Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014049

Physical Location & Seq

Genomic Coordinates Reverse (-)

29260285 .. 29260686

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0273700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTTGAAGAATTTGGTTTTGGTTTCCATGGTGACACTGATCGCATCCCTCATACTGAGTGCAAGTAATGCTACTGCTACGAGGAAAATTTCTGACAAAACGAGCGGTGAAGGCGAAGGCGGGCTAGTGGAATGCGGAAATGCGCTGGTGGAGCTGAAATCTTGCTCGCAAGAGATTGTTGTGTATTTCCTGAATGGGAAGGCTAACATTGATCCAGACTGTTGCAAAGCTATCGCCATCATTACACGTCACTGCTGGCCTGCAATGCTTACTTCCCTTGGCTTCACTGCAGAACAAGGTGACATCTTACGAGGCTACTGTGATGCTGCGGCTGCTGTGACTACTACTGCTCCTGCTGCAGCGCCACTTGCGCGTACAACACCTCTTACCCGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010029 GO:0010187 GO:0010468 GO:0010494 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1900140 GO:1903506 GO:1990904 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH zf-CCCH_2

Protein Analysis

133

Amino Acids

13.83

Weight (kDa)

6.54

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prolamin_like	PF05617	45 - 109	7.5e-18	Prolamin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03790 AT5G44260
fragaria_vesca	FvH4_5g18230
malus_domestica	MD09G1243500.v1.1 MD17G1235500.v1.1
prunus_persica	Prupe.3G133500_v2.0.a1
pyrus_communis	pycom09g16210
rosa_chinensis	RchiOBHm_Chr2g0127531
rosa_laevigata	RLG00000018959
rosa_multiflora	Rmu_sc0004744.1_g000012
rosa_roxburghii	Rroxscaffold_2G00116460
rosa_rugosa	Rorug02G0273700
rosa_samantha	Rh2AG325500 Rh2BG335000 Rh2CG312900 Rh2DG352600
rosa_wichuraiana	Rw2G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	1 cut(s)	376
AciI	CCGC	4 cut(s)	108, 123, 138, 332
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	13, 90
AfaI	GTAC	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	157, 233
AluI	AGCT	2 cut(s)	157, 233
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	4 cut(s)	329, 335, 359, 362
ApoI	RAATTY	2 cut(s)	13, 90
AspLEI	GCGC	3 cut(s)	148, 367, 376
AsuHPI	GGTGA	3 cut(s)	46, 122, 314
BbvI	GCAGC	4 cut(s)	316, 322, 346, 374
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	291, 360
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	5 cut(s)	330, 333, 336, 360, 363
BlsI	GCNGC	5 cut(s)	331, 334, 337, 361, 364
BmgBI	CACGTC	1 cut(s)	251
BmsI	GCATC	2 cut(s)	56, 316
BsaJI	CCNNGG	2 cut(s)	30, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse3DI	GCAATG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	30, 280
BseGI	GGATG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	50
BseXI	GCAGC	4 cut(s)	316, 322, 346, 374
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	42, 214
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	4 cut(s)	108, 123, 138, 332
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	376
BspMAI	CTGCAG	2 cut(s)	295, 364
BspPI	GGATC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	30, 280
BssMI	GATC	2 cut(s)	42, 214
BssT1I	CCWWGG	2 cut(s)	30, 280
Bst4CI	ACNGT	2 cut(s)	224, 323
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	125, 170, 260, 264
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	3 cut(s)	148, 367, 376
BstKTI	GATC	2 cut(s)	45, 217
BstMBI	GATC	2 cut(s)	42, 214
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 114, 154, 268, 335, 359, 371, 373
BstSFI	CTRYAG	2 cut(s)	291, 360
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	316, 322, 346, 374
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	2 cut(s)	253, 288
BtsIMutI	CAGTG	3 cut(s)	38, 253, 288
Cac8I	GCNNGC	4 cut(s)	125, 170, 260, 264
CfoI	GCGC	3 cut(s)	148, 367, 376
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	9 cut(s)	5, 127, 157, 206, 233, 262, 285, 318, 335
CviKI_1	RGCY	9 cut(s)	5, 127, 157, 206, 233, 262, 285, 318, 335
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	44, 216
DpnII	GATC	2 cut(s)	42, 214
Eco130I	CCWWGG	2 cut(s)	30, 280
EcoT14I	CCWWGG	2 cut(s)	30, 280
ErhI	CCWWGG	2 cut(s)	30, 280
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 56
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	5 cut(s)	330, 333, 336, 360, 363
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	330, 333, 336, 360, 363
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	3 cut(s)	147, 366, 375
GluI	GCNGC	5 cut(s)	330, 333, 336, 360, 363
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	262
HhaI	GCGC	3 cut(s)	148, 367, 376
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	3 cut(s)	146, 365, 374
HinP1I	GCGC	3 cut(s)	146, 365, 374
HphI	GGTGA	3 cut(s)	46, 122, 314
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	193, 218
HpyAV	CCTTC	3 cut(s)	107, 113, 196
HpyCH4III	ACNGT	2 cut(s)	224, 323
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	5 cut(s)	65, 228, 266, 293, 362
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 114, 154, 268, 335, 359, 371, 373
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	3 cut(s)	146, 365, 374
Kzo9I	GATC	2 cut(s)	42, 214
LmnI	GCTCC	2 cut(s)	154, 358
LpnPI	CCDG	6 cut(s)	134, 206, 231, 244, 276, 369
Lsp1109I	GCAGC	4 cut(s)	316, 322, 346, 374
LweI	GCATC	2 cut(s)	56, 316
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	34, 251, 302, 340
MalI	GATC	2 cut(s)	44, 216
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	2 cut(s)	42, 214
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	2 cut(s)	13, 90
MnlI	CCTC	4 cut(s)	62, 78, 308, 396
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	8 cut(s)	71, 114, 154, 268, 335, 359, 371, 373
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	42, 214
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	4 cut(s)	34, 251, 302, 340
PctI	GAATGC	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	331, 334, 337, 361, 364
PstI	CTGCAG	2 cut(s)	295, 364
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SatI	GCNGC	5 cut(s)	330, 333, 336, 360, 363
Sau3AI	GATC	2 cut(s)	42, 214
SetI	ASST	5 cut(s)	159, 235, 253, 304, 388
SfaNI	GCATC	2 cut(s)	56, 316
SfcI	CTRYAG	2 cut(s)	291, 360
Sse9I	AATT	2 cut(s)	13, 90
SsiI	CCGC	4 cut(s)	108, 123, 138, 332
SspMI	CTAG	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	30, 280
TaaI	ACNGT	2 cut(s)	224, 323
TaiI	ACGT	1 cut(s)	253
TasI	AATT	2 cut(s)	13, 90
TauI	GCSGC	1 cut(s)	335
TscAI	CASTG	3 cut(s)	45, 260, 295
TseFI	GTSAC	4 cut(s)	34, 251, 302, 340
TseI	GCWGC	4 cut(s)	329, 335, 359, 362
Tsp45I	GTSAC	4 cut(s)	34, 251, 302, 340
TspRI	CASTG	3 cut(s)	45, 260, 295
XapI	RAATTY	2 cut(s)	13, 90
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.