Tetratricopeptide repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04190 |
| fragaria_vesca | FvH4_4g00880 FvH4_4g00880 |
| malus_domestica | MD13G1198100.v1.1 MD16G1198200.v1.1 |
| prunus_persica | Prupe.1G019800_v2.0.a1 |
| pyrus_communis | pycom13g17180 pycom16g16710 |
| rosa_chinensis | RchiOBHm_Chr4g0387501 |
| rosa_laevigata | RLG00000010117 |
| rosa_multiflora | Rmu_sc0009161.1_g000001 Rmu_sc0011414.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00334180 |
| rosa_rugosa | Rorug03G0310200 |
| rosa_samantha | Rh4AG016300 Rh4BG011000 Rh4CG017500 Rh4DG012200 |
| rosa_wichuraiana | Rw4G001040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AfaI | GTAC | 1 cut(s) | 204 |
| AspS9I | GGNCC | 1 cut(s) | 177 |
| AvaII | GGWCC | 1 cut(s) | 177 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 186 |
| BbsI | GAAGAC | 1 cut(s) | 134 |
| BciVI | GTATCC | 1 cut(s) | 180 |
| BfuI | GTATCC | 1 cut(s) | 180 |
| BmcAI | AGTACT | 1 cut(s) | 204 |
| Bme18I | GGWCC | 1 cut(s) | 177 |
| BmgT120I | GGNCC | 1 cut(s) | 177 |
| BpiI | GAAGAC | 1 cut(s) | 134 |
| Bse3DI | GCAATG | 1 cut(s) | 163 |
| BseMI | GCAATG | 1 cut(s) | 163 |
| BsgI | GTGCAG | 1 cut(s) | 102 |
| BslFI | GGGAC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 88 |
| Bsp143I | GATC | 1 cut(s) | 163 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BsrDI | GCAATG | 1 cut(s) | 163 |
| BssMI | GATC | 1 cut(s) | 163 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| BstDEI | CTNAG | 1 cut(s) | 98 |
| BstKTI | GATC | 1 cut(s) | 166 |
| BstMBI | GATC | 1 cut(s) | 163 |
| BstV2I | GAAGAC | 1 cut(s) | 134 |
| BsuI | GTATCC | 1 cut(s) | 180 |
| CciI | TCATGA | 1 cut(s) | 166 |
| Cfr13I | GGNCC | 1 cut(s) | 177 |
| Csp6I | GTAC | 1 cut(s) | 203 |
| CviAII | CATG | 1 cut(s) | 167 |
| CviJI | RGCY | 1 cut(s) | 16 |
| CviKI_1 | RGCY | 1 cut(s) | 16 |
| CviQI | GTAC | 1 cut(s) | 203 |
| DdeI | CTNAG | 1 cut(s) | 98 |
| DpnI | GATC | 1 cut(s) | 165 |
| DpnII | GATC | 1 cut(s) | 163 |
| Eco47I | GGWCC | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| FaeI | CATG | 1 cut(s) | 170 |
| FaiI | YATR | 2 cut(s) | 40, 168 |
| FaqI | GGGAC | 1 cut(s) | 88 |
| FatI | CATG | 1 cut(s) | 166 |
| Hin1II | CATG | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 167 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 119 |
| HpyF3I | CTNAG | 1 cut(s) | 98 |
| Hsp92II | CATG | 1 cut(s) | 170 |
| Kzo9I | GATC | 1 cut(s) | 163 |
| LpnPI | CCDG | 4 cut(s) | 77, 169, 193, 204 |
| MalI | GATC | 1 cut(s) | 165 |
| MboI | GATC | 1 cut(s) | 163 |
| MboII | GAAGA | 4 cut(s) | 139, 173, 182, 206 |
| MnlI | CCTC | 3 cut(s) | 6, 101, 139 |
| NdeII | GATC | 1 cut(s) | 163 |
| NlaIII | CATG | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PspPI | GGNCC | 1 cut(s) | 177 |
| RsaI | GTAC | 1 cut(s) | 204 |
| RsaNI | GTAC | 1 cut(s) | 203 |
| Sau3AI | GATC | 1 cut(s) | 163 |
| Sau96I | GGNCC | 1 cut(s) | 177 |
| ScaI | AGTACT | 1 cut(s) | 204 |
| SetI | ASST | 1 cut(s) | 193 |
| SgeI | CNNG | 8 cut(s) | 34, 104, 124, 136, 179, 192, 196, 203 |
| SinI | GGWCC | 1 cut(s) | 177 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TatI | WGTACW | 1 cut(s) | 202 |
| TspDTI | ATGAA | 4 cut(s) | 84, 174, 183, 213 |
| TspGWI | ACGGA | 1 cut(s) | 63 |
| VpaK11BI | GGWCC | 1 cut(s) | 177 |
| ZrmI | AGTACT | 1 cut(s) | 204 |