Prupe.1G019800_v2.0.a1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012537
Physical Location & Seq
Forward (+)
1382291 .. 1386924
4634 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G019800.1

Sequence Viewer

Length: 990 bp
ATGGCGGAAGCAGGAGGATCAGATAAGGCGGGCGCATCGGCAGGAGGGGGAGTTGAGTCGCTGAAAGATAAAGGAAATGAGCATTTCAAAGCAGGGAACTATCTCAAAGCCGCTGCACTCTACACTCAGGCCATCAAGCAAGACCCTAACAACCCCACTCTTTATAGCAACCGCGCTGCGGCATTTTTGCAATTGGTTAAGCTTAGCAAAGCCCTTGCTGATGCAGAGACCACAATTAAATTGAACCCCCAGTGGGAAAAGGGATATTTCAGGAAAGGATGCATATTAGAGGCCATGGAACAATATGATGATGCTTTAGCTGCTTTCCAAACAGCTTTGCAATATAACTCACAAAGCACAGAAGTATCAAGAAAGATAAAAAGGATTTCTCAGTTGGCGAGAGATAAAAAACGTGCTCAGGAGGTGGAGAAAATGAGATCCAATGTTGATATGGCAAGACAATTGGATAAACTGAAATCTGAAATGTCTGGAAAGCGTGGATCTGAAGAATGTTGGGAAGACATGTTTTCTTTCCTTGTTGAGACAATGGAGACAGCTATAAAATCATGGCACGAAACTTCTAAAGTGGAGGCTAGAGTTTACTTTCTCCTAGATAAGGAAAAAACAGACACCGAGAAATATGCTCCAGCTGTGAATATTGATAAGGCCTTCGAATCACCCCATACGCACGGCAGTTGTTTTTCATTTCTTAGGCAGTATGCTGAGGACTCTTTCTCCAGAGCAGCTTGTTTGGTCACTCCCAAAAGTATCATGTCTTATCCACAGGTTTGGAAAGGTCAGGGATCAAGGAAATGGAAACATGGGCAACATGATGGTTTCTTTGTTCAATTTGAGACCCCTTTCCTGCGAAAGCTGTGGTTTATTCCTAGTTCTAGTGAACTAGGCCAGATATTGTGCAGGGATCCGGAGGATTTAGACATCGGTGCCCACGAATTGATTCCACGCCTATTCAAACAGTACAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

330

Amino Acids

37.26

Weight (kDa)

8.41

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 944
AccII CGCG 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 925
AciI CCGC 5 cut(s) 5, 29, 111, 172, 179
AclWI GGATC 6 cut(s) 25, 432, 508, 811, 917, 930
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 1 cut(s) 980
AfiI CCNNNNNNNGG 3 cut(s) 178, 253, 616
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 88, 244, 848, 973
AluBI AGCT 7 cut(s) 202, 320, 335, 557, 650, 746, 874
AluI AGCT 7 cut(s) 202, 320, 335, 557, 650, 746, 874
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 4 cut(s) 221, 536, 545, 848
AlwI GGATC 6 cut(s) 25, 432, 508, 811, 917, 930
Aor13HI TCCGGA 1 cut(s) 925
AoxI GGCC 4 cut(s) 129, 291, 666, 904
ApeKI GCWGC 4 cut(s) 113, 176, 320, 743
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 2 cut(s) 35, 176
AsuHPI GGTGA 1 cut(s) 669
AsuII TTCGAA 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 949
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BamHI GGATCC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 4 cut(s) 100, 163, 307, 755
BccI CCATC 2 cut(s) 140, 827
BceAI ACGGC 1 cut(s) 706
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BcoDI GTCTC 4 cut(s) 221, 536, 545, 848
BfaI CTAG 5 cut(s) 594, 611, 888, 894, 902
BisI GCNGC 6 cut(s) 111, 114, 177, 180, 321, 744
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 6 cut(s) 112, 115, 178, 181, 322, 745
BmiI GGNNCC 2 cut(s) 924, 946
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 4 cut(s) 44, 211, 269, 301
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 630, 721
Bpu10I CCTNAGC 2 cut(s) 417, 723
Bpu1102I GCTNAGC 1 cut(s) 203
Bpu14I TTCGAA 1 cut(s) 672
BsaI GGTCTC 2 cut(s) 221, 848
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 925
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 719, 749
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 253, 616
Bse1I ACTGG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 925
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 178, 253, 616
BseMII CTCAG 4 cut(s) 140, 404, 431, 714
BseNI ACTGG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 4 cut(s) 100, 163, 307, 755
BsgI GTGCAG 2 cut(s) 99, 937
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 131, 293, 668, 906
BshNI GGYRCC 1 cut(s) 944
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 926
BslI CCNNNNNNNGG 3 cut(s) 178, 253, 616
BsmAI GTCTC 4 cut(s) 221, 536, 545, 848
BsnI GGCC 4 cut(s) 131, 293, 668, 906
Bso31I GGTCTC 2 cut(s) 221, 848
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 418, 949
Bsp13I TCCGGA 1 cut(s) 925
Bsp143I GATC 5 cut(s) 17, 437, 500, 803, 922
Bsp1720I GCTNAGC 1 cut(s) 203
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 5 cut(s) 5, 29, 111, 172, 179
BspANI GGCC 4 cut(s) 131, 293, 668, 906
BspCNI CTCAG 4 cut(s) 139, 403, 430, 715
BspEI TCCGGA 1 cut(s) 925
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 924, 946
BspPI GGATC 6 cut(s) 25, 432, 508, 811, 917, 930
BspT104I TTCGAA 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 944
BspTNI GGTCTC 2 cut(s) 221, 848
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 5 cut(s) 17, 437, 500, 803, 922
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 978
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 6 cut(s) 126, 203, 390, 417, 710, 723
BstDSI CCRYGG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 614
BstF5I GGATG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 35, 176
BstKTI GATC 5 cut(s) 20, 440, 503, 806, 925
BstMAI GTCTC 4 cut(s) 221, 536, 545, 848
BstMBI GATC 5 cut(s) 17, 437, 500, 803, 922
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 949
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 4 cut(s) 100, 163, 307, 755
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 3 cut(s) 437, 500, 922
BstXI CCANNNNNNTGG 1 cut(s) 789
BstYI RGATCY 3 cut(s) 437, 500, 922
BsuRI GGCC 4 cut(s) 131, 293, 668, 906
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 2 cut(s) 35, 176
Csp6I GTAC 1 cut(s) 979
CviAII CATG 6 cut(s) 295, 523, 567, 772, 821, 830
CviQI GTAC 1 cut(s) 979
DdeI CTNAG 6 cut(s) 126, 203, 390, 417, 710, 723
DpnI GATC 5 cut(s) 19, 439, 502, 805, 924
DpnII GATC 5 cut(s) 17, 437, 500, 803, 922
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 668
Eco31I GGTCTC 2 cut(s) 221, 848
Eco57I CTGAAG 1 cut(s) 525
EcoNI CCTNNNNNAGG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 6 cut(s) 298, 526, 570, 775, 824, 833
FatI CATG 6 cut(s) 294, 522, 566, 771, 820, 829
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 111, 114, 177, 180, 321, 744
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 6 cut(s) 111, 114, 177, 180, 321, 744
FspBI CTAG 5 cut(s) 594, 611, 888, 894, 902
GlaI GCGC 2 cut(s) 34, 175
GluI GCNGC 6 cut(s) 111, 114, 177, 180, 321, 744
GsuI CTGGAG 2 cut(s) 630, 721
HaeIII GGCC 4 cut(s) 131, 293, 668, 906
HapII CCGG 1 cut(s) 926
HhaI GCGC 2 cut(s) 35, 176
Hin1II CATG 6 cut(s) 298, 526, 570, 775, 824, 833
Hin6I GCGC 2 cut(s) 33, 174
HinP1I GCGC 2 cut(s) 33, 174
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 56, 674, 728, 958
HpaII CCGG 1 cut(s) 926
HphI GGTGA 1 cut(s) 669
Hpy166II GTNNAC 2 cut(s) 601, 899
Hpy188I TCNGA 3 cut(s) 22, 481, 505
Hpy188III TCNNGA 6 cut(s) 271, 369, 419, 489, 738, 926
Hpy8I GTNNAC 2 cut(s) 601, 899
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 1 cut(s) 978
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 116, 190, 224, 282, 340, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 6 cut(s) 126, 203, 390, 417, 710, 723
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 6 cut(s) 298, 526, 570, 775, 824, 833
HspAI GCGC 2 cut(s) 33, 174
Kpn2I TCCGGA 1 cut(s) 925
Kzo9I GATC 5 cut(s) 17, 437, 500, 803, 922
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 4 cut(s) 100, 163, 307, 755
LweI GCATC 4 cut(s) 44, 211, 269, 301
MaeI CTAG 5 cut(s) 594, 611, 888, 894, 902
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 754
MalI GATC 5 cut(s) 19, 439, 502, 805, 924
MboI GATC 5 cut(s) 17, 437, 500, 803, 922
MboII GAAGA 2 cut(s) 518, 530
MfeI CAATTG 2 cut(s) 191, 461
MflI RGATCY 3 cut(s) 437, 500, 922
MhlI GDGCHC 2 cut(s) 418, 949
MluCI AATT 7 cut(s) 191, 234, 239, 461, 848, 953, 982
MlyI GAGTC 2 cut(s) 65, 722
MnlI CCTC 7 cut(s) 8, 38, 283, 415, 583, 718, 922
Mph1103I ATGCAT 1 cut(s) 284
MroI TCCGGA 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 2 cut(s) 198, 237
MspA1I CMGCKG 2 cut(s) 113, 650
MspI CCGG 1 cut(s) 926
MunI CAATTG 2 cut(s) 191, 461
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 294
NdeII GATC 5 cut(s) 17, 437, 500, 803, 922
NlaIII CATG 6 cut(s) 298, 526, 570, 775, 824, 833
NlaIV GGNNCC 2 cut(s) 924, 946
NmuCI GTSAC 1 cut(s) 754
NsiI ATGCAT 1 cut(s) 284
NspI RCATGY 1 cut(s) 526
NspV TTCGAA 1 cut(s) 672
PceI AGGCCT 1 cut(s) 668
PciI ACATGT 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 2 cut(s) 674, 958
PkrI GCNGC 6 cut(s) 112, 115, 178, 181, 322, 745
PleI GAGTC 2 cut(s) 64, 722
PpsI GAGTC 2 cut(s) 64, 722
PscI ACATGT 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 924, 946
PsuI RGATCY 3 cut(s) 437, 500, 922
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 980
RsaNI GTAC 1 cut(s) 979
SaqAI TTAA 2 cut(s) 198, 237
SatI GCNGC 6 cut(s) 111, 114, 177, 180, 321, 744
Sau3AI GATC 5 cut(s) 17, 437, 500, 803, 922
SchI GAGTC 2 cut(s) 65, 722
SduI GDGCHC 2 cut(s) 418, 949
SfaNI GCATC 4 cut(s) 44, 211, 269, 301
SfuI TTCGAA 1 cut(s) 672
Sse9I AATT 7 cut(s) 191, 234, 239, 461, 848, 953, 982
SseBI AGGCCT 1 cut(s) 668
SsiI CCGC 5 cut(s) 5, 29, 111, 172, 179
SspI AATATT 1 cut(s) 658
SspMI CTAG 5 cut(s) 594, 611, 888, 894, 902
StuI AGGCCT 1 cut(s) 668
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 978
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 672
TasI AATT 7 cut(s) 191, 234, 239, 461, 848, 953, 982
TatI WGTACW 1 cut(s) 978
TauI GCSGC 2 cut(s) 113, 182
TfiI GAWTC 2 cut(s) 674, 958
Tru1I TTAA 2 cut(s) 198, 237
Tru9I TTAA 2 cut(s) 198, 237
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 4 cut(s) 113, 176, 320, 743
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 2 cut(s) 693, 975
TspRI CASTG 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 614
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 5 cut(s) 594, 611, 888, 894, 902
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.