FvH4_4g00880

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012537
Physical Location & Seq
Forward (+)
762808 .. 768370
5563 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00880.t2

Sequence Viewer

Length: 984 bp
ATGGCAGAAGCAGAGGGAGGATCAGATAAGAAGGCGAGTGGAGTCGAGTCTCTGAAAGACAAAGGAAATGAGCAATTCAAAGCTGGGAATTACCTCAAAGCCGCCGCTCTCTACACTCAGGCCATCAAGCAAGACCCACAAAACCCCACGCTCTATAGCAACCGTGCTGCTGCGTTTCTGCAGTTGGTCAAGCTTAGCAAAGCCCTTGCTGATGCTGAAACAACAATTACATTGAACCCCAAGTGGGAAAAGGGATATTTCAGGAAAGGATGCATATTAGAGGCCATGGAGCAATATGATGATGCTCTGACTGCTTTCCAGACAGCTTTGCAATATAACCCAAAAAGTGTAGAAGTATCACGAAAGATGAAGAAAATTTCTCAGTTGGCGAGAGATAAAAAGCGTGCTGAAGAGGTGGAGAAAATGAGATCTAATGTTGATTTGGCAAAACATTTGGATGAACTGAAATCCGAAATGTCTGGAAAGTGTGGGTCTGAAGAATGCGACGATGCATTCTCTTTTCTGGTTGAGACAATGGAGGCTGCTGTAAAATCATGGCACGAAACTTCAAAAGTGGAGGCTAGAGTGTACTTTCTCCTTGATAAAGAAAAAACAGACACTGAAAAGTATGCTCCAGCTGTGAATATTGATAAGGCCTTTGAATCACCCGATACACACAGAAATTGTTTTCCTTTTCTTAGGCAGTATGCTGAGGATTCTTTCTCTAGAGCAGCTTGCTTGGTGACTCCCAAGAGTATCATGTCTTACCCACAGGTTTGGAAAGGTCAAGGATCAAGGAAGTGGAAACATGGGCAACAGGATGGTTTCTTTGTTCAGTTTGAGGCACCTTTCTTGCGAAAGTTGTGGTTTATCCCTAGTTCCACTGAACTGGGCCAGACATTATGCAGGGATCCGGAAGATTTAGACATCAGTGCCCATGAATTGATTCCGCGCCTATTCAAAGAGAAGTCCTCCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

328

Amino Acids

37.08

Weight (kDa)

7.56

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 844
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 913
AciI CCGC 3 cut(s) 102, 105, 950
AclWI GGATC 4 cut(s) 28, 799, 905, 918
AcsI RAATTY 1 cut(s) 375
AcuI CTGAAG 2 cut(s) 429, 516
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 5 cut(s) 79, 235, 570, 662, 961
AluBI AGCT 5 cut(s) 83, 193, 326, 638, 734
AluI AGCT 5 cut(s) 83, 193, 326, 638, 734
Alw26I GTCTC 2 cut(s) 54, 524
AlwI GGATC 4 cut(s) 28, 799, 905, 918
AlwNI CAGNNNCTG 1 cut(s) 620
Aor13HI TCCGGA 1 cut(s) 913
AoxI GGCC 4 cut(s) 120, 282, 654, 892
ApeKI GCWGC 4 cut(s) 167, 170, 542, 731
ApoI RAATTY 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 945
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 2 cut(s) 657, 754
BaeGI GKGCMC 1 cut(s) 937
BamHI GGATCC 1 cut(s) 910
BanI GGYRCC 1 cut(s) 844
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 4 cut(s) 154, 157, 529, 743
BccI CCATC 2 cut(s) 131, 815
BcoDI GTCTC 2 cut(s) 54, 524
BfaI CTAG 3 cut(s) 582, 726, 876
BfmI CTRYAG 2 cut(s) 154, 179
BglII AGATCT 1 cut(s) 428
BisI GCNGC 6 cut(s) 102, 105, 168, 171, 543, 732
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 6 cut(s) 103, 106, 169, 172, 544, 733
BmgT120I GGNCC 1 cut(s) 892
BmiI GGNNCC 2 cut(s) 846, 912
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 4 cut(s) 202, 260, 292, 499
BmuI ACTGGG 1 cut(s) 899
BplI GAGNNNNNCTC 1 cut(s) 956
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 913
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 894
BseAI TCCGGA 1 cut(s) 913
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 3 cut(s) 275, 463, 826
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 3 cut(s) 131, 395, 702
BseNI ACTGG 1 cut(s) 894
BseSI GKGCMC 1 cut(s) 937
BseXI GCAGC 4 cut(s) 154, 157, 529, 743
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 952
BshFI GGCC 4 cut(s) 122, 284, 656, 894
BshNI GGYRCC 1 cut(s) 844
BsiSI CCGG 1 cut(s) 914
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 54, 524
BsmI GAATGC 2 cut(s) 506, 512
BsnI GGCC 4 cut(s) 122, 284, 656, 894
Bsp1286I GDGCHC 1 cut(s) 937
Bsp13I TCCGGA 1 cut(s) 913
Bsp143I GATC 4 cut(s) 20, 428, 791, 910
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 3 cut(s) 102, 105, 950
BspANI GGCC 4 cut(s) 122, 284, 656, 894
BspCNI CTCAG 3 cut(s) 130, 394, 703
BspEI TCCGGA 1 cut(s) 913
BspFNI CGCG 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 846, 912
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 4 cut(s) 28, 799, 905, 918
BspT107I GGYRCC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 894
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 4 cut(s) 20, 428, 791, 910
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 405, 736
BstDEI CTNAG 5 cut(s) 117, 194, 381, 698, 711
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 275, 463, 826
BstFNI CGCG 1 cut(s) 952
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 4 cut(s) 23, 431, 794, 913
BstMAI GTCTC 2 cut(s) 54, 524
BstMBI GATC 4 cut(s) 20, 428, 791, 910
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 154, 179
BstSLI GKGCMC 1 cut(s) 937
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 4 cut(s) 154, 157, 529, 743
BstX2I RGATCY 2 cut(s) 428, 910
BstXI CCANNNNNNTGG 2 cut(s) 777, 889
BstYI RGATCY 2 cut(s) 428, 910
BsuRI GGCC 4 cut(s) 122, 284, 656, 894
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 275, 463, 826
BtsIMutI CAGTG 3 cut(s) 618, 882, 937
Cac8I GCNNGC 2 cut(s) 405, 736
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 1 cut(s) 892
Csp6I GTAC 1 cut(s) 589
CviAII CATG 5 cut(s) 286, 555, 760, 809, 938
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 5 cut(s) 117, 194, 381, 698, 711
DpnI GATC 4 cut(s) 22, 430, 793, 912
DpnII GATC 4 cut(s) 20, 428, 791, 910
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 656
Eco57I CTGAAG 2 cut(s) 429, 516
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 2 cut(s) 275, 514
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 5 cut(s) 289, 558, 763, 812, 941
FatI CATG 5 cut(s) 285, 554, 759, 808, 937
Fnu4HI GCNGC 6 cut(s) 102, 105, 168, 171, 543, 732
FokI GGATG 3 cut(s) 282, 470, 833
Fsp4HI GCNGC 6 cut(s) 102, 105, 168, 171, 543, 732
FspBI CTAG 3 cut(s) 582, 726, 876
GlaI GCGC 1 cut(s) 953
GluI GCNGC 6 cut(s) 102, 105, 168, 171, 543, 732
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 4 cut(s) 122, 284, 656, 894
HapII CCGG 1 cut(s) 914
HhaI GCGC 1 cut(s) 954
Hin1II CATG 5 cut(s) 289, 558, 763, 812, 941
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 6 cut(s) 42, 47, 662, 716, 745, 946
HpaII CCGG 1 cut(s) 914
HphI GGTGA 2 cut(s) 657, 754
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 5 cut(s) 25, 54, 309, 472, 496
Hpy188III TCNNGA 6 cut(s) 262, 319, 360, 480, 726, 914
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 5 cut(s) 181, 273, 331, 512, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 117, 194, 381, 698, 711
Hsp92II CATG 5 cut(s) 289, 558, 763, 812, 941
HspAI GCGC 1 cut(s) 952
Kpn2I TCCGGA 1 cut(s) 913
Kzo9I GATC 4 cut(s) 20, 428, 791, 910
LmnI GCTCC 2 cut(s) 289, 637
Lsp1109I GCAGC 4 cut(s) 154, 157, 529, 743
LweI GCATC 4 cut(s) 202, 260, 292, 499
MaeI CTAG 3 cut(s) 582, 726, 876
MaeIII GTNAC 1 cut(s) 742
MalI GATC 4 cut(s) 22, 430, 793, 912
MbiI CCGCTC 1 cut(s) 107
MboI GATC 4 cut(s) 20, 428, 791, 910
MboII GAAGA 4 cut(s) 382, 422, 509, 929
MflI RGATCY 2 cut(s) 428, 910
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 6 cut(s) 74, 88, 225, 375, 682, 941
MlyI GAGTC 3 cut(s) 51, 56, 739
Mph1103I ATGCAT 2 cut(s) 275, 514
MroI TCCGGA 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 945
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 914
Mva1269I GAATGC 2 cut(s) 506, 512
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 1 cut(s) 311
NcoI CCATGG 1 cut(s) 285
NdeII GATC 4 cut(s) 20, 428, 791, 910
NlaIII CATG 5 cut(s) 289, 558, 763, 812, 941
NlaIV GGNNCC 2 cut(s) 846, 912
NmuCI GTSAC 1 cut(s) 742
NsiI ATGCAT 2 cut(s) 275, 514
PceI AGGCCT 1 cut(s) 656
PctI GAATGC 2 cut(s) 506, 512
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 3 cut(s) 662, 716, 946
PkrI GCNGC 6 cut(s) 103, 106, 169, 172, 544, 733
PleI GAGTC 3 cut(s) 50, 55, 739
PpsI GAGTC 3 cut(s) 50, 55, 739
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 846, 912
PspPI GGNCC 1 cut(s) 892
PstI CTGCAG 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 2 cut(s) 428, 910
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 456
SatI GCNGC 6 cut(s) 102, 105, 168, 171, 543, 732
Sau3AI GATC 4 cut(s) 20, 428, 791, 910
Sau96I GGNCC 1 cut(s) 892
SchI GAGTC 3 cut(s) 51, 56, 739
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 4 cut(s) 202, 260, 292, 499
SfcI CTRYAG 2 cut(s) 154, 179
SmiMI CAYNNNNRTG 1 cut(s) 456
Sse9I AATT 6 cut(s) 74, 88, 225, 375, 682, 941
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 3 cut(s) 102, 105, 950
SspI AATATT 1 cut(s) 646
SspMI CTAG 3 cut(s) 582, 726, 876
StuI AGGCCT 1 cut(s) 656
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 45
TasI AATT 6 cut(s) 74, 88, 225, 375, 682, 941
TatI WGTACW 1 cut(s) 588
TauI GCSGC 2 cut(s) 104, 107
TfiI GAWTC 3 cut(s) 662, 716, 946
TscAI CASTG 3 cut(s) 625, 889, 937
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 4 cut(s) 167, 170, 542, 731
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 3 cut(s) 383, 474, 954
TspRI CASTG 3 cut(s) 625, 889, 937
XapI RAATTY 1 cut(s) 375
XbaI TCTAGA 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 3 cut(s) 582, 726, 876
Zsp2I ATGCAT 2 cut(s) 275, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.