Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009521

Physical Location & Seq

Genomic Coordinates Reverse (-)

5424698 .. 5426373

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G105000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGAAAGAAGGAAATGAGGAAACAAGTATGGAGTCAGTGAAGAAGTTCTTGGAGAAAGAAGGTGAAATGGCAATCTCCATGGATGGGCTGCCAGATAAGTTCTTTGAGCCCTTTATCATGAAAGGCATTCAAGTTGATCTCCTTGAACCCGGTCGTATTGTTTGCTCCTTCAAAGTACCCCCTCGTTTGCTGAATGGAGGCAATTTTATGCATGGTGGAGCCACAGCAACCCTTGTGGATTTGATAGGGTCAGCTGCAATCCTCACCGTCGGAACTCCCAGCGTTGGAGTTTCAGTGGAGATCAATGTTTCATACTTGGATTCTGCTTACCCTGGTGAGGAAGTTGAGGTTGAGGCCAAGGCTTTACGAGTTGGGAAGGCTGTTGGTGTTGCCAGTGTTGAGTTAAGGAAGAAGAAGACAGGCAAAATTATAGCTCAGGGCCGTCATACCAAGTATCTTGCTCTCGCTAGCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

161

Amino Acids

17.15

Weight (kDa)

7.79

Isoelectric Point (pI)

19.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04290 AT1G04290
fragaria_vesca	FvH4_3g11670 FvH4_3g11670
malus_domestica	MD05G1260500.v1.1 MD10G1239800.v1.1
prunus_persica	Prupe.4G104800_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.5G159500_v2.0.a1
rosa_laevigata	RLG00000032391 RLG00000032403
rosa_multiflora	Rmu_sc0000563.1_g000005 Rmu_sc0004438.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059050 Rroxscaffold_1G00073830
rosa_rugosa	Rorug05G0046300
rosa_samantha	Rh5AG137200 Rh5BG136000 Rh5CG148100 Rh5DG137100
rosa_wichuraiana	Rw5G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	3 cut(s)	87, 287, 340
AgsI	TTSAA	3 cut(s)	134, 149, 175
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	257, 437
AluI	AGCT	2 cut(s)	257, 437
AoxI	GGCC	2 cut(s)	357, 442
ApeKI	GCWGC	2 cut(s)	91, 257
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	77, 259, 350
AsuNHI	GCTAGC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	78, 244
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	92, 258
BlsI	GCNGC	2 cut(s)	93, 259
Bme1390I	CCNGG	2 cut(s)	153, 336
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	153, 336
BmtI	GCTAGC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	81, 334, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 287, 340
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	81, 334, 360
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	87, 287, 340
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	78, 244
BseYI	CCCAGC	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	359, 444
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	87, 287, 340
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	359, 444
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	139, 303
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	2 cut(s)	359, 444
BspCNI	CTCAG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	81, 334, 360
BssMI	GATC	2 cut(s)	139, 303
BssT1I	CCWWGG	2 cut(s)	81, 360
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	142, 306
BstMBI	GATC	2 cut(s)	139, 303
BstMCI	CGRYCG	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	151, 334
BstV1I	GCAGC	2 cut(s)	78, 244
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	359, 444
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	45, 303, 403
Cac8I	GCNNGC	1 cut(s)	472
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	179
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	3 cut(s)	82, 121, 215
CviJI	RGCY	9 cut(s)	91, 112, 224, 257, 359, 365, 383, 437, 444
CviKI_1	RGCY	9 cut(s)	91, 112, 224, 257, 359, 365, 383, 437, 444
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	141, 305
DpnII	GATC	2 cut(s)	139, 303
Eco130I	CCWWGG	2 cut(s)	81, 360
Eco24I	GRGCYC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	81, 360
EcoT22I	ATGCAT	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	81, 360
FaeI	CATG	3 cut(s)	85, 124, 218
FaiI	YATR	8 cut(s)	32, 83, 122, 212, 216, 316, 434, 450
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	81, 120, 214
Fnu4HI	GCNGC	2 cut(s)	92, 258
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	92, 258
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	2 cut(s)	92, 258
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	359, 444
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	3 cut(s)	85, 124, 218
HinfI	GANTC	2 cut(s)	35, 323
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	77, 259, 350
Hpy188I	TCNGA	2 cut(s)	275, 482
Hpy188III	TCNNGA	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	5, 56, 181, 373
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	214, 260
HpyF3I	CTNAG	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	85, 124, 218
Kzo9I	GATC	2 cut(s)	139, 303
LmnI	GCTCC	2 cut(s)	173, 221
LpnPI	CCDG	8 cut(s)	108, 166, 295, 321, 348, 408, 409, 425
Lsp1109I	GCAGC	2 cut(s)	78, 244
MaeI	CTAG	1 cut(s)	471
MalI	GATC	2 cut(s)	141, 305
MboI	GATC	2 cut(s)	139, 303
MboII	GAAGA	5 cut(s)	16, 55, 424, 427, 430
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	205, 429
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	253, 268
MnlI	CCTC	7 cut(s)	13, 194, 195, 275, 334, 343, 349
Mph1103I	ATGCAT	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	153, 336
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	336
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	139, 303
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	3 cut(s)	85, 124, 218
NlaIV	GGNNCC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	216
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	93, 259
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	92, 258
Sau3AI	GATC	2 cut(s)	139, 303
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	153, 336
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	67, 259, 354, 439
Sse9I	AATT	2 cut(s)	205, 429
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	2 cut(s)	151, 334
StyI	CCWWGG	2 cut(s)	81, 360
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	2 cut(s)	205, 429
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	3 cut(s)	45, 303, 403
TseI	GCWGC	2 cut(s)	91, 257
TspDTI	ATGAA	3 cut(s)	17, 137, 303
TspRI	CASTG	3 cut(s)	45, 303, 403
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.