, 904
Hpy188III	TCNNGA	3 cut(s)	298, 910, 1249
Hpy8I	GTNNAC	3 cut(s)	91, 1018, 1240
Hpy99I	CGWCG	5 cut(s)	203, 254, 257, 266, 275
HpyAV	CCTTC	4 cut(s)	157, 221, 556, 1110
HpyCH4III	ACNGT	4 cut(s)	427, 488, 554, 1071
HpyCH4IV	ACGT	2 cut(s)	589, 1020
HpyCH4V	TGCA	5 cut(s)	327, 508, 537, 669, 859
HpyF3I	CTNAG	2 cut(s)	80, 881
HpySE526I	ACGT	2 cut(s)	589, 1020
Hsp92I	GRCGYC	2 cut(s)	264, 391
Hsp92II	CATG	6 cut(s)	163, 537, 863, 913, 931, 946
HspAI	GCGC	3 cut(s)	15, 391, 867
KasI	GGCGCC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	1240
KspI	CCGCGG	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	600, 624
LweI	GCATC	5 cut(s)	517, 609, 790, 846, 867
MaeI	CTAG	3 cut(s)	654, 840, 864
MaeII	ACGT	2 cut(s)	589, 1020
MaeIII	GTNAC	2 cut(s)	742, 830
MalI	GATC	6 cut(s)	399, 647, 852, 1059, 1227, 1245
MboI	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
MboII	GAAGA	8 cut(s)	269, 621, 685, 741, 948, 1017, 1067, 1162
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	2 cut(s)	629, 909
MluCI	AATT	5 cut(s)	994, 1113, 1117, 1147, 1197
Mly113I	GGCGCC	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	170, 709
MmeI	TCCRAC	2 cut(s)	222, 294
Mph1103I	ATGCAT	1 cut(s)	861
MroI	TCCGGA	1 cut(s)	297
MseI	TTAA	3 cut(s)	1116, 1200, 1239
MspA1I	CMGCKG	4 cut(s)	324, 447, 471, 872
MspI	CCGG	6 cut(s)	237, 298, 375, 420, 512, 1223
MspR9I	CCNGG	4 cut(s)	375, 376, 388, 1223
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	2 cut(s)	447, 1131
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	3 cut(s)	375, 376, 1223
NdeII	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
NheI	GCTAGC	1 cut(s)	863
NlaIII	CATG	6 cut(s)	163, 537, 863, 913, 931, 946
NlaIV	GGNNCC	4 cut(s)	169, 241, 392, 1216
NmeAIII	GCCGAG	3 cut(s)	43, 674, 732
NmuCI	GTSAC	2 cut(s)	742, 830
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	3 cut(s)	163, 537, 863
PaeI	GCATGC	2 cut(s)	537, 863
PaeR7I	CTCGAG	1 cut(s)	1153
PagI	TCATGA	1 cut(s)	909
PciI	ACATGT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	7 cut(s)	171, 258, 267, 270, 351, 492, 710
PfeI	GAWTC	2 cut(s)	613, 821
PinAI	ACCGGT	1 cut(s)	236
PleI	GAGTC	2 cut(s)	170, 709
PluTI	GGCGCC	1 cut(s)	394
PpsI	GAGTC	2 cut(s)	170, 709
PscI	ACATGT	1 cut(s)	159
PshBI	ATTAAT	2 cut(s)	1116, 1200
Psp124BI	GAGCTC	2 cut(s)	629, 909
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	4 cut(s)	169, 241, 392, 1216
PspPI	GGNCC	4 cut(s)	205, 316, 351, 1214
PspXI	VCTCGAGB	1 cut(s)	1153
PsuI	RGATCY	1 cut(s)	1225
PvuII	CAGCTG	2 cut(s)	471, 872
RsaI	GTAC	4 cut(s)	164, 521, 686, 1141
RsaNI	GTAC	4 cut(s)	163, 520, 685, 1140
SacI	GAGCTC	2 cut(s)	629, 909
SacII	CCGCGG	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	1116, 1200, 1239
Sau3AI	GATC	6 cut(s)	397, 645, 850, 1057, 1225, 1243
Sau96I	GGNCC	4 cut(s)	205, 316, 351, 1214
ScaI	AGTACT	1 cut(s)	1141
SchI	GAGTC	2 cut(s)	170, 709
ScrFI	CCNGG	4 cut(s)	375, 376, 388, 1223
SduI	GDGCHC	2 cut(s)	629, 909
SfaNI	GCATC	5 cut(s)	517, 609, 790, 846, 867
SfoI	GGCGCC	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	1153
Sfr303I	CCGCGG	1 cut(s)	448
SgrAI	CRCCGGYG	1 cut(s)	236
SgrBI	CCGCGG	1 cut(s)	448
SinI	GGWCC	2 cut(s)	316, 351
SlaI	CTCGAG	1 cut(s)	1153
SmaI	CCCGGG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	1153
SmoI	CTYRAG	1 cut(s)	1153
SphI	GCATGC	2 cut(s)	537, 863
Sse9I	AATT	5 cut(s)	994, 1113, 1117, 1147, 1197
SspDI	GGCGCC	1 cut(s)	390
SspMI	CTAG	3 cut(s)	654, 840, 864
SstI	GAGCTC	2 cut(s)	629, 909
StyD4I	CCNGG	4 cut(s)	373, 374, 386, 1221
TaaI	ACNGT	4 cut(s)	427, 488, 554, 1071
TaiI	ACGT	2 cut(s)	592, 1023
TaqI	TCGA	5 cut(s)	306, 495, 713, 1154, 1173
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	5 cut(s)	994, 1113, 1117, 1147, 1197
TatI	WGTACW	1 cut(s)	1139
TauI	GCSGC	8 cut(s)	123, 131, 324, 339, 408, 447, 793, 992
TfiI	GAWTC	2 cut(s)	613, 821
Tru1I	TTAA	3 cut(s)	1116, 1200, 1239
Tru9I	TTAA	3 cut(s)	1116, 1200, 1239
TscAI	CASTG	3 cut(s)	13, 725, 1198
TseFI	GTSAC	2 cut(s)	742, 830
Tsp45I	GTSAC	2 cut(s)	742, 830
TspDTI	ATGAA	7 cut(s)	45, 654, 944, 957, 1017, 1063, 1092
TspGWI	ACGGA	1 cut(s)	637
TspMI	CCCGGG	1 cut(s)	374
TspRI	CASTG	3 cut(s)	13, 725, 1198
VpaK11BI	GGWCC	2 cut(s)	316, 351
VspI	ATTAAT	2 cut(s)	1116, 1200
XceI	RCATGY	3 cut(s)	163, 537, 863
XhoI	CTCGAG	1 cut(s)	1153
XmaI	CCCGGG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	3 cut(s)	654, 840, 864
ZrmI	AGTACT	1 cut(s)	1141
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.