Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009521

Physical Location & Seq

Genomic Coordinates Reverse (-)

14498463 .. 14498962

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032403

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAACAGAAACCAAGTCCACCAAGGGAGACCATGTGCAAATAGATATGCAGTCGGCAAGGAGGTACTTGGAGAAGGAAGGCAAAACTGCAGCCTCCATGGATACTCTGCCAGAAAAGTTCTTTGAGCCTTTCATCATGAAAGGCATTCAAGTGGATCGCATTGAACGCGGCACAATTGTCTGCTCCTTCAAAGTACCCCCTCGATTGCTGAACGGGGGCGGTTTCCTGCATGGTGGAGCCACGGCAGCCCTTGTGGATGTGGTCGGGACAGCTGCAATCTTTACTATCAATGTTTCGTACTTGGATTCTGCTTATCCTGGGGAGGAAGTGGAGATTGAGGCCAAGGCTTTGAGGGTTGGGAAAGCTGTTGCTGTTATTAGTGTCGAGTTCAGGAAGAAGAAGACGGGGAAGATTATTGCTCAGGGCCGCCATACCAAGTACCTTGCCCTCTCTAGCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

156

Amino Acids

16.86

Weight (kDa)

9.46

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_3	PF13622	72 - 139	6.3e-06	Acyl-CoA thioesterase N-terminal domain
4HBT	PF03061	97 - 138	2.5e-07	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04290 AT1G04290
fragaria_vesca	FvH4_3g11670 FvH4_3g11670
malus_domestica	MD05G1260500.v1.1 MD10G1239800.v1.1
prunus_persica	Prupe.4G104800_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.5G159500_v2.0.a1
rosa_laevigata	RLG00000032391 RLG00000032403
rosa_multiflora	Rmu_sc0000563.1_g000005 Rmu_sc0004438.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059050 Rroxscaffold_1G00073830
rosa_rugosa	Rorug05G0046300
rosa_samantha	Rh5AG137200 Rh5BG136000 Rh5CG148100 Rh5DG137100
rosa_wichuraiana	Rw5G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	171, 222, 430
AclWI	GGATC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	68, 198, 302, 443
AgsI	TTSAA	3 cut(s)	152, 167, 193
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	2 cut(s)	275, 368
AluI	AGCT	2 cut(s)	275, 368
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	342, 427
ApeKI	GCWGC	3 cut(s)	92, 248, 275
AspS9I	GGNCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	104, 260, 262
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	5 cut(s)	93, 172, 249, 276, 430
BlsI	GCNGC	5 cut(s)	94, 173, 250, 277, 431
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	24, 99, 243, 320, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	5 cut(s)	24, 99, 243, 320, 345
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	104, 260, 262
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	344, 429
BslFI	GGGAC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	344, 429
Bso31I	GGTCTC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	171, 222, 430
BspANI	GGCC	2 cut(s)	344, 429
BspCNI	CTCAG	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	24
BssECI	CCNNGG	5 cut(s)	24, 99, 243, 320, 345
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	3 cut(s)	24, 99, 345
Bst2UI	CCWGG	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	2 cut(s)	99, 243
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 248
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	104, 260, 262
BstV2I	GAAGAC	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	344, 429
BtgI	CCRYGG	2 cut(s)	99, 243
BtsCI	GGATG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	4 cut(s)	67, 197, 301, 442
CviAII	CATG	4 cut(s)	35, 100, 139, 233
CviJI	RGCY	9 cut(s)	95, 130, 242, 251, 275, 344, 350, 368, 429
CviKI_1	RGCY	9 cut(s)	95, 130, 242, 251, 275, 344, 350, 368, 429
CviQI	GTAC	4 cut(s)	67, 197, 301, 442
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	24, 99, 345
Eco31I	GGTCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	24, 99, 345
ErhI	CCWWGG	3 cut(s)	24, 99, 345
FaeI	CATG	4 cut(s)	38, 103, 142, 236
FaiI	YATR	6 cut(s)	36, 50, 101, 140, 234, 435
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	4 cut(s)	34, 99, 138, 232
Fnu4HI	GCNGC	5 cut(s)	93, 172, 249, 276, 430
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	93, 172, 249, 276, 430
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	5 cut(s)	93, 172, 249, 276, 430
HaeIII	GGCC	2 cut(s)	344, 429
Hin1II	CATG	4 cut(s)	38, 103, 142, 236
HinfI	GANTC	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	139, 268, 394
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	70, 74, 199
HpyCH4V	TGCA	5 cut(s)	40, 52, 92, 232, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 248
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	38, 103, 142, 236
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	191, 239
LpnPI	CCDG	6 cut(s)	126, 242, 306, 333, 379, 410
Lsp1109I	GCAGC	3 cut(s)	104, 260, 262
MaeI	CTAG	1 cut(s)	456
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	409, 412, 415, 424
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	2 cut(s)	177, 461
MnlI	CCTC	7 cut(s)	57, 106, 213, 319, 334, 348, 461
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	168, 248
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	38, 103, 142, 236
NlaIV	GGNNCC	1 cut(s)	241
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	94, 173, 250, 277, 431
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	4 cut(s)	68, 198, 302, 443
RsaNI	GTAC	4 cut(s)	67, 197, 301, 442
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	5 cut(s)	93, 172, 249, 276, 430
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	4 cut(s)	68, 277, 370, 447
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	177, 461
SsiI	CCGC	3 cut(s)	171, 222, 430
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	3 cut(s)	24, 99, 345
TaqI	TCGA	2 cut(s)	205, 387
TasI	AATT	2 cut(s)	177, 461
TauI	GCSGC	2 cut(s)	174, 432
TfiI	GAWTC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	92, 248, 275
TspDTI	ATGAA	2 cut(s)	124, 155
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.