Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012537

Physical Location & Seq

Genomic Coordinates Forward (+)

17463524 .. 17468833

Gene Structure 5310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1198100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGAAGCAGAGGGGGGAGGATCAGGTAGGGTGGGCGCATCGGCAGGAGGTGGAGGAGCTGAGTCTCTGAAAGCTAAAGGAAATGAGCAGTTCAAAGCGGGGAACTACCTCAAAGCCGCTGCACTCTACACTCAGGCCATCAAGCAAGACCCCAATAACCCCACTCTCTATAGCAACCGTGCTGCAGCATTTCTTCAATTGGTTAAGCTTAGCAAAGCCCTTGCTGATGCGGAGACAACAATTAAATTGAACCCCCAGTGGGAGAAGGGATATTTCAGGAAAGGTTGCATATTAGAGGCCATGGAACAATATGATGATGCTTTGGTTGCTTTCCAAACAGCTTTGGAATATAACTCGCAAAGCACAGAAGTATCAAGAAAGATAAAAAGGATTTCTCAGTTGGCGAGAGATAAAAAACGTGCAGAAGTGGTGGAGAAAATGAGATCCAATGTTGATATGGCGAGGCATTTGGATAAACTGAAATCTGAAATGTCTGGGAAGCGTGGATCTGAAGAATGTTGGGAAGAAATGTTTTCTTTCCTTGTCGAGACAATGGAGTCAGCTGTAAAATCATGGCATGAAACTTCTAAAGTGGAGGCTAGAGTTTACTTTCTCCTAGATAAGGAAGAAACAGACACCGAGAAATATGCTCCAGCTGTGAATATTGATAAGGCTTTTGAATCGCCCCATACACATGGCAGTTGTTTTTCATTTCTTAGGCAGTATGCTGAGGATTCTTTCTCCAGAGCAGCTTGCTTGGTGACTCCCAAAAGTATCATGTCTTATCCACAGGTTTGGAAAGGTCAAGGTTCAAGGAAATGGAAACACGGGCAACATGATGGCTTCTTTGTGCAATTTGAGACCCCTTTCCTGCGGAAGCTGTGGTTTATTTCTAGTTCCATTGAACTGGGCCAGACATTGTGCAGGGATCCGGAGGATTTAGACATCAGTGCCCATGAATTGATTCCACGCCTATTCAAACAGTCCGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

333

Amino Acids

37.37

Weight (kDa)

7.06

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	24 - 91	2.5e-06	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_16	PF13432	26 - 83	9.1e-07	Tetratricopeptide repeat
TPR_11	PF13414	28 - 68	9e-09	TPR repeat
TPR_1	PF00515	90 - 120	4.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04190
fragaria_vesca	FvH4_4g00880 FvH4_4g00880
malus_domestica	MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica	Prupe.1G019800_v2.0.a1
pyrus_communis	pycom13g17180 pycom16g16710
rosa_chinensis	RchiOBHm_Chr4g0387501
rosa_laevigata	RLG00000010117
rosa_multiflora	Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334180
rosa_rugosa	Rorug03G0310200
rosa_samantha	Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana	Rw4G001040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	934
AciI	CCGC	5 cut(s)	5, 101, 120, 233, 877
AclWI	GGATC	5 cut(s)	31, 441, 517, 926, 939
AcuI	CTGAAG	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	262, 625
AgsI	TTSAA	7 cut(s)	97, 200, 253, 683, 816, 908, 982
AluBI	AGCT	8 cut(s)	62, 77, 211, 344, 566, 659, 755, 883
AluI	AGCT	8 cut(s)	62, 77, 211, 344, 566, 659, 755, 883
Alw26I	GTCTC	4 cut(s)	72, 230, 545, 857
AlwI	GGATC	5 cut(s)	31, 441, 517, 926, 939
Aor13HI	TCCGGA	1 cut(s)	934
AoxI	GGCC	3 cut(s)	138, 300, 913
ApeKI	GCWGC	4 cut(s)	122, 185, 188, 752
Asp700I	GAANNNNTTC	1 cut(s)	966
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	913
AsuHPI	GGTGA	1 cut(s)	775
BaeGI	GKGCMC	1 cut(s)	958
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BamHI	GGATCC	1 cut(s)	931
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	109, 172, 200, 764
BccI	CCATC	2 cut(s)	149, 836
BcgI	CGANNNNNNTGC	2 cut(s)	632, 666
BcoDI	GTCTC	4 cut(s)	72, 230, 545, 857
BfaI	CTAG	3 cut(s)	603, 620, 897
BfmI	CTRYAG	2 cut(s)	172, 186
BisI	GCNGC	5 cut(s)	120, 123, 186, 189, 753
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	5 cut(s)	121, 124, 187, 190, 754
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	1 cut(s)	933
BmrI	ACTGGG	2 cut(s)	253, 920
BmsI	GCATC	3 cut(s)	50, 220, 310
BmuI	ACTGGG	2 cut(s)	253, 920
BpmI	CTGGAG	2 cut(s)	639, 730
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 625
Bse1I	ACTGG	2 cut(s)	259, 915
BseAI	TCCGGA	1 cut(s)	934
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	262, 625
BseMII	CTCAG	4 cut(s)	54, 149, 413, 723
BseNI	ACTGG	2 cut(s)	259, 915
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	4 cut(s)	109, 172, 200, 764
BsgI	GTGCAG	3 cut(s)	108, 444, 946
BshFI	GGCC	3 cut(s)	140, 302, 915
BsiSI	CCGG	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	262, 625
BsmAI	GTCTC	4 cut(s)	72, 230, 545, 857
BsnI	GGCC	3 cut(s)	140, 302, 915
Bso31I	GGTCTC	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	4 cut(s)	23, 446, 509, 931
Bsp1720I	GCTNAGC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	5 cut(s)	5, 101, 120, 233, 877
BspANI	GGCC	3 cut(s)	140, 302, 915
BspCNI	CTCAG	4 cut(s)	55, 148, 412, 724
BspEI	TCCGGA	1 cut(s)	934
BspLI	GGNNCC	1 cut(s)	933
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	5 cut(s)	31, 441, 517, 926, 939
BspTNI	GGTCTC	1 cut(s)	857
BsrI	ACTGG	2 cut(s)	259, 915
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	23, 446, 509, 931
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	182, 987
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	6 cut(s)	63, 135, 212, 399, 719, 732
BstDSI	CCRYGG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	26, 449, 512, 934
BstMAI	GTCTC	4 cut(s)	72, 230, 545, 857
BstMBI	GATC	4 cut(s)	23, 446, 509, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	172, 186
BstSLI	GKGCMC	1 cut(s)	958
BstV1I	GCAGC	4 cut(s)	109, 172, 200, 764
BstX2I	RGATCY	3 cut(s)	446, 509, 931
BstXI	CCANNNNNNTGG	3 cut(s)	698, 798, 910
BstYI	RGATCY	3 cut(s)	446, 509, 931
BsuRI	GGCC	3 cut(s)	140, 302, 915
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	266, 958
Cac8I	GCNNGC	1 cut(s)	757
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	913
CviAII	CATG	7 cut(s)	304, 576, 581, 698, 781, 839, 959
DdeI	CTNAG	6 cut(s)	63, 135, 212, 399, 719, 732
DpnI	GATC	4 cut(s)	25, 448, 511, 933
DpnII	GATC	4 cut(s)	23, 446, 509, 931
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	857
Eco57I	CTGAAG	1 cut(s)	534
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	7 cut(s)	307, 579, 584, 701, 784, 842, 962
FatI	CATG	7 cut(s)	303, 575, 580, 697, 780, 838, 958
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	120, 123, 186, 189, 753
Fsp4HI	GCNGC	5 cut(s)	120, 123, 186, 189, 753
FspBI	CTAG	3 cut(s)	603, 620, 897
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	120, 123, 186, 189, 753
GsuI	CTGGAG	2 cut(s)	639, 730
HaeIII	GGCC	3 cut(s)	140, 302, 915
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	307, 579, 584, 701, 784, 842, 962
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	7 cut(s)	65, 560, 683, 737, 766, 967, 992
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	4 cut(s)	72, 490, 514, 991
Hpy188III	TCNNGA	5 cut(s)	280, 378, 550, 747, 935
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	182, 987
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	6 cut(s)	125, 188, 291, 425, 856, 927
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	6 cut(s)	63, 135, 212, 399, 719, 732
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	7 cut(s)	307, 579, 584, 701, 784, 842, 962
HspAI	GCGC	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	23, 446, 509, 931
LmnI	GCTCC	2 cut(s)	59, 658
Lsp1109I	GCAGC	4 cut(s)	109, 172, 200, 764
LweI	GCATC	3 cut(s)	50, 220, 310
MaeI	CTAG	3 cut(s)	603, 620, 897
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	4 cut(s)	25, 448, 511, 933
MboI	GATC	4 cut(s)	23, 446, 509, 931
MboII	GAAGA	4 cut(s)	188, 527, 539, 641
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	3 cut(s)	446, 509, 931
MhlI	GDGCHC	1 cut(s)	958
MluCI	AATT	5 cut(s)	200, 243, 248, 857, 962
MlyI	GAGTC	3 cut(s)	74, 569, 760
MroI	TCCGGA	1 cut(s)	934
MroXI	GAANNNNTTC	1 cut(s)	966
MseI	TTAA	3 cut(s)	207, 246, 997
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	3 cut(s)	122, 566, 659
MspI	CCGG	1 cut(s)	935
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	23, 446, 509, 931
NlaIII	CATG	7 cut(s)	307, 579, 584, 701, 784, 842, 962
NlaIV	GGNNCC	1 cut(s)	933
NmuCI	GTSAC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	966
PfeI	GAWTC	4 cut(s)	683, 737, 967, 992
PkrI	GCNGC	5 cut(s)	121, 124, 187, 190, 754
PleI	GAGTC	3 cut(s)	73, 568, 760
PpsI	GAGTC	3 cut(s)	73, 568, 760
PspN4I	GGNNCC	1 cut(s)	933
PspPI	GGNCC	1 cut(s)	913
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	3 cut(s)	446, 509, 931
PvuII	CAGCTG	2 cut(s)	566, 659
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	3 cut(s)	207, 246, 997
SatI	GCNGC	5 cut(s)	120, 123, 186, 189, 753
Sau3AI	GATC	4 cut(s)	23, 446, 509, 931
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	3 cut(s)	74, 569, 760
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	3 cut(s)	50, 220, 310
SfcI	CTRYAG	2 cut(s)	172, 186
SmiMI	CAYNNNNRTG	1 cut(s)	696
Sse9I	AATT	5 cut(s)	200, 243, 248, 857, 962
SsiI	CCGC	5 cut(s)	5, 101, 120, 233, 877
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	603, 620, 897
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	182, 987
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	549
TasI	AATT	5 cut(s)	200, 243, 248, 857, 962
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	4 cut(s)	683, 737, 967, 992
Tru1I	TTAA	3 cut(s)	207, 246, 997
Tru9I	TTAA	3 cut(s)	207, 246, 997
TscAI	CASTG	2 cut(s)	266, 958
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	122, 185, 188, 752
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	3 cut(s)	597, 702, 975
TspRI	CASTG	2 cut(s)	266, 958
XagI	CCTNNNNNAGG	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	3 cut(s)	603, 620, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.