Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

1175033 .. 1175768

Gene Structure 736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATCAAGGAGGTCGTAGCAGTGGTAGTGGAGGAGGAGGAGCCGAGCAAGGGAAGTACCGTGGAGTAAGGAGACGACCTTGGGGTAAATACGCCGCGGAAATAAGAGATTCGAGGAAGCACGGAGAGCGTGTGTGGCTAGGGACATTCGACACTGCGGAAGACGCGGCTCGAGCCTATGACCGAGCCGCCTATTCAATGAGAGGCAAAGCTGCCATTCTCAACTTCCCTCACGAGTATAACATGGGAACCGGATCCTCATCCACTGCGGCTAATTCTTCTTCCTCGTCGCAGCAAGTTTTTGAGTTTGAGTACTTGGACGATAGCGTTTTGGATGAACTTCTTGAATATGGAGAGAACTATAACAAGACTCATAATATCAACATGGGCAAGAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

6.84

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 69	1.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	98, 167
AciI	CCGC	6 cut(s)	96, 98, 158, 167, 189, 269
AclWI	GGATC	3 cut(s)	12, 249, 262
AfaI	GTAC	2 cut(s)	59, 314
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	198, 347
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	12, 249, 262
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	212, 292
AvaI	CYCGRG	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	199, 304
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	6 cut(s)	96, 168, 189, 213, 270, 293
BlsI	GCNGC	6 cut(s)	97, 169, 190, 214, 271, 294
BmcAI	AGTACT	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	43, 250, 256
BpiI	GAAGAC	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	61, 80, 96
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	61, 80, 96
BseGI	GGATG	2 cut(s)	260, 340
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseRI	GAGGAG	3 cut(s)	48, 51, 54
BseXI	GCAGC	2 cut(s)	199, 304
Bsh1236I	CGCG	2 cut(s)	98, 167
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	4, 254
BspACI	CCGC	6 cut(s)	96, 98, 158, 167, 189, 269
BspFNI	CGCG	2 cut(s)	98, 167
BspLI	GGNNCC	3 cut(s)	43, 250, 256
BspPI	GGATC	3 cut(s)	12, 249, 262
BssECI	CCNNGG	3 cut(s)	61, 80, 96
BssMI	GATC	2 cut(s)	4, 254
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	62
BstDSI	CCRYGG	2 cut(s)	61, 96
BstF5I	GGATG	2 cut(s)	260, 340
BstFNI	CGCG	2 cut(s)	98, 167
BstKTI	GATC	2 cut(s)	7, 257
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	2 cut(s)	4, 254
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 136, 164, 173
BstUI	CGCG	2 cut(s)	98, 167
BstV1I	GCAGC	2 cut(s)	199, 304
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BtgI	CCRYGG	2 cut(s)	61, 96
BtsCI	GGATG	2 cut(s)	260, 340
BtsI	GCAGTG	3 cut(s)	28, 153, 264
BtsIMutI	CAGTG	3 cut(s)	28, 153, 264
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	58, 313
CviAII	CATG	2 cut(s)	244, 385
CviJI	RGCY	7 cut(s)	44, 139, 170, 176, 188, 212, 272
CviKI_1	RGCY	7 cut(s)	44, 139, 170, 176, 188, 212, 272
CviQI	GTAC	2 cut(s)	58, 313
DpnI	GATC	2 cut(s)	6, 256
DpnII	GATC	2 cut(s)	4, 254
Eco130I	CCWWGG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	2 cut(s)	247, 388
FaiI	YATR	7 cut(s)	180, 240, 245, 351, 363, 375, 386
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	243, 384
Fnu4HI	GCNGC	6 cut(s)	96, 168, 189, 213, 270, 293
FokI	GGATG	2 cut(s)	247, 347
Fsp4HI	GCNGC	6 cut(s)	96, 168, 189, 213, 270, 293
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	6 cut(s)	96, 168, 189, 213, 270, 293
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	247, 388
HinfI	GANTC	2 cut(s)	110, 370
HpaII	CCGG	1 cut(s)	252
Hpy188III	TCNNGA	2 cut(s)	233, 344
Hpy99I	CGWCG	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 136, 164, 173
Hsp92II	CATG	2 cut(s)	247, 388
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	4, 254
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	1 cut(s)	265
Lsp1109I	GCAGC	2 cut(s)	199, 304
MaeI	CTAG	1 cut(s)	140
MalI	GATC	2 cut(s)	6, 256
MboI	GATC	2 cut(s)	4, 254
MboII	GAAGA	3 cut(s)	173, 270, 273
MflI	RGATCY	1 cut(s)	254
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	364
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	98, 167
MwoI	GCNNNNNNNGC	4 cut(s)	127, 136, 164, 173
NdeII	GATC	2 cut(s)	4, 254
NlaIII	CATG	2 cut(s)	247, 388
NlaIV	GGNNCC	3 cut(s)	43, 250, 256
NmeAIII	GCCGAG	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	6 cut(s)	97, 169, 190, 214, 271, 294
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	43, 250, 256
PspXI	VCTCGAGB	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	254
RsaI	GTAC	2 cut(s)	59, 314
RsaNI	GTAC	2 cut(s)	58, 313
SacII	CCGCGG	1 cut(s)	99
SatI	GCNGC	6 cut(s)	96, 168, 189, 213, 270, 293
Sau3AI	GATC	2 cut(s)	4, 254
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	1 cut(s)	364
SetI	ASST	3 cut(s)	16, 82, 214
Sfr274I	CTCGAG	1 cut(s)	171
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	6 cut(s)	96, 98, 158, 167, 189, 269
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	113, 150, 172
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	4 cut(s)	98, 170, 191, 272
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	3 cut(s)	28, 160, 271
TseI	GCWGC	2 cut(s)	212, 292
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	28, 160, 271
XhoI	CTCGAG	1 cut(s)	171
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.