Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04190 |
| fragaria_vesca | FvH4_4g00880 FvH4_4g00880 |
| malus_domestica | MD13G1198100.v1.1 MD16G1198200.v1.1 |
| prunus_persica | Prupe.1G019800_v2.0.a1 |
| pyrus_communis | pycom13g17180 pycom16g16710 |
| rosa_chinensis | RchiOBHm_Chr4g0387501 |
| rosa_laevigata | RLG00000010117 |
| rosa_multiflora | Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00334180 |
| rosa_rugosa | Rorug03G0310200 |
| rosa_samantha | Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200 |
| rosa_wichuraiana | Rw4G001040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 559 |
| AccIII | TCCGGA | 1 cut(s) | 934 |
| AciI | CCGC | 5 cut(s) | 5, 101, 120, 233, 877 |
| AclWI | GGATC | 5 cut(s) | 31, 441, 517, 926, 939 |
| AcuI | CTGAAG | 1 cut(s) | 534 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 262, 625 |
| AgsI | TTSAA | 6 cut(s) | 97, 200, 253, 683, 816, 982 |
| AluBI | AGCT | 7 cut(s) | 62, 211, 344, 566, 659, 755, 883 |
| AluI | AGCT | 7 cut(s) | 62, 211, 344, 566, 659, 755, 883 |
| Alw26I | GTCTC | 4 cut(s) | 72, 230, 545, 857 |
| AlwI | GGATC | 5 cut(s) | 31, 441, 517, 926, 939 |
| Aor13HI | TCCGGA | 1 cut(s) | 934 |
| AoxI | GGCC | 2 cut(s) | 138, 913 |
| ApeKI | GCWGC | 5 cut(s) | 8, 122, 185, 188, 752 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 966 |
| AspS9I | GGNCC | 1 cut(s) | 913 |
| AsuHPI | GGTGA | 2 cut(s) | 418, 775 |
| BaeGI | GKGCMC | 2 cut(s) | 41, 958 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 357, 390 |
| BamHI | GGATCC | 1 cut(s) | 931 |
| BbvCI | CCTCAGC | 1 cut(s) | 732 |
| BbvI | GCAGC | 5 cut(s) | 20, 109, 172, 200, 764 |
| BccI | CCATC | 2 cut(s) | 149, 836 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 632, 666 |
| BcoDI | GTCTC | 4 cut(s) | 72, 230, 545, 857 |
| BfaI | CTAG | 3 cut(s) | 603, 620, 897 |
| BfmI | CTRYAG | 2 cut(s) | 172, 186 |
| BisI | GCNGC | 7 cut(s) | 6, 9, 120, 123, 186, 189, 753 |
| BlpI | GCTNAGC | 1 cut(s) | 212 |
| BlsI | GCNGC | 7 cut(s) | 7, 10, 121, 124, 187, 190, 754 |
| BmgT120I | GGNCC | 1 cut(s) | 913 |
| BmiI | GGNNCC | 1 cut(s) | 933 |
| BmrI | ACTGGG | 2 cut(s) | 253, 920 |
| BmsI | GCATC | 2 cut(s) | 220, 310 |
| BmuI | ACTGGG | 2 cut(s) | 253, 920 |
| BpmI | CTGGAG | 1 cut(s) | 639 |
| Bpu10I | CCTNAGC | 1 cut(s) | 732 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 212 |
| BsaI | GGTCTC | 1 cut(s) | 857 |
| BsaWI | WCCGGW | 1 cut(s) | 934 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 262, 625 |
| Bse1I | ACTGG | 2 cut(s) | 259, 915 |
| BseAI | TCCGGA | 1 cut(s) | 934 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 262, 625 |
| BseMII | CTCAG | 4 cut(s) | 54, 149, 413, 723 |
| BseNI | ACTGG | 2 cut(s) | 259, 915 |
| BseRI | GAGGAG | 1 cut(s) | 72 |
| BseSI | GKGCMC | 2 cut(s) | 41, 958 |
| BseXI | GCAGC | 5 cut(s) | 20, 109, 172, 200, 764 |
| BsgI | GTGCAG | 2 cut(s) | 108, 946 |
| BshFI | GGCC | 2 cut(s) | 140, 915 |
| BsiSI | CCGG | 1 cut(s) | 935 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 262, 625 |
| BsmAI | GTCTC | 4 cut(s) | 72, 230, 545, 857 |
| BsnI | GGCC | 2 cut(s) | 140, 915 |
| Bso31I | GGTCTC | 1 cut(s) | 857 |
| Bsp1286I | GDGCHC | 2 cut(s) | 41, 958 |
| Bsp13I | TCCGGA | 1 cut(s) | 934 |
| Bsp143I | GATC | 4 cut(s) | 23, 446, 509, 931 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 212 |
| BspACI | CCGC | 5 cut(s) | 5, 101, 120, 233, 877 |
| BspANI | GGCC | 2 cut(s) | 140, 915 |
| BspCNI | CTCAG | 4 cut(s) | 55, 148, 412, 724 |
| BspEI | TCCGGA | 1 cut(s) | 934 |
| BspLI | GGNNCC | 1 cut(s) | 933 |
| BspMAI | CTGCAG | 1 cut(s) | 190 |
| BspPI | GGATC | 5 cut(s) | 31, 441, 517, 926, 939 |
| BspTNI | GGTCTC | 1 cut(s) | 857 |
| BsrI | ACTGG | 2 cut(s) | 259, 915 |
| BssMI | GATC | 4 cut(s) | 23, 446, 509, 931 |
| Bst4CI | ACNGT | 2 cut(s) | 182, 987 |
| BstC8I | GCNNGC | 1 cut(s) | 757 |
| BstDEI | CTNAG | 6 cut(s) | 63, 135, 212, 399, 719, 732 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 623 |
| BstKTI | GATC | 4 cut(s) | 26, 449, 512, 934 |
| BstMAI | GTCTC | 4 cut(s) | 72, 230, 545, 857 |
| BstMBI | GATC | 4 cut(s) | 23, 446, 509, 931 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstSFI | CTRYAG | 2 cut(s) | 172, 186 |
| BstSLI | GKGCMC | 2 cut(s) | 41, 958 |
| BstV1I | GCAGC | 5 cut(s) | 20, 109, 172, 200, 764 |
| BstX2I | RGATCY | 3 cut(s) | 446, 509, 931 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 698, 798, 910 |
| BstYI | RGATCY | 3 cut(s) | 446, 509, 931 |
| BsuRI | GGCC | 2 cut(s) | 140, 915 |
| BtsIMutI | CAGTG | 3 cut(s) | 266, 903, 958 |
| Cac8I | GCNNGC | 1 cut(s) | 757 |
| Cfr13I | GGNCC | 1 cut(s) | 913 |
| CviAII | CATG | 7 cut(s) | 576, 581, 698, 781, 830, 839, 959 |
| DdeI | CTNAG | 6 cut(s) | 63, 135, 212, 399, 719, 732 |
| DpnI | GATC | 4 cut(s) | 25, 448, 511, 933 |
| DpnII | GATC | 4 cut(s) | 23, 446, 509, 931 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 559 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 559 |
| Eco31I | GGTCTC | 1 cut(s) | 857 |
| Eco32I | GATATC | 1 cut(s) | 949 |
| Eco57I | CTGAAG | 1 cut(s) | 534 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 623 |
| EcoRV | GATATC | 1 cut(s) | 949 |
| FaeI | CATG | 7 cut(s) | 579, 584, 701, 784, 833, 842, 962 |
| FatI | CATG | 7 cut(s) | 575, 580, 697, 780, 829, 838, 958 |
| FauI | CCCGC | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 9, 120, 123, 186, 189, 753 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 9, 120, 123, 186, 189, 753 |
| FspBI | CTAG | 3 cut(s) | 603, 620, 897 |
| GluI | GCNGC | 7 cut(s) | 6, 9, 120, 123, 186, 189, 753 |
| GsuI | CTGGAG | 1 cut(s) | 639 |
| HaeIII | GGCC | 2 cut(s) | 140, 915 |
| HapII | CCGG | 1 cut(s) | 935 |
| Hin1II | CATG | 7 cut(s) | 579, 584, 701, 784, 833, 842, 962 |
| HindIII | AAGCTT | 1 cut(s) | 209 |
| HinfI | GANTC | 7 cut(s) | 65, 560, 683, 737, 766, 967, 992 |
| HpaII | CCGG | 1 cut(s) | 935 |
| HphI | GGTGA | 2 cut(s) | 418, 775 |
| Hpy166II | GTNNAC | 1 cut(s) | 610 |
| Hpy188I | TCNGA | 4 cut(s) | 72, 490, 514, 991 |
| Hpy188III | TCNNGA | 4 cut(s) | 280, 378, 550, 935 |
| Hpy8I | GTNNAC | 1 cut(s) | 610 |
| HpyAV | CCTTC | 1 cut(s) | 262 |
| HpyCH4III | ACNGT | 2 cut(s) | 182, 987 |
| HpyCH4V | TGCA | 5 cut(s) | 125, 188, 291, 856, 927 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 6 cut(s) | 63, 135, 212, 399, 719, 732 |
| Hsp92II | CATG | 7 cut(s) | 579, 584, 701, 784, 833, 842, 962 |
| Kpn2I | TCCGGA | 1 cut(s) | 934 |
| Kzo9I | GATC | 4 cut(s) | 23, 446, 509, 931 |
| LmnI | GCTCC | 2 cut(s) | 59, 658 |
| Lsp1109I | GCAGC | 5 cut(s) | 20, 109, 172, 200, 764 |
| LweI | GCATC | 2 cut(s) | 220, 310 |
| MaeI | CTAG | 3 cut(s) | 603, 620, 897 |
| MaeIII | GTNAC | 2 cut(s) | 176, 763 |
| MalI | GATC | 4 cut(s) | 25, 448, 511, 933 |
| MboI | GATC | 4 cut(s) | 23, 446, 509, 931 |
| MboII | GAAGA | 4 cut(s) | 188, 527, 539, 641 |
| MfeI | CAATTG | 1 cut(s) | 200 |
| MflI | RGATCY | 3 cut(s) | 446, 509, 931 |
| MhlI | GDGCHC | 2 cut(s) | 41, 958 |
| MluCI | AATT | 5 cut(s) | 200, 243, 248, 857, 962 |
| MlyI | GAGTC | 3 cut(s) | 74, 569, 760 |
| MroI | TCCGGA | 1 cut(s) | 934 |
| MroXI | GAANNNNTTC | 1 cut(s) | 966 |
| MseI | TTAA | 2 cut(s) | 207, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 696 |
| MspA1I | CMGCKG | 3 cut(s) | 122, 566, 659 |
| MspI | CCGG | 1 cut(s) | 935 |
| MunI | CAATTG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NdeII | GATC | 4 cut(s) | 23, 446, 509, 931 |
| NlaIII | CATG | 7 cut(s) | 579, 584, 701, 784, 833, 842, 962 |
| NlaIV | GGNNCC | 1 cut(s) | 933 |
| NmuCI | GTSAC | 1 cut(s) | 763 |
| PdmI | GAANNNNTTC | 1 cut(s) | 966 |
| PfeI | GAWTC | 4 cut(s) | 683, 737, 967, 992 |
| PkrI | GCNGC | 7 cut(s) | 7, 10, 121, 124, 187, 190, 754 |
| PleI | GAGTC | 3 cut(s) | 73, 568, 760 |
| PpsI | GAGTC | 3 cut(s) | 73, 568, 760 |
| PspN4I | GGNNCC | 1 cut(s) | 933 |
| PspPI | GGNCC | 1 cut(s) | 913 |
| PstI | CTGCAG | 1 cut(s) | 190 |
| PsuI | RGATCY | 3 cut(s) | 446, 509, 931 |
| PvuII | CAGCTG | 2 cut(s) | 566, 659 |
| RseI | CAYNNNNRTG | 1 cut(s) | 696 |
| SaqAI | TTAA | 2 cut(s) | 207, 246 |
| SatI | GCNGC | 7 cut(s) | 6, 9, 120, 123, 186, 189, 753 |
| Sau3AI | GATC | 4 cut(s) | 23, 446, 509, 931 |
| Sau96I | GGNCC | 1 cut(s) | 913 |
| SchI | GAGTC | 3 cut(s) | 74, 569, 760 |
| SduI | GDGCHC | 2 cut(s) | 41, 958 |
| SfaNI | GCATC | 2 cut(s) | 220, 310 |
| SfcI | CTRYAG | 2 cut(s) | 172, 186 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 696 |
| Sse9I | AATT | 5 cut(s) | 200, 243, 248, 857, 962 |
| SsiI | CCGC | 5 cut(s) | 5, 101, 120, 233, 877 |
| SspI | AATATT | 1 cut(s) | 667 |
| SspMI | CTAG | 3 cut(s) | 603, 620, 897 |
| TaaI | ACNGT | 2 cut(s) | 182, 987 |
| TaqI | TCGA | 1 cut(s) | 549 |
| TasI | AATT | 5 cut(s) | 200, 243, 248, 857, 962 |
| TauI | GCSGC | 2 cut(s) | 8, 122 |
| TfiI | GAWTC | 4 cut(s) | 683, 737, 967, 992 |
| Tru1I | TTAA | 2 cut(s) | 207, 246 |
| Tru9I | TTAA | 2 cut(s) | 207, 246 |
| TscAI | CASTG | 3 cut(s) | 266, 910, 958 |
| TseFI | GTSAC | 1 cut(s) | 763 |
| TseI | GCWGC | 5 cut(s) | 8, 122, 185, 188, 752 |
| Tsp45I | GTSAC | 1 cut(s) | 763 |
| TspDTI | ATGAA | 4 cut(s) | 597, 702, 975, 984 |
| TspRI | CASTG | 3 cut(s) | 266, 910, 958 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 623 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |
| XmnI | GAANNNNTTC | 1 cut(s) | 966 |
| XspI | CTAG | 3 cut(s) | 603, 620, 897 |