Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009521

Physical Location & Seq

Genomic Coordinates Reverse (-)

13529896 .. 13531050

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATACTCTGCCAGAAAAGTTCTTTGAGCCTTTCATCATGAAAGGCATTCAAGTGGATCGCATTGAACGCGGCACAATTGTCTGCTCCTTCAAAGTACCCCCTCGATTGCTGAACGGGGGCGGTTTCCTGCATGGTGGAGCCACGGCAACCCTTGTGGATTTGGTCGGGTCAGCTGCAATCGTTACTGTTGGAGCTCCCACTGTTGGAGTGTCGGTGGAGATCAATGTTTCGTACTTGGATTCTGCTTATCCTGGGGAGGAAGTGGAGATTGAGGCCAAGGCTTTGAGGGTTGGGAAAGCTGTTGCTGTTATTAGTGTCGAGTTCAGGAAGAAGAAGACGGGGAAGATTATTGCTCAGGGCCGCCATACCAAGTACCTTGCCCTCTCTAGCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

133

Amino Acids

14.19

Weight (kDa)

9.3

Isoelectric Point (pI)

19.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	41 - 116	6.4e-18	Thioesterase superfamily
FlK	PF22636	48 - 126	7.8e-06	Fluoroacetyl-CoA-specific thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04290 AT1G04290
fragaria_vesca	FvH4_3g11670 FvH4_3g11670
malus_domestica	MD05G1260500.v1.1 MD10G1239800.v1.1
prunus_persica	Prupe.4G104800_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.4G105000_v2.0.a1 Prupe.5G159500_v2.0.a1
rosa_laevigata	RLG00000032391 RLG00000032403
rosa_multiflora	Rmu_sc0000563.1_g000005 Rmu_sc0004438.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059050 Rroxscaffold_1G00073830
rosa_rugosa	Rorug05G0046300
rosa_samantha	Rh5AG137200 Rh5BG136000 Rh5CG148100 Rh5DG137100
rosa_wichuraiana	Rw5G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	72, 123, 364
AclWI	GGATC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	99, 236, 377
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	53, 68, 94
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	176, 197, 302
AluI	AGCT	3 cut(s)	176, 197, 302
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	2 cut(s)	276, 361
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	3 cut(s)	73, 177, 364
BlsI	GCNGC	3 cut(s)	74, 178, 365
Bme1390I	CCNGG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	144, 254, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	144, 254, 279
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	278, 363
BsiHKAI	GWGCWC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	278, 363
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	58, 222
BspACI	CCGC	3 cut(s)	72, 123, 364
BspANI	GGCC	2 cut(s)	278, 363
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	144, 254, 279
BssMI	GATC	2 cut(s)	58, 222
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	190, 205
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	61, 225
BstMBI	GATC	2 cut(s)	58, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	278, 363
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	98, 235, 376
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	2 cut(s)	40, 134
CviJI	RGCY	8 cut(s)	31, 143, 176, 197, 278, 284, 302, 363
CviKI_1	RGCY	8 cut(s)	31, 143, 176, 197, 278, 284, 302, 363
CviQI	GTAC	3 cut(s)	98, 235, 376
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	60, 224
DpnII	GATC	2 cut(s)	58, 222
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	43, 137
FaiI	YATR	3 cut(s)	41, 135, 369
FatI	CATG	2 cut(s)	39, 133
Fnu4HI	GCNGC	3 cut(s)	73, 177, 364
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	73, 177, 364
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	3 cut(s)	73, 177, 364
HaeIII	GGCC	2 cut(s)	278, 363
Hin1II	CATG	2 cut(s)	43, 137
HinfI	GANTC	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	40, 328
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	190, 205
HpyCH4V	TGCA	2 cut(s)	133, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	43, 137
Kzo9I	GATC	2 cut(s)	58, 222
LmnI	GCTCC	4 cut(s)	92, 140, 194, 202
LpnPI	CCDG	6 cut(s)	27, 143, 240, 267, 313, 344
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	60, 224
MboI	GATC	2 cut(s)	58, 222
MboII	GAAGA	4 cut(s)	343, 346, 349, 358
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	78, 395
MmeI	TCCRAC	2 cut(s)	172, 187
MnlI	CCTC	5 cut(s)	114, 253, 268, 282, 395
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	58, 222
NlaIII	CATG	2 cut(s)	43, 137
NlaIV	GGNNCC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	39
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	74, 178, 365
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	99, 236, 377
RsaNI	GTAC	3 cut(s)	98, 235, 376
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	199
SatI	GCNGC	3 cut(s)	73, 177, 364
Sau3AI	GATC	2 cut(s)	58, 222
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	4 cut(s)	178, 199, 304, 381
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	78, 395
SsiI	CCGC	3 cut(s)	72, 123, 364
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	190, 205
TaqI	TCGA	2 cut(s)	106, 321
TasI	AATT	2 cut(s)	78, 395
TauI	GCSGC	2 cut(s)	75, 366
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	25, 56
TspRI	CASTG	1 cut(s)	208
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.