AT1G04190

TPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012537
Physical Location & Seq
Reverse (-)
1106354 .. 1108725
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04190.1

Sequence Viewer

Length: 987 bp
ATGGCCGAGAAAGCAGGCAAGGCAACGAATGGTGGAGAAGCAGAGAAATCTCTAAAGGAAAAAGGAAATGAGTTCTTCAAAGCTGGCAACTTTCTTAAAGCCGCAGCTCTCTATACTCAAGCCATCAAGCTCGATCCTTCTAACGCTACTCTTTACAGTAACCGAGCTGCTGCATTTTTGAGTCTAGTTAAGCTTAGCAAGGCCTTAGCAGATGCTGAGACTACCATTAAACTCAACCCTCAGTGGGAGAAGGGGTACTTCAGGAAAGGTTGTGTGCTTGAAGCCATGGAAAAATACGAAGATGCTTTGGCTGCATTTGAAATGGCTCTGCAGTACAACCCACAGAGCACAGAAGTTTCTAGAAAGATCAAGAGGCTCGGTCAGTTGCAGAAGGAGAAACAGAGAGCTCAAGAACTTGAGAATTTAAGATCTAATGTTGACATGGCCAAGCATCTTGAAAGTTTTAAATCTGAAATGTCTGAAAACTATGGAACTGAAGAGTGTTGGAAAGAGATGTTTTCTTTTATTGTTGAGACTATGGAAACAGCTGTGAAGTCGTGGCACGAGACATCTAAAGTCGATACTAGAGTCTATTTCCTTCTTGACAAAGAGAAAACACAAACAGACAAGTACGCACCAGCTGTCAACATCGATAAGGCTTTTCAGTCTCCGGACACGCACAGTAACTGCTTTACGTATCTGAGGCAATACGCAGAAGAGTCATTTTCCAAGGCTGCTTGCTTAGTAACACCAAAGAGTAGTATATCCTACCCACAGGTGTGGAAAGGTGTAGGCTCAAGGAAATGGAAACTCGGACCAAATGATGGAATCTTTGTTCAGTTTGAATCTCCCTCTCTTCGGAAAGTTTGGTTCATATCTAGCTCGAAAGAAAAGGGACAAACTTTGTGCAGGGAACCGCAAGCTCTGGATATCGGCGCACATGAGATTCTCCCTCGCATTTTCAAGGAGAAATCGAAAAGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

328

Amino Acids

37.18

Weight (kDa)

8.92

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 16 - 48 8.7e-06 Tetratricopeptide repeat
TPR_BSK1_C PF25575 17 - 85 3.8e-06 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_16 PF13432 21 - 77 8e-07 Tetratricopeptide repeat
TPR_11 PF13414 22 - 61 1.4e-09 TPR repeat
TPR_1 PF00515 84 - 115 6.2e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 2 cut(s) 102, 917
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 2 cut(s) 3, 444
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 2 cut(s) 244, 516
AfaI GTAC 3 cut(s) 257, 335, 632
AfiI CCNNNNNNNGG 3 cut(s) 244, 824, 858
AgsI TTSAA 6 cut(s) 79, 281, 320, 458, 845, 964
AleI CACNNNNGTG 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
Alw21I GWGCWC 2 cut(s) 350, 409
Alw26I GTCTC 4 cut(s) 212, 527, 560, 672
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 2 cut(s) 215, 687
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 3 cut(s) 3, 201, 444
ApeKI GCWGC 5 cut(s) 104, 167, 170, 311, 734
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 1 cut(s) 938
AspS9I GGNCC 1 cut(s) 815
AvaII GGWCC 1 cut(s) 815
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BalI TGGCCA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 409
BauI CACGAG 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 350, 409
BbvI GCAGC 5 cut(s) 116, 154, 157, 298, 721
BccI CCATC 2 cut(s) 131, 818
BcoDI GTCTC 4 cut(s) 212, 527, 560, 672
BfaI CTAG 4 cut(s) 185, 360, 585, 879
BfmI CTRYAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 428
BisI GCNGC 6 cut(s) 102, 105, 168, 171, 312, 735
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 6 cut(s) 103, 106, 169, 172, 313, 736
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 1 cut(s) 915
BmsI GCATC 3 cut(s) 202, 292, 460
Bpu10I CCTNAGC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 194
BpuEI CTTGAG 4 cut(s) 102, 393, 437, 781
Bsa29I ATCGAT 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 285, 729
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 824, 858
BseAI TCCGGA 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 285, 729
BseLI CCNNNNNNNGG 3 cut(s) 244, 824, 858
BseMII CTCAG 3 cut(s) 207, 254, 692
BseXI GCAGC 5 cut(s) 116, 154, 157, 298, 721
BsgI GTGCAG 1 cut(s) 928
BshFI GGCC 3 cut(s) 5, 203, 446
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 350, 409
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 909
BslI CCNNNNNNNGG 3 cut(s) 244, 824, 858
BsmAI GTCTC 4 cut(s) 212, 527, 560, 672
BsmFI GGGAC 1 cut(s) 909
BsnI GGCC 3 cut(s) 5, 203, 446
Bsp1286I GDGCHC 2 cut(s) 350, 409
Bsp13I TCCGGA 1 cut(s) 670
Bsp143I GATC 3 cut(s) 133, 366, 428
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 2 cut(s) 102, 917
BspANI GGCC 3 cut(s) 5, 203, 446
BspCNI CTCAG 3 cut(s) 208, 253, 693
BspDI ATCGAT 1 cut(s) 651
BspEI TCCGGA 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 915
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 285, 729
BssMI GATC 3 cut(s) 133, 366, 428
BssSI CACGAG 1 cut(s) 563
BssT1I CCWWGG 2 cut(s) 285, 729
Bst2BI CACGAG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 158, 683
Bst6I CTCTTC 3 cut(s) 492, 711, 861
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 4 cut(s) 16, 85, 739, 921
BstDEI CTNAG 6 cut(s) 194, 205, 216, 240, 701, 742
BstDSI CCRYGG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 938
BstKTI GATC 3 cut(s) 136, 369, 431
BstMAI GTCTC 4 cut(s) 212, 527, 560, 672
BstMBI GATC 3 cut(s) 133, 366, 428
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 311
BstSFI CTRYAG 1 cut(s) 329
BstSNI TACGTA 1 cut(s) 696
BstV1I GCAGC 5 cut(s) 116, 154, 157, 298, 721
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 780
BstYI RGATCY 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 651
BsuRI GGCC 3 cut(s) 5, 203, 446
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 4 cut(s) 16, 85, 739, 921
CaiI CAGNNNCTG 2 cut(s) 215, 687
CfoI GCGC 1 cut(s) 938
Cfr13I GGNCC 1 cut(s) 815
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 3 cut(s) 256, 334, 631
CviAII CATG 3 cut(s) 286, 442, 941
CviQI GTAC 3 cut(s) 256, 334, 631
DdeI CTNAG 6 cut(s) 194, 205, 216, 240, 701, 742
DpnI GATC 3 cut(s) 135, 368, 430
DpnII GATC 3 cut(s) 133, 366, 428
DraI TTTAAA 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 3, 444
Eam1104I CTCTTC 3 cut(s) 492, 711, 861
EarI CTCTTC 3 cut(s) 492, 711, 861
Ecl136II GAGCTC 1 cut(s) 407
Eco105I TACGTA 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 285, 729
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 244, 516
EcoICRI GAGCTC 1 cut(s) 407
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 2 cut(s) 285, 729
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 285, 729
FaeI CATG 3 cut(s) 289, 445, 944
FaiI YATR 8 cut(s) 114, 287, 443, 489, 539, 764, 875, 942
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 909
FatI CATG 3 cut(s) 285, 441, 940
Fnu4HI GCNGC 6 cut(s) 102, 105, 168, 171, 312, 735
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 6 cut(s) 102, 105, 168, 171, 312, 735
FspBI CTAG 4 cut(s) 185, 360, 585, 879
GlaI GCGC 1 cut(s) 937
GluI GCNGC 6 cut(s) 102, 105, 168, 171, 312, 735
HaeIII GGCC 3 cut(s) 5, 203, 446
HapII CCGG 1 cut(s) 671
HhaI GCGC 1 cut(s) 938
Hin1II CATG 3 cut(s) 289, 445, 944
Hin6I GCGC 1 cut(s) 936
HinP1I GCGC 1 cut(s) 936
HincII GTYRAC 2 cut(s) 439, 646
HindII GTYRAC 2 cut(s) 439, 646
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 6 cut(s) 181, 588, 719, 828, 845, 946
HpaII CCGG 1 cut(s) 671
Hpy166II GTNNAC 2 cut(s) 439, 646
Hpy188I TCNGA 5 cut(s) 472, 481, 702, 815, 861
Hpy188III TCNNGA 8 cut(s) 262, 360, 370, 410, 455, 602, 671, 926
Hpy8I GTNNAC 2 cut(s) 439, 646
HpyAV CCTTC 4 cut(s) 147, 244, 385, 608
HpyCH4III ACNGT 2 cut(s) 158, 683
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 5 cut(s) 173, 314, 331, 388, 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 311
HpyF3I CTNAG 6 cut(s) 194, 205, 216, 240, 701, 742
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 3 cut(s) 289, 445, 944
HspAI GCGC 1 cut(s) 936
Kpn2I TCCGGA 1 cut(s) 670
Kzo9I GATC 3 cut(s) 133, 366, 428
LpnPI CCDG 7 cut(s) 69, 247, 651, 684, 761, 895, 911
Lsp1109I GCAGC 5 cut(s) 116, 154, 157, 298, 721
LweI GCATC 3 cut(s) 202, 292, 460
MaeI CTAG 4 cut(s) 185, 360, 585, 879
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 158, 683, 745
MalI GATC 3 cut(s) 135, 368, 430
MboI GATC 3 cut(s) 133, 366, 428
MboII GAAGA 5 cut(s) 67, 311, 509, 728, 848
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 350, 409
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 3 cut(s) 190, 597, 728
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 5 cut(s) 249, 366, 696, 862, 963
Mox20I TGGCCA 1 cut(s) 446
MroI TCCGGA 1 cut(s) 670
MscI TGGCCA 1 cut(s) 446
MseI TTAA 5 cut(s) 96, 189, 228, 425, 465
MslI CAYNNNNRTG 1 cut(s) 778
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 548, 641
MspI CCGG 1 cut(s) 671
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 311
NcoI CCATGG 1 cut(s) 285
NdeII GATC 3 cut(s) 133, 366, 428
NlaIII CATG 3 cut(s) 289, 445, 944
NlaIV GGNNCC 1 cut(s) 915
NmeAIII GCCGAG 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 778
PceI AGGCCT 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 980
PfeI GAWTC 3 cut(s) 828, 845, 946
PflMI CCANNNNNTGG 1 cut(s) 824
PkrI GCNGC 6 cut(s) 103, 106, 169, 172, 313, 736
PleI GAGTC 3 cut(s) 189, 596, 727
PpsI GAGTC 3 cut(s) 189, 596, 727
Ppu21I YACGTR 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 1 cut(s) 815
PstI CTGCAG 1 cut(s) 333
PstNI CAGNNNCTG 2 cut(s) 215, 687
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 2 cut(s) 548, 641
RsaI GTAC 3 cut(s) 257, 335, 632
RsaNI GTAC 3 cut(s) 256, 334, 631
RseI CAYNNNNRTG 1 cut(s) 778
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 5 cut(s) 96, 189, 228, 425, 465
SatI GCNGC 6 cut(s) 102, 105, 168, 171, 312, 735
Sau3AI GATC 3 cut(s) 133, 366, 428
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 3 cut(s) 190, 597, 728
SduI GDGCHC 2 cut(s) 350, 409
SfaNI GCATC 3 cut(s) 202, 292, 460
SfcI CTRYAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 815
SmiMI CAYNNNNRTG 1 cut(s) 778
SmlI CTYRAG 4 cut(s) 117, 408, 416, 796
SmoI CTYRAG 4 cut(s) 117, 408, 416, 796
SnaBI TACGTA 1 cut(s) 696
Sse9I AATT 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 2 cut(s) 102, 917
SspMI CTAG 4 cut(s) 185, 360, 585, 879
SstI GAGCTC 1 cut(s) 409
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 2 cut(s) 285, 729
TaaI ACNGT 2 cut(s) 158, 683
TaiI ACGT 1 cut(s) 698
TaqI TCGA 5 cut(s) 132, 579, 651, 884, 974
TaqII GACCGA 1 cut(s) 368
TasI AATT 1 cut(s) 421
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 3 cut(s) 828, 845, 946
Tru1I TTAA 5 cut(s) 96, 189, 228, 425, 465
Tru9I TTAA 5 cut(s) 96, 189, 228, 425, 465
TscAI CASTG 1 cut(s) 248
TseI GCWGC 5 cut(s) 104, 167, 170, 311, 734
TspDTI ATGAA 1 cut(s) 862
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 815
XapI RAATTY 1 cut(s) 421
XbaI TCTAGA 1 cut(s) 359
XspI CTAG 4 cut(s) 185, 360, 585, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.