Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011414.1

Orthogroup ID

OG0012537

Physical Location & Seq

Genomic Coordinates Forward (+)

18809 .. 23379

Gene Structure 4571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011414.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggcagaagcagaaggaggatcagataagaagtctggtgagtctctgaaagacaaaggaaatgagcaattcaaagctgggaattacctcaaagccgccgctctctacactcaggccattaagcaagaccctcaaaaccccactctctatagcaaccgtgctgctgcgtttctgcaattggttaagcttaacaaagcccttgctgatgcagaaacaacaattacattgaaccccaagtgggaaaagggatatttcaggaaaggatgcatattagaggccatggagcaatatgatgatgctctgactgctttccagacagctttgcaatataacccaaaaagtgtagaagtatcacgaaagatgaagagaatttttcagttggcgagagataaaaaacgtgctgaagaggtggagacaatgagatcaaatgttgatatggcaaaacatttggataaactgaaatctgaaatgtctggaaagtgtgggtctgaagaacatgaagatgtgttttcttttctggttgagacaatggaggcagctgtaaaatcatggcacgaaacttcgaaagtggaggctagagtttactttctccttgataacgaaaaaacagacactgaaaaatatgctccagttgtgaatattgataaggcctttgaatcacccgatacgcacagaaattgttttccttttcttaggcagtatgctgaggattctttctccagagcagcttgcttggtgacccccaagagtatcatgtcttacccacaggtttggaaaggtcaaggatcaaggaaatggaaacatgggcaacaggatggtttctttgttcagtttgagacacctttcttgcgaaagttgtggtttattcctagttccaatgaactgggccagacattgtgcagggatccagaagatttagacatcagtgcccatgaattaattccgcgcctattcaaagtgaagtcctccaattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

325

Amino Acids

37.1

Weight (kDa)

7.6

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04190
fragaria_vesca	FvH4_4g00880 FvH4_4g00880
malus_domestica	MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica	Prupe.1G019800_v2.0.a1
pyrus_communis	pycom13g17180 pycom16g16710
rosa_chinensis	RchiOBHm_Chr4g0387501
rosa_laevigata	RLG00000010117
rosa_multiflora	Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334180
rosa_rugosa	Rorug03G0310200
rosa_samantha	Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana	Rw4G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	946
AciI	CCGC	3 cut(s)	96, 99, 944
AclWI	GGATC	4 cut(s)	28, 793, 899, 912
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	2 cut(s)	423, 510
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	73, 229, 656, 955
AluBI	AGCT	5 cut(s)	77, 187, 320, 539, 728
AluI	AGCT	5 cut(s)	77, 187, 320, 539, 728
Alw26I	GTCTC	4 cut(s)	48, 407, 518, 830
AlwI	GGATC	4 cut(s)	28, 793, 899, 912
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	4 cut(s)	114, 276, 648, 886
ApeKI	GCWGC	4 cut(s)	161, 164, 536, 725
ApoI	RAATTY	1 cut(s)	369
AseI	ATTAAT	1 cut(s)	938
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	886
AsuHPI	GGTGA	3 cut(s)	50, 651, 748
AsuII	TTCGAA	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	931
BamHI	GGATCC	1 cut(s)	904
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	148, 151, 548, 737
BccI	CCATC	1 cut(s)	809
BcoDI	GTCTC	4 cut(s)	48, 407, 518, 830
BfaI	CTAG	2 cut(s)	576, 870
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	6 cut(s)	96, 99, 162, 165, 537, 726
BlsI	GCNGC	6 cut(s)	97, 100, 163, 166, 538, 727
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	1 cut(s)	906
BmrI	ACTGGG	1 cut(s)	893
BmsI	GCATC	3 cut(s)	196, 254, 286
BmuI	ACTGGG	1 cut(s)	893
BpmI	CTGGAG	2 cut(s)	612, 703
Bpu10I	CCTNAGC	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	629, 888
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	269, 820
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	125, 696
BseNI	ACTGG	2 cut(s)	629, 888
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	4 cut(s)	148, 151, 548, 737
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	919
Bsh1236I	CGCG	1 cut(s)	946
BshFI	GGCC	4 cut(s)	116, 278, 650, 888
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	4 cut(s)	48, 407, 518, 830
BsnI	GGCC	4 cut(s)	116, 278, 650, 888
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	931
Bsp143I	GATC	4 cut(s)	20, 422, 785, 904
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	3 cut(s)	96, 99, 944
BspANI	GGCC	4 cut(s)	116, 278, 650, 888
BspCNI	CTCAG	2 cut(s)	124, 697
BspFNI	CGCG	1 cut(s)	946
BspLI	GGNNCC	1 cut(s)	906
BspPI	GGATC	4 cut(s)	28, 793, 899, 912
BspT104I	TTCGAA	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	629, 888
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	4 cut(s)	20, 422, 785, 904
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	359, 399
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	3 cut(s)	111, 692, 705
BstDSI	CCRYGG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	269, 820
BstFNI	CGCG	1 cut(s)	946
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	4 cut(s)	23, 425, 788, 907
BstMAI	GTCTC	4 cut(s)	48, 407, 518, 830
BstMBI	GATC	4 cut(s)	20, 422, 785, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	736
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	931
BstUI	CGCG	1 cut(s)	946
BstV1I	GCAGC	4 cut(s)	148, 151, 548, 737
BstX2I	RGATCY	1 cut(s)	904
BstXI	CCANNNNNNTGG	2 cut(s)	771, 883
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	4 cut(s)	116, 278, 650, 888
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	269, 820
BtsIMutI	CAGTG	2 cut(s)	612, 931
Cac8I	GCNNGC	1 cut(s)	730
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	1 cut(s)	948
Cfr13I	GGNCC	1 cut(s)	886
CviAII	CATG	6 cut(s)	280, 497, 549, 754, 803, 932
DdeI	CTNAG	3 cut(s)	111, 692, 705
DpnI	GATC	4 cut(s)	22, 424, 787, 906
DpnII	GATC	4 cut(s)	20, 422, 785, 904
Eam1104I	CTCTTC	2 cut(s)	359, 399
EarI	CTCTTC	2 cut(s)	359, 399
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	423, 510
Eco91I	GGTNACC	1 cut(s)	736
EcoO65I	GGTNACC	1 cut(s)	736
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	6 cut(s)	283, 500, 552, 757, 806, 935
FatI	CATG	6 cut(s)	279, 496, 548, 753, 802, 931
Fnu4HI	GCNGC	6 cut(s)	96, 99, 162, 165, 537, 726
FokI	GGATG	2 cut(s)	276, 827
Fsp4HI	GCNGC	6 cut(s)	96, 99, 162, 165, 537, 726
FspBI	CTAG	2 cut(s)	576, 870
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	6 cut(s)	96, 99, 162, 165, 537, 726
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	2 cut(s)	612, 703
HaeIII	GGCC	4 cut(s)	116, 278, 650, 888
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	6 cut(s)	283, 500, 552, 757, 806, 935
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	41, 656, 710
HphI	GGTGA	3 cut(s)	50, 651, 748
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	5 cut(s)	25, 48, 303, 466, 490
Hpy188III	TCNNGA	6 cut(s)	256, 313, 354, 474, 720, 908
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	175, 209, 267, 325, 900
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	111, 692, 705
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	6 cut(s)	283, 500, 552, 757, 806, 935
HspAI	GCGC	1 cut(s)	946
Kzo9I	GATC	4 cut(s)	20, 422, 785, 904
LmnI	GCTCC	2 cut(s)	283, 631
Lsp1109I	GCAGC	4 cut(s)	148, 151, 548, 737
LweI	GCATC	3 cut(s)	196, 254, 286
MaeI	CTAG	2 cut(s)	576, 870
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	4 cut(s)	22, 424, 787, 906
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	4 cut(s)	20, 422, 785, 904
MboII	GAAGA	5 cut(s)	376, 416, 503, 512, 923
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	1 cut(s)	931
MluCI	AATT	9 cut(s)	68, 82, 176, 219, 369, 676, 935, 939, 970
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	9 cut(s)	11, 98, 141, 268, 400, 526, 565, 700, 976
Mph1103I	ATGCAT	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	4 cut(s)	120, 183, 189, 938
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	946
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	4 cut(s)	20, 422, 785, 904
NlaIII	CATG	6 cut(s)	283, 500, 552, 757, 806, 935
NlaIV	GGNNCC	1 cut(s)	906
NmuCI	GTSAC	1 cut(s)	736
NsiI	ATGCAT	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	656, 710
PkrI	GCNGC	6 cut(s)	97, 100, 163, 166, 538, 727
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	938
PspEI	GGTNACC	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	906
PspPI	GGNCC	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	120, 183, 189, 938
SatI	GCNGC	6 cut(s)	96, 99, 162, 165, 537, 726
Sau3AI	GATC	4 cut(s)	20, 422, 785, 904
Sau96I	GGNCC	1 cut(s)	886
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	931
SfaNI	GCATC	3 cut(s)	196, 254, 286
SfcI	CTRYAG	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	9 cut(s)	68, 82, 176, 219, 369, 676, 935, 939, 970
SseBI	AGGCCT	1 cut(s)	650
SsiI	CCGC	3 cut(s)	96, 99, 944
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	2 cut(s)	576, 870
StuI	AGGCCT	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	563
TasI	AATT	9 cut(s)	68, 82, 176, 219, 369, 676, 935, 939, 970
TauI	GCSGC	2 cut(s)	98, 101
TfiI	GAWTC	2 cut(s)	656, 710
Tru1I	TTAA	4 cut(s)	120, 183, 189, 938
Tru9I	TTAA	4 cut(s)	120, 183, 189, 938
TscAI	CASTG	2 cut(s)	619, 931
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	4 cut(s)	161, 164, 536, 725
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	5 cut(s)	377, 513, 894, 948, 963
TspRI	CASTG	2 cut(s)	619, 931
VspI	ATTAAT	1 cut(s)	938
XapI	RAATTY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	576, 870
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.