Rw4G001040

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0012537
Physical Location & Seq
Forward (+)
2012959 .. 2018095
5137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001040.1

Sequence Viewer

Length: 978 bp
ATGGCAGAAGCAGAAGGAGGATCAGATAAGAAGTCTGGTGAGTCTCTGAAAGACAAAGGAAATGAGCAATTCAAAGCTGGGAATTACCTCAAAGCCGCCGCTCTCTACACTCAGGCCATCAAGCAAGACCCTCAAAACCCCACTCTCTATAGCAACCGTGCTGCTGCGTTTCTGCAATTGGTTAAGCTTAACAAAGCCCTTGCTGATGCAGAAACAACAATTACATTGAACCCCAAGTGGGAAAAGGGATATTTCAGGAAAGGATGCATATTAGAGGCCATGGAACAATATGATGATGCTCTGACTGCTTTCCAGACAGCTTTGCAATATAACCCAAAAAGTGTAGAAGTATCACGAAAGATGAAGAGAATTTTTCAGTTGGCGAGAGATAAAAAACGTGCTGAAGAGGTGGAGACAATGAGATCAAATGTTGATATGGCAAAACATTTGGATAAACTGAAATCTGAAATGTCTGGAAAGTGTGGGTCTGAAGAACATGAAGATGTGTTTTCTTTTCTGGTTGAGACAATGGAGGCAGCTGTAAAATCATGGCACGAAACTTCGAAAGTGGAGGCTAGAGTTTACTTTCTCCTTGATAACGAAAAAACAGACACTGAAAAATATGCTCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCCGATACGCACAGAAATTGTTTTCCTTTTCTTAGGCAGTATGCTGAGGATTCTTTCTCCAGAGCCGCTTGCTTGGTGACCCCCAAGAGTATCATGTCTTACCCACAGGTTTGGAAAGGTCAAGGATCAAGGAAATGGAAACATGGGCAACAGGATGGTTTCTTTGTTCAGTTTGAGACACCTTTCTTGCGAAAGTTGTGGTTTATTCCTAGTTCCAATGAACTGGGCCAGACATTGTGCAGGGATCCGGAAGATTTAGACATCAGTGCCCATGAATTAATTCCGCGCCTATTCAAAGTGAAGTCCTCCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046982 GO:0046983
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_11 TPR_2 TPR_8

Protein Analysis

325

Amino Acids

37.1

Weight (kDa)

7.6

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 16 - 83 9.9e-07 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_16 PF13432 18 - 71 2e-06 Tetratricopeptide repeat
TPR_11 PF13414 20 - 60 1.6e-08 TPR repeat
TPR_1 PF00515 82 - 113 6.2e-07 Tetratricopeptide repeat
TPR_2 PF07719 82 - 113 1.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04190
fragaria_vesca FvH4_4g00880 FvH4_4g00880
malus_domestica MD13G1198100.v1.1 MD16G1198200.v1.1
prunus_persica Prupe.1G019800_v2.0.a1
pyrus_communis pycom13g17180 pycom16g16710
rosa_chinensis RchiOBHm_Chr4g0387501
rosa_laevigata RLG00000010117
rosa_multiflora Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005
rosa_roxburghii Rroxscaffold_5G00334180
rosa_rugosa Rorug03G0310200
rosa_samantha Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200
rosa_wichuraiana Rw4G001040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AccII CGCG 1 cut(s) 946
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 4 cut(s) 96, 99, 726, 944
AclWI GGATC 4 cut(s) 28, 793, 899, 912
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 2 cut(s) 423, 510
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 73, 229, 656, 955
AluBI AGCT 4 cut(s) 77, 187, 320, 539
AluI AGCT 4 cut(s) 77, 187, 320, 539
Alw26I GTCTC 4 cut(s) 48, 407, 518, 830
AlwI GGATC 4 cut(s) 28, 793, 899, 912
AlwNI CAGNNNCTG 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 4 cut(s) 114, 276, 648, 886
ApeKI GCWGC 3 cut(s) 161, 164, 536
ApoI RAATTY 1 cut(s) 369
AseI ATTAAT 1 cut(s) 938
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 948
AspS9I GGNCC 1 cut(s) 886
AsuHPI GGTGA 3 cut(s) 50, 651, 748
AsuII TTCGAA 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 931
BamHI GGATCC 1 cut(s) 904
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 148, 151, 548
BccI CCATC 2 cut(s) 125, 809
BcoDI GTCTC 4 cut(s) 48, 407, 518, 830
BfaI CTAG 2 cut(s) 576, 870
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
BlsI GCNGC 6 cut(s) 97, 100, 163, 166, 538, 727
BmgT120I GGNCC 1 cut(s) 886
BmiI GGNNCC 1 cut(s) 906
BmrI ACTGGG 1 cut(s) 893
BmsI GCATC 3 cut(s) 196, 254, 286
BmuI ACTGGG 1 cut(s) 893
BpmI CTGGAG 2 cut(s) 612, 703
Bpu10I CCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 907
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 629, 888
BseAI TCCGGA 1 cut(s) 907
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 269, 820
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 125, 696
BseNI ACTGG 2 cut(s) 629, 888
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 3 cut(s) 148, 151, 548
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 919
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 4 cut(s) 116, 278, 650, 888
BsiSI CCGG 1 cut(s) 908
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 48, 407, 518, 830
BsnI GGCC 4 cut(s) 116, 278, 650, 888
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 931
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 4 cut(s) 20, 422, 785, 904
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 4 cut(s) 96, 99, 726, 944
BspANI GGCC 4 cut(s) 116, 278, 650, 888
BspCNI CTCAG 2 cut(s) 124, 697
BspEI TCCGGA 1 cut(s) 907
BspFNI CGCG 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 906
BspPI GGATC 4 cut(s) 28, 793, 899, 912
BspT104I TTCGAA 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 629, 888
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 4 cut(s) 20, 422, 785, 904
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 359, 399
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 3 cut(s) 111, 692, 705
BstDSI CCRYGG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 2 cut(s) 269, 820
BstFNI CGCG 1 cut(s) 946
BstHHI GCGC 1 cut(s) 948
BstKTI GATC 4 cut(s) 23, 425, 788, 907
BstMAI GTCTC 4 cut(s) 48, 407, 518, 830
BstMBI GATC 4 cut(s) 20, 422, 785, 904
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 736
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 3 cut(s) 148, 151, 548
BstX2I RGATCY 1 cut(s) 904
BstXI CCANNNNNNTGG 2 cut(s) 771, 883
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 4 cut(s) 116, 278, 650, 888
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 269, 820
BtsIMutI CAGTG 2 cut(s) 612, 931
Cac8I GCNNGC 1 cut(s) 730
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 886
CviAII CATG 6 cut(s) 280, 497, 549, 754, 803, 932
DdeI CTNAG 3 cut(s) 111, 692, 705
DpnI GATC 4 cut(s) 22, 424, 787, 906
DpnII GATC 4 cut(s) 20, 422, 785, 904
Eam1104I CTCTTC 2 cut(s) 359, 399
EarI CTCTTC 2 cut(s) 359, 399
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 650
Eco57I CTGAAG 2 cut(s) 423, 510
Eco91I GGTNACC 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 283, 500, 552, 757, 806, 935
FatI CATG 6 cut(s) 279, 496, 548, 753, 802, 931
Fnu4HI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
FokI GGATG 2 cut(s) 276, 827
Fsp4HI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
FspBI CTAG 2 cut(s) 576, 870
GlaI GCGC 1 cut(s) 947
GluI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 2 cut(s) 612, 703
HaeIII GGCC 4 cut(s) 116, 278, 650, 888
HapII CCGG 1 cut(s) 908
HhaI GCGC 1 cut(s) 948
Hin1II CATG 6 cut(s) 283, 500, 552, 757, 806, 935
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 41, 656, 710
HpaII CCGG 1 cut(s) 908
HphI GGTGA 3 cut(s) 50, 651, 748
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 5 cut(s) 25, 48, 303, 466, 490
Hpy188III TCNNGA 6 cut(s) 256, 313, 354, 474, 720, 908
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 5 cut(s) 175, 209, 267, 325, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 111, 692, 705
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 6 cut(s) 283, 500, 552, 757, 806, 935
HspAI GCGC 1 cut(s) 946
Kpn2I TCCGGA 1 cut(s) 907
Kzo9I GATC 4 cut(s) 20, 422, 785, 904
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 3 cut(s) 148, 151, 548
LweI GCATC 3 cut(s) 196, 254, 286
MaeI CTAG 2 cut(s) 576, 870
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 736
MalI GATC 4 cut(s) 22, 424, 787, 906
MbiI CCGCTC 1 cut(s) 101
MboI GATC 4 cut(s) 20, 422, 785, 904
MboII GAAGA 5 cut(s) 376, 416, 503, 512, 923
MfeI CAATTG 1 cut(s) 176
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 1 cut(s) 931
MluCI AATT 9 cut(s) 68, 82, 176, 219, 369, 676, 935, 939, 970
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 9 cut(s) 11, 98, 141, 268, 400, 526, 565, 700, 976
Mph1103I ATGCAT 1 cut(s) 269
MroI TCCGGA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 939
MseI TTAA 3 cut(s) 183, 189, 938
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 1 cut(s) 908
MunI CAATTG 1 cut(s) 176
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 279
NdeII GATC 4 cut(s) 20, 422, 785, 904
NlaIII CATG 6 cut(s) 283, 500, 552, 757, 806, 935
NlaIV GGNNCC 1 cut(s) 906
NmuCI GTSAC 1 cut(s) 736
NsiI ATGCAT 1 cut(s) 269
NspV TTCGAA 1 cut(s) 563
PceI AGGCCT 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 2 cut(s) 656, 710
PkrI GCNGC 6 cut(s) 97, 100, 163, 166, 538, 727
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 938
PspEI GGTNACC 1 cut(s) 736
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 906
PspPI GGNCC 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 3 cut(s) 183, 189, 938
SatI GCNGC 6 cut(s) 96, 99, 162, 165, 537, 726
Sau3AI GATC 4 cut(s) 20, 422, 785, 904
Sau96I GGNCC 1 cut(s) 886
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 931
SfaNI GCATC 3 cut(s) 196, 254, 286
SfcI CTRYAG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 9 cut(s) 68, 82, 176, 219, 369, 676, 935, 939, 970
SseBI AGGCCT 1 cut(s) 650
SsiI CCGC 4 cut(s) 96, 99, 726, 944
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 576, 870
StuI AGGCCT 1 cut(s) 650
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 563
TasI AATT 9 cut(s) 68, 82, 176, 219, 369, 676, 935, 939, 970
TauI GCSGC 3 cut(s) 98, 101, 728
TfiI GAWTC 2 cut(s) 656, 710
Tru1I TTAA 3 cut(s) 183, 189, 938
Tru9I TTAA 3 cut(s) 183, 189, 938
TscAI CASTG 2 cut(s) 619, 931
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 3 cut(s) 161, 164, 536
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 5 cut(s) 377, 513, 894, 948, 963
TspRI CASTG 2 cut(s) 619, 931
VspI ATTAAT 1 cut(s) 938
XapI RAATTY 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 2 cut(s) 576, 870
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.