AT1G04290
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009521
Physical Location & Seq
Reverse (-)
1147297 .. 1148533
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04290.1

Sequence Viewer

Length: 468 bp
ATGGATCTAGAATCGGTGAAAAAGTATCTGGAAGGAGATGAAGACGAAAAGGCCAAGGAACCAATGGTGGCGAAATTACCACACAGATTCCTCGAACGATTCGTAACCAATGGTCTTAAAGTGGATCTCATCGAACCTGGCCGTATCGTCTGCTCCATGAAAATCCCTCCTCATCTCCTGAACGCAGGGAAATTCTTACACGGAGGAGCAACGGCGACGCTGGTGGATTTGATAGGATCAGCAGTGATCTACACAGCCGGAGCTTCACATTCCGGAGTTTCAGTGGAGATCAATGTTTCATACCTTGATGCTGCTTTTCTCGATGAAGAGATAGAGATAGAATCAAAGGCATTGCGTGTTGGTAAAGCTGTAGCAGTAGTGAGTGTGGAGCTGAGGAAGAAGACGACTGGTAAGATTATTGCTCAAGGTCGTCATACCAAGTACTTTGCTCCTCGTTCCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

7.85

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 64 - 138 3.1e-16 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 272
AclWI GGATC 3 cut(s) 12, 132, 244
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 443
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 263, 368, 391
AluI AGCT 3 cut(s) 263, 368, 391
AlwI GGATC 3 cut(s) 12, 132, 244
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 51, 139
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 48, 407
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 126, 228
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 48, 407
Bpu10I CCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 350
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 3 cut(s) 159, 219, 441
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 2 cut(s) 53, 141
BsiSI CCGG 2 cut(s) 258, 273
BsnI GGCC 2 cut(s) 53, 141
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 5 cut(s) 4, 124, 236, 246, 288
BspANI GGCC 2 cut(s) 53, 141
BspCNI CTCAG 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 3 cut(s) 12, 132, 244
BsrDI GCAATG 1 cut(s) 350
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 5 cut(s) 4, 124, 236, 246, 288
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 392
BstKTI GATC 5 cut(s) 7, 127, 239, 249, 291
BstMBI GATC 5 cut(s) 4, 124, 236, 246, 288
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 2 cut(s) 48, 407
BstX2I RGATCY 2 cut(s) 4, 124
BstYI RGATCY 2 cut(s) 4, 124
BsuRI GGCC 2 cut(s) 53, 141
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 249, 288
CseI GACGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 442
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 53, 141, 257, 263, 368, 391
CviKI_1 RGCY 6 cut(s) 53, 141, 257, 263, 368, 391
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 392
DpnI GATC 5 cut(s) 6, 126, 238, 248, 290
DpnII GATC 5 cut(s) 4, 124, 236, 246, 288
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 158, 301, 435
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 53, 141
HapII CCGG 2 cut(s) 258, 273
HgaI GACGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 160
HinfI GANTC 4 cut(s) 11, 87, 99, 341
HpaII CCGG 2 cut(s) 258, 273
HphI GGTGA 1 cut(s) 28
Hpy188III TCNNGA 5 cut(s) 8, 29, 178, 273, 320
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 392
Hsp92II CATG 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 5 cut(s) 4, 124, 236, 246, 288
LmnI GCTCC 5 cut(s) 158, 206, 260, 388, 454
LpnPI CCDG 9 cut(s) 14, 123, 150, 171, 191, 206, 271, 286, 393
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 6, 126, 238, 248, 290
MboI GATC 5 cut(s) 4, 124, 236, 246, 288
MboII GAAGA 4 cut(s) 53, 338, 409, 412
MflI RGATCY 2 cut(s) 4, 124
MluCI AATT 2 cut(s) 74, 191
MnlI CCTC 6 cut(s) 101, 177, 180, 197, 387, 462
MroI TCCGGA 1 cut(s) 272
MseI TTAA 1 cut(s) 117
MspI CCGG 2 cut(s) 258, 273
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
NdeII GATC 5 cut(s) 4, 124, 236, 246, 288
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 4 cut(s) 11, 87, 99, 341
PkrI GCNGC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 60
PsuI RGATCY 2 cut(s) 4, 124
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 5 cut(s) 4, 124, 236, 246, 288
ScaI AGTACT 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 138
SetI ASST 7 cut(s) 139, 265, 306, 370, 393, 430, 465
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 2 cut(s) 74, 191
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 3 cut(s) 93, 132, 321
TasI AATT 2 cut(s) 74, 191
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 4 cut(s) 11, 87, 99, 341
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 249, 288
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 54, 173, 288, 339
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 2 cut(s) 249, 288
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.