Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009521

Physical Location & Seq

Genomic Coordinates Forward (+)

14105425 .. 14105992

Gene Structure 568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGTCAGTGAAGAAGTTCTTGAAGAAAGAAGGTGAAATGGCAATCACCATGGATGGGCTGCCAGAGAAGTTCTTTGAGCCCTTTATCATGAAAGGCATTCAAGTCGATCTCCTTAAACCCGGTCGTATTGTTTGCTCCTTCAAAGGAACCTATCGTTTGCTGAATGGAGGCAATTTTATGCATGGTGGAGCCACAACCACCCTTGTGGATTTGATAGGGTCAGCTGCAATCCTCACCATCGGAACTCCCAGCTTTGGAATTTCAGTGGAGATTAACGTTTCATACTTAGATTCTGCTTACCCTGGTGAGGAAGTTGAGATTGAGGCCAAGGCTTTACGAGTTGGGAAGGGTGTTGGTGTTGCCAGTGTTGAGTTAAGGAAGAAGAAGACAGGCAAAATTATAGCTCAGGGCCGTCATACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

143

Amino Acids

15.32

Weight (kDa)

9.58

Isoelectric Point (pI)

18.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04290 AT1G04290
fragaria_vesca	FvH4_3g11670 FvH4_3g11670
malus_domestica	MD05G1260500.v1.1 MD10G1239800.v1.1
prunus_persica	Prupe.4G104800_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.5G159500_v2.0.a1
rosa_laevigata	RLG00000032391 RLG00000032403
rosa_multiflora	Rmu_sc0000563.1_g000005 Rmu_sc0004438.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059050 Rroxscaffold_1G00073830
rosa_rugosa	Rorug05G0046300
rosa_samantha	Rh5AG137200 Rh5BG136000 Rh5CG148100 Rh5DG137100
rosa_wichuraiana	Rw5G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	57, 257, 310
AgsI	TTSAA	3 cut(s)	25, 104, 145
AjnI	CCWGG	1 cut(s)	304
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	227, 255, 407
AluI	AGCT	3 cut(s)	227, 255, 407
AoxI	GGCC	2 cut(s)	327, 412
ApeKI	GCWGC	2 cut(s)	61, 227
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	40, 47, 229, 320
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	48, 214
BccI	CCATC	2 cut(s)	50, 248
BceAI	ACGGC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	62, 228
BlsI	GCNGC	2 cut(s)	63, 229
Bme1390I	CCNGG	2 cut(s)	123, 306
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	151, 193
BmrFI	CCNGG	2 cut(s)	123, 306
BpiI	GAAGAC	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	51, 304, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 257, 310
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	51, 304, 330
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	57, 257, 310
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	48, 214
BseYI	CCCAGC	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	329, 414
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	57, 257, 310
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	329, 414
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	2 cut(s)	329, 414
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	151, 193
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	3 cut(s)	51, 304, 330
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	2 cut(s)	51, 330
Bst2UI	CCWGG	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	289, 408
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMCI	CGRYCG	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	121, 304
BstV1I	GCAGC	2 cut(s)	48, 214
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	329, 414
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	15, 273, 373
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	412
CviAII	CATG	3 cut(s)	52, 91, 185
CviJI	RGCY	9 cut(s)	61, 82, 194, 227, 255, 329, 335, 407, 414
CviKI_1	RGCY	9 cut(s)	61, 82, 194, 227, 255, 329, 335, 407, 414
DdeI	CTNAG	2 cut(s)	289, 408
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	51, 330
Eco24I	GRGCYC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	51, 330
EcoT22I	ATGCAT	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	51, 330
FaeI	CATG	3 cut(s)	55, 94, 188
FaiI	YATR	7 cut(s)	53, 92, 182, 186, 286, 404, 420
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	3 cut(s)	51, 90, 184
Fnu4HI	GCNGC	2 cut(s)	62, 228
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	62, 228
GluI	GCNGC	2 cut(s)	62, 228
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	329, 414
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	55, 94, 188
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	40, 47, 229, 320
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	22, 91
HpyAV	CCTTC	3 cut(s)	26, 151, 343
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	184, 230
HpyF3I	CTNAG	2 cut(s)	289, 408
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	55, 94, 188
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	143, 191
LpnPI	CCDG	8 cut(s)	78, 136, 265, 291, 318, 378, 379, 395
Lsp1109I	GCAGC	2 cut(s)	48, 214
MaeII	ACGT	1 cut(s)	279
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	5 cut(s)	25, 37, 394, 397, 400
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	175, 261, 399
MnlI	CCTC	4 cut(s)	164, 245, 304, 319
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	3 cut(s)	117, 276, 377
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 306
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	306
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	55, 94, 188
NlaIV	GGNNCC	2 cut(s)	151, 193
NsiI	ATGCAT	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	90
PctI	GAATGC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	63, 229
Psp1406I	AACGTT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	151, 193
PspPI	GGNCC	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	117, 276, 377
SatI	GCNGC	2 cut(s)	62, 228
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	123, 306
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	37, 155, 229, 257, 282, 409
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	175, 261, 399
StyD4I	CCNGG	2 cut(s)	121, 304
StyI	CCWWGG	2 cut(s)	51, 330
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	175, 261, 399
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	117, 276, 377
Tru9I	TTAA	3 cut(s)	117, 276, 377
TscAI	CASTG	3 cut(s)	15, 273, 373
TseI	GCWGC	2 cut(s)	61, 227
TspDTI	ATGAA	3 cut(s)	17, 107, 273
TspRI	CASTG	3 cut(s)	15, 273, 373
XapI	RAATTY	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.