Rh4CG017500

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012537
Physical Location & Seq
Forward (+)
3557821 .. 3563315
5495 bp
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UTR
Exon/CDS
Intron
Rh4CG017500.1

Sequence Viewer

Length: 903 bp
ATGGCAGAAGCAGAAGGAGGATCAGATAAGAAGTCTGGTGAGTCTCTGAAAGACAAAGGAAATGAGCAATTCAAAGCTGGAAATTACCTCAAAGCCGCCGCTCTCTACACTCAGGCCATTAAACAAGACCCTCAGAACCCCACTCTCTATAGCAACCGTGCTGCTGCGTTTCTGCAATTGGTTAAGCTTAACAAAGCCCTTGCTGATGCAGAAACAACAATTACATTGAACCCCAAGTGGGAAAAGGGATATTTCAGGAAAGGATGCATATTAGAGGCCATGGAGCAATATGATGATGCTCTGACTGCTTTCCAGACAGCTTTGCAATATAACCCAAAAAGTGTAGAAGTATCACGAAAGATGAAGAGAATTTTTCAGTTGGCGAGAGATAAAAAACGTGCTGAAGAGGTGGAGACAATGAGATCAAATGTTGATATGGCAAAACATTTGGATAAACTGAAATCTGAAATGTCTGGAAAGTGTGGGTCTGAAGAACTTGAAGATGTGTTTTCTTTTCTGGTTGAGACAATGGAGGCAGCTGTAAAATCATGGCACGAAACTTCGAAAGTGGAGGCTAGAGTTTACTTTCTCCTTGATAACGAAAAAACAGATACTGAAAAATATGCTCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCCGATACGCACAGAAATTGTTTTCCTTTTCTTAGGCAGTATGCTGAGGATTCTTTCTCCAGAGCAGCTTGCTTGGTGACCCCCAAGAGTATCATGTCTTACCCACAGGTTTGGAAAGGTCAAGGATCAAGGAAATGGAAACATGGGCAACAGGATGACGTGCCTGCCTGGGGTGATTTGAGAAACCTCATAGGAGTCTTGAACCTATGTTGCGGTTATCGTGGAACAGTTACTGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

300

Amino Acids

33.93

Weight (kDa)

8.07

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 16 - 83 8.6e-07 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_16 PF13432 18 - 71 1.8e-06 Tetratricopeptide repeat
TPR_11 PF13414 20 - 60 1.4e-08 TPR repeat
TPR_1 PF00515 82 - 113 5.5e-07 Tetratricopeptide repeat
TPR_2 PF07719 82 - 113 1.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 3 cut(s) 96, 99, 873
AclWI GGATC 2 cut(s) 28, 793
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 2 cut(s) 423, 510
AfiI CCNNNNNNNGG 2 cut(s) 238, 830
AgsI TTSAA 5 cut(s) 73, 229, 500, 656, 862
AjiI CACGTC 1 cut(s) 820
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 5 cut(s) 77, 187, 320, 539, 728
AluI AGCT 5 cut(s) 77, 187, 320, 539, 728
Alw26I GTCTC 3 cut(s) 48, 407, 518
AlwI GGATC 2 cut(s) 28, 793
AlwNI CAGNNNCTG 2 cut(s) 614, 893
AoxI GGCC 3 cut(s) 114, 276, 648
ApeKI GCWGC 4 cut(s) 161, 164, 536, 725
ApoI RAATTY 1 cut(s) 369
AsuHPI GGTGA 4 cut(s) 50, 651, 748, 845
AsuII TTCGAA 1 cut(s) 563
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 4 cut(s) 148, 151, 548, 737
BciT130I CCWGG 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 48, 407, 518
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
BlsI GCNGC 6 cut(s) 97, 100, 163, 166, 538, 727
Bme1390I CCNGG 1 cut(s) 829
BmgBI CACGTC 1 cut(s) 820
BmrFI CCNGG 1 cut(s) 829
BmsI GCATC 3 cut(s) 196, 254, 286
BpmI CTGGAG 2 cut(s) 612, 703
Bpu10I CCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 279, 828
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 830
Bse1I ACTGG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 2 cut(s) 279, 828
BseGI GGATG 2 cut(s) 269, 820
BseLI CCNNNNNNNGG 2 cut(s) 238, 830
BseMII CTCAG 3 cut(s) 125, 146, 696
BseNI ACTGG 1 cut(s) 629
BseXI GCAGC 4 cut(s) 148, 151, 548, 737
BshFI GGCC 3 cut(s) 116, 278, 650
BslI CCNNNNNNNGG 2 cut(s) 238, 830
BsmAI GTCTC 3 cut(s) 48, 407, 518
BsnI GGCC 3 cut(s) 116, 278, 650
Bsp119I TTCGAA 1 cut(s) 563
Bsp143I GATC 3 cut(s) 20, 422, 785
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 3 cut(s) 96, 99, 873
BspANI GGCC 3 cut(s) 116, 278, 650
BspCNI CTCAG 3 cut(s) 124, 145, 697
BspPI GGATC 2 cut(s) 28, 793
BspT104I TTCGAA 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 629
BssECI CCNNGG 2 cut(s) 279, 828
BssMI GATC 3 cut(s) 20, 422, 785
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 158, 889, 895
Bst6I CTCTTC 2 cut(s) 359, 399
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 730, 825
BstDEI CTNAG 4 cut(s) 111, 132, 692, 705
BstDSI CCRYGG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 2 cut(s) 269, 820
BstKTI GATC 3 cut(s) 23, 425, 788
BstMAI GTCTC 3 cut(s) 48, 407, 518
BstMBI GATC 3 cut(s) 20, 422, 785
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 829
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 827
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 4 cut(s) 148, 151, 548, 737
BstXI CCANNNNNNTGG 1 cut(s) 771
BsuRI GGCC 3 cut(s) 116, 278, 650
BtgI CCRYGG 1 cut(s) 279
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 2 cut(s) 269, 820
Cac8I GCNNGC 2 cut(s) 730, 825
CaiI CAGNNNCTG 2 cut(s) 614, 893
CviAII CATG 4 cut(s) 280, 549, 754, 803
DdeI CTNAG 4 cut(s) 111, 132, 692, 705
DpnI GATC 3 cut(s) 22, 424, 787
DpnII GATC 3 cut(s) 20, 422, 785
Eam1104I CTCTTC 2 cut(s) 359, 399
EarI CTCTTC 2 cut(s) 359, 399
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 650
Eco57I CTGAAG 2 cut(s) 423, 510
Eco91I GGTNACC 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 283, 552, 757, 806
FatI CATG 4 cut(s) 279, 548, 753, 802
Fnu4HI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
FokI GGATG 2 cut(s) 276, 827
Fsp4HI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
FspBI CTAG 1 cut(s) 576
GluI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
GsuI CTGGAG 2 cut(s) 612, 703
HaeIII GGCC 3 cut(s) 116, 278, 650
Hin1II CATG 4 cut(s) 283, 552, 757, 806
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 4 cut(s) 41, 656, 710, 855
HphI GGTGA 4 cut(s) 50, 651, 748, 845
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 6 cut(s) 25, 48, 135, 303, 466, 490
Hpy188III TCNNGA 6 cut(s) 256, 313, 354, 474, 720, 859
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 158, 889, 895
HpyCH4IV ACGT 2 cut(s) 397, 819
HpyCH4V TGCA 4 cut(s) 175, 209, 267, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 4 cut(s) 111, 132, 692, 705
HpySE526I ACGT 2 cut(s) 397, 819
Hsp92II CATG 4 cut(s) 283, 552, 757, 806
Kzo9I GATC 3 cut(s) 20, 422, 785
LmnI GCTCC 2 cut(s) 283, 631
Lsp1109I GCAGC 4 cut(s) 148, 151, 548, 737
LweI GCATC 3 cut(s) 196, 254, 286
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 397, 819
MaeIII GTNAC 3 cut(s) 736, 889, 895
MalI GATC 3 cut(s) 22, 424, 787
MbiI CCGCTC 1 cut(s) 101
MboI GATC 3 cut(s) 20, 422, 785
MboII GAAGA 4 cut(s) 376, 416, 503, 512
MfeI CAATTG 1 cut(s) 176
MluCI AATT 6 cut(s) 68, 82, 176, 219, 369, 676
MlyI GAGTC 2 cut(s) 50, 864
MnlI CCTC 9 cut(s) 11, 98, 141, 268, 400, 526, 565, 700, 857
Mph1103I ATGCAT 1 cut(s) 269
MseI TTAA 3 cut(s) 120, 183, 189
MspA1I CMGCKG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 829
MunI CAATTG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 829
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 20, 422, 785
NlaIII CATG 4 cut(s) 283, 552, 757, 806
NmuCI GTSAC 1 cut(s) 736
NsiI ATGCAT 1 cut(s) 269
NspV TTCGAA 1 cut(s) 563
PceI AGGCCT 1 cut(s) 650
PfeI GAWTC 2 cut(s) 656, 710
PkrI GCNGC 6 cut(s) 97, 100, 163, 166, 538, 727
PleI GAGTC 2 cut(s) 49, 863
PpsI GAGTC 2 cut(s) 49, 863
Psp6I CCWGG 1 cut(s) 827
PspEI GGTNACC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 827
PstNI CAGNNNCTG 2 cut(s) 614, 893
PvuII CAGCTG 1 cut(s) 539
SaqAI TTAA 3 cut(s) 120, 183, 189
SatI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
Sau3AI GATC 3 cut(s) 20, 422, 785
SchI GAGTC 2 cut(s) 50, 864
ScrFI CCNGG 1 cut(s) 829
SfaNI GCATC 3 cut(s) 196, 254, 286
SfcI CTRYAG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 563
Sse9I AATT 6 cut(s) 68, 82, 176, 219, 369, 676
SseBI AGGCCT 1 cut(s) 650
SsiI CCGC 3 cut(s) 96, 99, 873
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 576
StuI AGGCCT 1 cut(s) 650
StyD4I CCNGG 1 cut(s) 827
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 158, 889, 895
TaiI ACGT 2 cut(s) 400, 822
TaqI TCGA 1 cut(s) 563
TasI AATT 6 cut(s) 68, 82, 176, 219, 369, 676
TauI GCSGC 2 cut(s) 98, 101
TfiI GAWTC 2 cut(s) 656, 710
Tru1I TTAA 3 cut(s) 120, 183, 189
Tru9I TTAA 3 cut(s) 120, 183, 189
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 4 cut(s) 161, 164, 536, 725
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 1 cut(s) 377
XapI RAATTY 1 cut(s) 369
XspI CTAG 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.